Blg00600.9 (mRNA) - B. lanceolatum

Overview
NameBlg00600.9
Unique NameBlg00600.9
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000646:36109..41842+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00600.9 ID=Blg00600.9|Name=Blg00600.9|organism=Branchiostoma lanceolatum|type=mRNA|length=5734bp|location=Sequence derived from alignment at Sc0000646:36109..41842+ (Branchiostoma lanceolatum)
GTCACGCCCTGACATAATCTGGGTCAGGTAACAACCACGGTGGATCAGCA ACATTTATATGCCCCGAGGCCGTTCGACAACCTTTTTGTGTCCGCTGAAA GAAACTGCGTTCGTTCACTTCAGTGCGGTTCTTTGTATGTATATCCTTGG CTAGTTGCCCTTTTGTGTCCCCAGCCTAGACATGTGACGCGTCAGAAACC TCGCCGAGCAACTTGTATACCGGCCCGGCCAAGGAAACTATATATACCTC TTGTATGTACCACGCGAGAGGTGTATATGTACCAGACCACTGCAGCAGCA GAACACAGTGGACTATTACCGCGACTCAGCTGTACCGAGGGAGATATGAC ACCTATAGCCTGCTGAATCTGTTAGTCGCCATGCGGACATGGTTCACCAA TCTTCTCCAGTTCGAAATTGTCGTCTTTGTGCTTGCAATGAGTCATTTCG GAGTGTTAGTATTGTATAGCTATGGGCAGAGAGCCTCAGCACCGAGTGAC GACTGTGACTGTGAGGAACGTACAGAATGGCGACGTATGAAACTGAGGTC AGTCAGTGCACAAACATTAAGCTTGTCTTCAAGCAGATCGTCTGGGGCCA GTTAAAAACCGAATTTTGCCCCAGTGTTCTGTTATGAGATCACCACATAC CAGCGTTAAACAATCGATGCTATTTCTGGTGAGATTAGTTCTGTCTTGCT TGTTCCTCATTGTAACTTGCAATTTTTGTTTCCAAGTGGTCGACACCAAT CCCTTAACAGCCCACTGAACCACCCCGGCACACACCCACTGCTCCCAGCC AGGTCAATTCAGCAGACAGACCAAGCAGTACACTAGTACGTGGCAAATCT CACGTTAGCTTAGTCTGTCTGTCTTTGATGTGGCATTATCATTACTGAAG TTCCAATGCGTCGGGTCAGGTAAGTGTTAGTTCTGAAAACACGTAACAGT TCAGAAATACTGTATAGTTCACTAATTCTGCCACGCAGATAATTACAGGT TTATTCTTTGCCCCGGGCGATATTCCCATTGTTCGCCAGCCAAAGCCTCG TGTGCTACCACGTCTGCGGATACAGTTCGGACAATGCTCCTTTTAAAGGC CCTGTCACACTTGTGCGTATATACAAGTCCGCATGAGTTGTGTAATAATA TGTTTTTGGTTTAGGTTAAGTTCGCAGCCGAATTAGTGATTTCTTAGGTT CGATCACTTGGCAGCACAACAGTGGGTGAAAGTAGAAAACAACTTTTTCC CCCGCAAACCTTACTTAAACCAAAAATGTTAATGCGCAACTCACGCGCAC TTGAATATACGCACAAGTGTGACATGGCCCTCACATGCATTCAGTATTAC GATTCGTGGTTATGAAAGTTGTTTTCATCATTGTGCCAGTTAGATTTGCA CTGCACAATCCATTGACAAATACTCGCACGATTTTTGTCCAATTGCCAGA CCAGACCAGTCTTGTATCAAATGCTTGTGTGTTCTATTTATAGCCCGGTG ATCGATGAGAGGCAACAAAGGTTATTGGAAAACAACTCATTACAAACCTT AGAAGCTACAGAGAAATCACCGACCCCTGTTTTAAAGGCTAAAAAAGAAC CTGGATCGGAAAGGTGGAAGGTGTGGATGTGGAACGGGTTTGACTTCACC ACACTTCGGAACATAAGGTGGGATATTTCTTTATTAGACTTCTTCATTTA CAAGATGAAGGGGGGGGGGCAATGCAGGTGATTCCTCACCTCTGCTAGTT GCCTTCCCTGAATATTGATGGCTCGTTTCTTTGTCTCTTACGCCGTTATC AGTTACATGTACATACAAATGTACATACATTGGGATGTGCCGCCTTGTAA TCTTAGATGTAACATACATCATCAGCGTAGTTTTATGTCAGTGGTTTCTT GAACAAAATGTTGTTGAAAATTCAAATCAGCAGGATCAACAACTAATGTG ACACGGTATCCATGTGGATTCATTCCTCAACACCGTTATATGTAAGCATT TCAAGATACAATACTGAGTCGTTGAGATGAAGTATTCATTGATTTCGCAG AGAATCCATCTTGGAGAACACCAATGTCACCACCCACTGGTACTGCTCCA AGGACAACATGCCGCTACATTCAACCTTCAGGTTTTATGATGGAAAACAA CAACACAAAGTCATGAGAGGGACTTACCAGTACCTACCACAGGCAAGTAT ACAATGTGGGGGAAGAGCTAGCAATCCCTCCCTGTAAAAATATAAAAATT ACCTTGCTACATGCTATAGCTACATGCTGACCTAGGTGCCACTTGGCACT CCATTGTGAACAACAACGCGGATATACTGTGCAGAGAGTACCGTGTGTTT GCACATTTAAGTCACTGATCAAAGATATGCTTGACAGATTTTGGAGTTCG TCATATTCCTTCCTCTCTGATTGGATAGATTTGAAGAAAAAACATTAATG ATAAAAGATAAACCTCCATATCTAATTCATCATTTCACGTGTATCTGTCT CAAATTGAAAAATATACGTAATTCTATGTGTCTTCTACTCATTTTCGATA CCCATTGTGTTTATTACCGATTGAAATAATACTAGGTTAAAGGTTTTCCA GCCCACTATTTCTCTTTATGACAGTGGAGCTGTTACATCAACCGCAGAAG TTTTAGGCTAAAGGAACACCGAACAAAAGTTAACCTACTCATGTGTCGTG ATGAAATGTTCTGTACTTTACGAATGAGCCACGAATAACCGCGTGCTATA TGCGGCCCGCGCATTTAGGCGGCGTATACCTTTTATGGTGCCGCGAAATG ATAAAATGTTTTTTCCATGTCCAGGAAACACATTTTCCCGACAAGCTGTT CCGAACCTGCAGTGTTGTTGGCAACGGAGGGATCCTCAACGGCGGAGGCT GTGGCAGCCAGATCGACTCCGCTGACTACGTGTTCAGGTGAGAACTTTCA TCATGCCGGAAACGTACAGAATCGTCATACTATCTGTTGTGGCAGAAGCG GCGACTCTTGTAGAGTGTGTTATCTGCTGGGAGCCCTCCACAAAAGTCGC CACGGCTACACTGTAATGTGCTTTTTTACAAAGCTGCGAGTGTTCTAAAA CGCAGCATGCTAGCACGTACTTTAATATCACATGCATTTCTTCCAACAAC ATGTAATGTTTCTCTCAGCTCTCTCATATACCTTATAAGTTAGACGCCAT GGACAGTTGTTGATCAAATGCCCCCCCCCCTTCATTCTTTAGAATCAACT TGCCTCCTGTCCATGGAGACTACCAGAAAGATGTCGGCAGGAAGGCAAAC TTCGTCACCATCAACCCTTCTCTTCTAACAGAACAGTAAGTGTGAACGAA AAGTATCTTCTGGCATAGAGTTACGTGTGAAGAGTGTGCATGATAAAAGA GTGTGTTCTAAGAGTGAGTGTGAATGGAGATCGTGATCTAGGATTTTACA TATCAACAGATAGGTGAAAATGGACGATCATTTCGGTTAGGGTTAGGGTA AGTATGGACATTGGATATAGATATTGATATCGTAACTTTTTGAAAAAAAG ATATTTCACCTGAAACTCGACAAAAATACAGAGCAACAGGTGTCAAAATA TGCTGGACCTGTTGACCAGAAGCAAACAAATTACCCTGACATCTTTATAC AATCCCCGTGCCCCTTCCTGATACGCCATGTACACTATAACCATGTCGAC CATTTTCTGTTTAAAAGGTATGGTTCGCTCAAATCGGACGTAGGTAGACA GAACTTCACTGTCATGCTTGACTCCTACCTCGGCCCGACTACCTTCTACA CACACCCGTTTTACAACGTCAACAGCAGACAGATGGCCTACGCCGCCCTG CGAGTGGTCAAGAACCAAACAGCAGACGACGGGAAAACGGTTGTCTGGTC ACACCCTGGCTTCCTCCAGGCGGCAAATACGTTCTGGAGAGAAACCGGGC GTGTCAAGGTCAAGAGAATTACCTCAGGTTCGTTCCTGCACTGGTAGAAC AAGTAATATCCCCAGGCCCGGTCCATAGTAATTTAATAGGATTGGTTAAA TCTGAATACTAGATAGACGCGGTCACATACGTCGTGCGATCGTCGTACGA TCAAAAAAACTGCATGGGTTGTATTCTTAGGATAGCCATGCATGTGTCCT GCAAATTTCAGCTGTCTTGTTGCCAAACAGGCTGTTTTAAATCCTTGTAC ACACTTGGTTCTGTCACAGCCTGATTGAAAATTGTGTCACAGTCTTAACA TGACAAATATGACCGCACCATAACATAAACGTCTTGTAGTCACACAAACT TCTTATATAACATTTCTAAACACTCTTTCTACTGGTACTGTGCCCGATGT TTTCCAGGTCTGTTGGTCGTGACCATCGCCCTGGCCATGTGCGAGGAGAC CCACGTGTACGGCTTCTGGCCCTTCAGCACGGACCTGGACGGGAACCCGC TCAACTACCACTACTACGACCGCGCAGTCACCCTCCGCAGTAAGGTCGTG TCCCAGAAGAACCAGTGGAGGGTGGTGGAGATGAACAAATATCACAAGAT GAAGACTGAGCACGACAGACTGGCGAGGCTACACGAGATGGGCGTGGTCC GGATGCACGTGGGGACGTGTGACGTCACAGAACAGGACGATGAACGAAGT TGAAACACGAAGTTGAAAGAACGAAATGAGAGAAGACTGCCAATCTTAAG TGCTGTTAGTAAAAGCGGTTTTAAAGAAGACAACTCCACGTCAGGGTTTT GGGATCGTCTATCCCGATTTTATCTTGAGATTAAAAGAAACAGACATGCA TATAATGTCTTCTGTAGGAAGATGGCTGATGCTTTCTGAAAGTTTCTCAC CACAGCTTAAATTGTACTCGTCGTGAGCAACAGTTTTGTTCTTTTTTTTG TTCTTTATGTTAAAGATATCCTAATATATCCTGTAGATATGGGTAAAACT TTTGCGCCATGTGCAAATTTATTTGCCAGTTGATTTTAGTGACGCTGAAG AAGAGTACTAGACATCACTCCATGCACTCGAAACGTCCGTATCTTATCCA TTTGTACAGATTGAATTGTCTGTAAACATGTGCAATTTGTTGAACTATTT CTGGTTTCTCTATCAAGTGAGGCTCACTCAGTTTCTAGTCAGTACAGTCG GCAGCAAAAGTTAGATTTACCTCATGAATTGGAATTTGAACAACAACTGC ATGAAACAAACCTCGACTTGTAATGGTAAAAAAATAACCCGATTCTGTGT CTGTGTTGCCCTTCCGTGTTTTCCCAGCATTGTTTGTTTGTACTACATTC TAAGATTTCTGATTTAATACAAAATAGACAACGTCTATGATCAATTAGTT TACTAGGTAAGAAGACCCTCATATCTGGTAATATATATGAAATATATCCT CGGCTCAGCATTTGTTGATGACAACACAACAGTGATGGAAGTATTAACGC GTAGCGCCTAGCAATCGACAATTCAAACCTCACTTTTCTTTAGTCTGGAG AGGTTTGTGAATTTTCCTGATGTTTTTCTCTATCTCTCTTCTAATTACCC TCGGCTTAATACAAAAGATTAGCTCCCATGATGTTGGGAAAAGCAACTCC TGTCCAGGAATAGCCTCTGTAACGTTGGGTAACCTAAATTCGGGATTTTT CCGATAATGGTTGACTGAAATCAATCTAGCAGAACAATAAACCATCCTTT TTTTCTATAATTCTGTCAGTATCATGTACTATCT

Coding sequence (CDS) from alignment at Sc0000646:36109..41842+

>Blg00600.9 ID=Blg00600.9|Name=Blg00600.9|organism=Branchiostoma lanceolatum|type=CDS|length=1101bp|location=Sequence derived from alignment at Sc0000646:36109..41842+ (Branchiostoma lanceolatum)
ATGCTTGTGTGTTCTATTTATAGCCCGGTGATCGATGAGAGGCAACAAAG
GTTATTGGAAAACAACTCATTACAAACCTTAGAAGCTACAGAGAAATCAC
CGACCCCTGTTTTAAAGGCTAAAAAAGAACCTGGATCGGAAAGGTGGAAG
GTGTGGATGTGGAACGGGTTTGACTTCACCACACTTCGGAACATAAGAGA
ATCCATCTTGGAGAACACCAATGTCACCACCCACTGGTACTGCTCCAAGG
ACAACATGCCGCTACATTCAACCTTCAGGTTTTATGATGGAAAACAACAA
CACAAAGTCATGAGAGGGACTTACCAGTACCTACCACAGGAAACACATTT
TCCCGACAAGCTGTTCCGAACCTGCAGTGTTGTTGGCAACGGAGGGATCC
TCAACGGCGGAGGCTGTGGCAGCCAGATCGACTCCGCTGACTACGTGTTC
AGAATCAACTTGCCTCCTGTCCATGGAGACTACCAGAAAGATGTCGGCAG
GAAGGCAAACTTCGTCACCATCAACCCTTCTCTTCTAACAGAACAGTATG
GTTCGCTCAAATCGGACGTAGGTAGACAGAACTTCACTGTCATGCTTGAC
TCCTACCTCGGCCCGACTACCTTCTACACACACCCGTTTTACAACGTCAA
CAGCAGACAGATGGCCTACGCCGCCCTGCGAGTGGTCAAGAACCAAACAG
CAGACGACGGGAAAACGGTTGTCTGGTCACACCCTGGCTTCCTCCAGGCG
GCAAATACGTTCTGGAGAGAAACCGGGCGTGTCAAGGTCAAGAGAATTAC
CTCAGGTCTGTTGGTCGTGACCATCGCCCTGGCCATGTGCGAGGAGACCC
ACGTGTACGGCTTCTGGCCCTTCAGCACGGACCTGGACGGGAACCCGCTC
AACTACCACTACTACGACCGCGCAGTCACCCTCCGCAGTAAGGTCGTGTC
CCAGAAGAACCAGTGGAGGGTGGTGGAGATGAACAAATATCACAAGATGA
AGACTGAGCACGACAGACTGGCGAGGCTACACGAGATGGGCGTGGTCCGG
ATGCACGTGGGGACGTGTGACGTCACAGAACAGGACGATGAACGAAGTTG
A
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00600.9Blg00600.9-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00600.9-exon-Sc0000646-1570713199:36109..36655Blg00600.9-exon-Sc0000646-1570713199:36109..36655Branchiostoma lanceolatumexon
Blg00600.9-exon-Sc0000646-1570713199:36845..37775Blg00600.9-exon-Sc0000646-1570713199:36845..37775Branchiostoma lanceolatumexon
Blg00600.9-exon-Sc0000646-1570713199:38159..38300Blg00600.9-exon-Sc0000646-1570713199:38159..38300Branchiostoma lanceolatumexon
Blg00600.9-exon-Sc0000646-1570713199:38933..39045Blg00600.9-exon-Sc0000646-1570713199:38933..39045Branchiostoma lanceolatumexon
Blg00600.9-exon-Sc0000646-1570713199:39351..39443Blg00600.9-exon-Sc0000646-1570713199:39351..39443Branchiostoma lanceolatumexon
Blg00600.9-exon-Sc0000646-1570713199:39826..40085Blg00600.9-exon-Sc0000646-1570713199:39826..40085Branchiostoma lanceolatumexon
Blg00600.9-exon-Sc0000646-1570713199:40466..41842Blg00600.9-exon-Sc0000646-1570713199:40466..41842Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000646genomeSc0000646:36109..41842 +
Properties
Property NameValue
GeneIDBlg00600