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Blg00319.5 (mRNA) - B. lanceolatum

Overview
NameBlg00319.5
Unique NameBlg00319.5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000086:164282..169161-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00319.5 ID=Blg00319.5|Name=Blg00319.5|organism=Branchiostoma lanceolatum|type=mRNA|length=4880bp|location=Sequence derived from alignment at Sc0000086:164282..169161- (Branchiostoma lanceolatum)
TACCCTAATGTCTTTAATGACTTAATTTTTTGTTGGTTACAGTGTGCAAG AGATCTGTGGCTCAAGGATCAGCTTCACATGAGGTAATGATTCCAGTTTC CCTAATTGAAATATCTATCTCAGTGATTCTCACTGTACCTCATGACATTT TGTATGGTCAATATGATGGGAGAATTACCAAAATGTTAATTCAAACCTTT CTATCCTTCTACCTTAACAACTTATTAAAGTAAAATTTGCAGAACTTTAA GGAAAAATGTGCAGAATTAGTCAATGTGTGAAAAAACAAAGCAGTAATTT CTAACATTTAGTTCCATATATATACATGTAGGCATAAATGCTGGAAAACT TAGTGCTTACAGTGTACATGTAATTCTAAGGCTACTTTATTAAAGCCATA AACTGGTTGGTGACAAAAGCAGGCTAAAGGATAGGATGGCTCTAGGTAAA TTTACCTTTATATATATATGATTATTGATTTAAAAGATTTCCAAGTTAAA GAATGTAGTAACAAATAGGCTACAAGTTCTGCAGCTATGGTATTGAAAAA ATTCAATATTGTGACTAAATGTAAGCTGACTCTATGTATACATGTAGATG TGTTCACATAGAAGTATCCCTTAACTTGCAGATGGCCATCATTTTCAATG CTGAAGGGTTGAAGGACCTTCTCAGTCCACCATGTGTGGCTCAGAACTTT GTCAACCACAATGCAGTCCTTCACAAGGTAAGTTTTCTCCAAGTTTTATA ATAGATAAGTGCACAAATTTCATACATACACTGAAGGGAGCCCTTAGATG CCTGAGCCACTGAAAAATTAACCCATTCGGTTGAGACACTATTTATTTTT ATACAATTATAATTATTTTATCATTTTTTATAAAGTGTGATATCACATGG ACAAATAGATAAATGTGATTGGTAGAATGTTCATGTACAATGATAGAGGT CGCACACTCAGGCATTTGTTTACTGTGCATGATTAAGATGTTTGTTCCCA TACACAGGTGTTTGTGGTGGGCGAGTCTTATTTTGTTGTGGAGAGGCCAT CTCTCAAGAACTTCTCAGCAGGCGGTGAGTTCCTATATGTACCCTGAGAC ATTTGGGACTACTTGTACAGACATGTTGACATTGTGATACATCTATTATA GATTGTTGTGTATTTGCATTGTCTTATAAAAATGTGACTGTTGTAAACTG TGAAGGTGTGTATGGTGATGTAGCATATCAATGTGTATAAATGTACTCTA GATGCCTTGTTATTGTAAACGAAACAACAAAGATTATAAATAGCTTGCAG GTAATGTTATACATACCACGCACAGTATACCTTTTTTTATTGTTATAGTA TTGTTTTTTGTCATGTTCTGACTGTTTAAAATTGTGTTTTAGATCAAAGC ACAATCTACTTCAACAGCCATGATGTTTCCAAGGCTGGGTCTTCTTCATT CCTCAATCAGGTATAGAGTACATTTGTACATGCTTCCTCAAGACTCAAGT TGAAGTTTTTTTCCATGCATTGTTAGGCCCCCTGCAACAGAGACTAATAT AGAATGGCATGAAAGATTTGCCATAGTATCTTACAATGTATTACAAATAA CTTACATAGTACAAATTGTCGGACATGCTATTCATTGGAAACTACTTAAT CCTGTAATAGTCGTGATTCTTGATGTTATAGGATGATGTACAATGGAGAT GAATTACCATCTACGATATATATTTTGCGGAGAAAAAATTCACAATGGTA CTGCCAACATGTGTCTATGTGATACTGTGTCAACACCTGTTCATTCATAA TCCACAGTTGGACAGTAGGGACAAAGTGTCATGCCCGTCCCTCCCTCTCT GCCGAGAAAAGTTCGAGCACGTGTTGACCAAGTTACGGCAGCAGCTGGGC ATCACGCTGTTCGGCGTGGACATTATCGTGGAGAACAGGACCAGTCGGCA CGCTATCATCGACATCAACGCATTCCCAAGTCAGTCCACCTTTACTTTTT GTCCTCAGTATCATTAGTAATTGATCCCTGGTCATTAAGACTGAGTGATA CTTTATGATATGATATTCAATATTCAACTACCATTGAACTAGTGTTTGGT CCTAGATACCAAAGAACGATTTAAGTGTCTATGTGTTGTCTATTCTTTGT TGTTACTATTGCAATTTTTGTCCAATTACATATTGCTCTATGCAGATAAG TAGTTCTACAGTATTCTATGTGTTTAAAACTTAGAAAAGGTACATATACC GAAATTGATGTAAGATGTTGACTAAACAAAGTGTTTGTTTTTCCTGTAGG TTATGACGGGGTACCAGACCCTTTCTCTGTAGTGGCGGACCACCTGCAAT CGCTTTTGTCTCAGCACTGTGGCGTGTCAAGGGCCACGGTCAATGCCAAC ACATGCCACTGCCAACCGAACAGAGCAGAAGTGTCTGTACCAGATTCAGT AGGACCAAACAAAGACAGTACGACAGTAAGGACAGAGAGTGCCAACAGCA GTCTTATCATGCTGACCAATGGGACGGACTATAACAATGGGTCAGGTTTT GACTCTTCAAAAATTACCAATGGGGAAACATTGGCTCCTCCGAGGATTGA TGGAGTAGGGTTGACTGAAATTGTAAGTAGGAAGGATGTACCCTATACCA AATTTGGCAAGGGACAGGAGGTGTACTTAGGAGGACTGGCCAATGGGAAT GGCCCTGCATGCGTGACAACAAGTGCCGATGAGGCCCAGTGTTGTAAACA GTTGACCAATGGGGAGAAACTGGGGTTTGTACGATTAGCCAAAGTTTAGG ATGTAAAAGATGCATAGCAGATTGTGCGAGACTGAAATCTATTTGTTTTG TGATCACAGCCACTTAATTGCATGTGGAAGAATGTCCTACTTTTGATTAC AGACCTTTGAAGCTCTATTTACTTTTATCCAAACATGTTACAATCTCATC ATTTCCTTGCTGACCAATCAGAAAGCAGCACTAAGCCCATCAGAAATCAG TAGTGATTAGCCAATCAAGTGTCCTATTACAATTGTACCTGGCCAATCAG GTGGCAGAACATACATGTATACATCTCAGTTGACCAATGACAATGAGCAT GACAATATCAATTTTAAGCATTGAAGTTACAAACCAAATAGTAAGCATAA AGATGATGCTTATTTTTTGGTTATATTAAACATAGTCTAAATGTAGTAAT GTTTGAACCATCTATTCACTTTGTCATAAATTATTATAAATGTCATAGGA TAATGTAACTGATGATTTTTTTGGTAAGATAATTGTATGAAATAGGGTAA AGTGACCAACTGATAGCTAATGAACAGTACCCACTGCCCCAAGTTATTTG GAAATTAACTTTTCAAAGATACTGTAAGCTAGCCAACTACAACTTGGCAT CTAATATACATATAGGCTGTCCTTGGTTTTAATTCCAAATGTGCCCCATG GAAAGTTGTACATGTTGTTGGCCTGGGACAGTGACATCAGAATACTATAT TGTTTGTAAACTTGTGATATTTCGCATAATAGTACTAGTGTTTGTAAACA AGCAATAGCTTAGCTGAAAGTAATTTTGAAGCTAGCTGGCTAGTAGTTAC TGTAGATATATCCATGTTGTAATTCAGTTTCAAATTGTTAGTCTTTGTAC ACAAGTAACAATTACATTGGACAAACAAAGACCAGTTTTGGTTATCTTCA ATTTTCTTTTTTTTTCATGCATCACAAGGTTTTTTTGTACCAGTATAAGA TTTATAATGTTTGAAAATGGGTTATATTAGCTTTGATATATGTTTATTTG TTGTTACATAAATGTACAACAGAAACCATAGCAAAATCCTGGAATCGTCT GAAAAGTATCGGAATTTCACTTTTTAGGTAAAATATTTGTATCACAGACT ACAAATAATGTTTCATGATGAAATATTGCATATGATAGTCTACAGGCACA TCCCTGTTGACCACCATTGCCTGGTGTATGTATGTTCTCAACTTGCTCAA CAATCTCAATGTTTTAAACATAAAGAAACAAATATTTTGGACTATAGTCA GTGTATTTGTAGAAGAAGATTGTGAACTAACGTTGTTAACAAAGTACCAA TTTGTGCCAACTTGCTGCTAAACAGGCTTTCAGCTGGCAAGTCCAGAAAA GACAACCACAAAAATGCTCACTTTCGTTATTATTTGGCATAACTGATCAA AACGTGAAGATGCTTGATTTGCCAGTTCAGTAATTGTCATCAATCCAGCA GCAATGTTATTGATGTTCTGTAATACTTCAGAAAATGGAACAAAGAGTAT TGAAATATTAACATGTGTAGCCTATGAATTGTGAAGTACATGTTTGTGTT TTCTTGTTAGGTTATAGGTTAGACATTTTTCATTTGATAGAAGAATATCA ATATTGAATTTGGAATGGTGGAGGGACACAGGCTTTNGACACAGGCTTTC TGGGCCCCCCCCCCCCCATATTATTGAACGGTATTGCCATGTGTCTTGAA TGGGTTGTTTACATGTACTTCTTTTGACCCCCCCCAAAAGAGAAATTTCT CAAGAAAATATTTTATCAAAACTTCTACATTTTTCTTATCTATGGAATGA AAGCTGATGTTAAATGAAATGGATATGATTGAAAATTAATTTGAAAATAC CAAATGTTACTTGAACATTCCTATCTCATGAGGGTAGGTCCAAAAAGTAT TGTACAGTTATGTCATTTTACTAATGGGTTTGTGTAATGTTAACAGGTAA GACATTTAACGTTATATTGTGTTGTGCTTGTGTGTTGAAGTACCTGTATG ACAGATTAGTACAAAATGAAAAATCAAAATTGTTATACTAATTTCACATC AAATAAGAAATACAACATCAATAACATCAA

Coding sequence (CDS) from alignment at Sc0000086:164282..169161-

>Blg00319.5 ID=Blg00319.5|Name=Blg00319.5|organism=Branchiostoma lanceolatum|type=CDS|length=903bp|location=Sequence derived from alignment at Sc0000086:164282..169161- (Branchiostoma lanceolatum)
ATGGCCATCATTTTCAATGCTGAAGGGTTGAAGGACCTTCTCAGTCCACC
ATGTGTGGCTCAGAACTTTGTCAACCACAATGCAGTCCTTCACAAGGTGT
TTGTGGTGGGCGAGTCTTATTTTGTTGTGGAGAGGCCATCTCTCAAGAAC
TTCTCAGCAGGCGATCAAAGCACAATCTACTTCAACAGCCATGATGTTTC
CAAGGCTGGGTCTTCTTCATTCCTCAATCAGTTGGACAGTAGGGACAAAG
TGTCATGCCCGTCCCTCCCTCTCTGCCGAGAAAAGTTCGAGCACGTGTTG
ACCAAGTTACGGCAGCAGCTGGGCATCACGCTGTTCGGCGTGGACATTAT
CGTGGAGAACAGGACCAGTCGGCACGCTATCATCGACATCAACGCATTCC
CAAGTTATGACGGGGTACCAGACCCTTTCTCTGTAGTGGCGGACCACCTG
CAATCGCTTTTGTCTCAGCACTGTGGCGTGTCAAGGGCCACGGTCAATGC
CAACACATGCCACTGCCAACCGAACAGAGCAGAAGTGTCTGTACCAGATT
CAGTAGGACCAAACAAAGACAGTACGACAGTAAGGACAGAGAGTGCCAAC
AGCAGTCTTATCATGCTGACCAATGGGACGGACTATAACAATGGGTCAGG
TTTTGACTCTTCAAAAATTACCAATGGGGAAACATTGGCTCCTCCGAGGA
TTGATGGAGTAGGGTTGACTGAAATTGTAAGTAGGAAGGATGTACCCTAT
ACCAAATTTGGCAAGGGACAGGAGGTGTACTTAGGAGGACTGGCCAATGG
GAATGGCCCTGCATGCGTGACAACAAGTGCCGATGAGGCCCAGTGTTGTA
AACAGTTGACCAATGGGGAGAAACTGGGGTTTGTACGATTAGCCAAAGTT
TAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00319.5Blg00319.5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00319.5-exon-Sc0000086-1570713199:169079..169161Blg00319.5-exon-Sc0000086-1570713199:169079..169161Branchiostoma lanceolatumexon
Blg00319.5-exon-Sc0000086-1570713199:168435..168530Blg00319.5-exon-Sc0000086-1570713199:168435..168530Branchiostoma lanceolatumexon
Blg00319.5-exon-Sc0000086-1570713199:168088..168154Blg00319.5-exon-Sc0000086-1570713199:168088..168154Branchiostoma lanceolatumexon
Blg00319.5-exon-Sc0000086-1570713199:167702..167769Blg00319.5-exon-Sc0000086-1570713199:167702..167769Branchiostoma lanceolatumexon
Blg00319.5-exon-Sc0000086-1570713199:167183..167354Blg00319.5-exon-Sc0000086-1570713199:167183..167354Branchiostoma lanceolatumexon
Blg00319.5-exon-Sc0000086-1570713199:164282..166862Blg00319.5-exon-Sc0000086-1570713199:164282..166862Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000086genomeSc0000086:164282..169161 -
Properties
Property NameValue
GeneIDBlg00319