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Blg00165.0 (mRNA) - B. lanceolatum

Overview
NameBlg00165.0
Unique NameBlg00165.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:2436972..2440909+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00165.0 ID=Blg00165.0|Name=Blg00165.0|organism=Branchiostoma lanceolatum|type=mRNA|length=3938bp|location=Sequence derived from alignment at Sc0000026:2436972..2440909+ (Branchiostoma lanceolatum)
ATGTCCCAAAATGGCTCTTGGGCAGATCACATCTACGTGCAGGCCACAGC TGACTTCCTGAAGCGAACCATTCACATTGTTTCGACAAGTGGAGGTGAAG ATGGCTGCTTCATCTGTGTGGAGCCAATAGGTGGGGAAAGTGAAGGGACC CCCCTTTTGTTGGGACACTACGCTGAGCGTCATTACCAAAGCCTGGACAC AACAGGTATTGTGCTTTAGATTTTTGTCTTTTACTCAATGTAAACTTTAA AAGAAACACAGTGCTGTGATATGTCATACACTGTAGACGTTCANAGGTAT TGGGCTTTAGATTTTTGTCTTTTACACAATGTAAACTTTAAAAGAAACAC AGTGCTGTGATATGTCATACACTGTAGACGTTCATTGTCTTCCCACAATA GTCTTCCTTGCTTTCTATGAACAATATATATTTTTTATACATTTTGATCA TGTCATACATCCACGCTACATTTCAGCTGCTTTAGGCTCCAGTCCTTCAC CACTCCAAGGCTCCAGTCCACCGCCACTCCAAGGCTCCAGTCCTCCACCA CTCCAAGGCTCCAGTCCTTCACCACTCCAAGGCTCCAGTCCTCCACCACT CCAAGGCTCCAGTCCTCCACCACTCCAAGGCTCCAGTCCTTCACCACTCC ATGATTATGAGGTGCGAATTAATTTGATTTTTATTGGATACTCATGACCT CAAAGAAAAGTCAAACTACATTTTATTATGTGATATGTACTTGTCAGCAT AGTAGTTGTGACAACTGTCCATAATTCCCATAGTTGGTCTCTGTTAAGAG CAATATGCAGCCAGCTGATGGCACCCCCTCCGAAATACTGCAGAATCATT GGTACAAGTGTAAGAATAAGATGTATATGTAACCAATGCATTCCATTATG AGCAGTACACAACAGTGCGAATCACACACATATGGTGGTAAACATGGCCA GCCCTAAAGCTTTATTGTCTTATGCAATGACATGTACAGTAGTAGTGAGT CATTTTTCTGTATTTACCAGGTATCTATTGCGATGAGATATCACAGCTTG CTGGGACCTGAGTCTATTGGGGATACACCACCTGTGGTAAGTAGTTAAAA TGGCCTCCCACACTGATATACAAACAGTGCCAGATGCAAAAAGAAATGCT CAGTATAGGTATTAGTCTAAAGCTGCATGTAACTTTGGACCAAATTGATT GCAGAAGTAAGGAGAGAAACATTCTTTTTAATTTGTTCCTTCTTTTGTTT TTGACACAAAATTTACAGAGGCGCAGACAGTCAGAGAATGGTGATATGCA GGTATTCTTCATTAAGTCATCTTTTTCATACCCGAAATGCTCTACATGCT ATCGCTATCGATAAATTGCATACTTAATTGCACTTTCTTTTCTCTCTTTG CTAATAGGGTTTTATCTGCATATAACTTGAAGCCATATGATTGCAATTAC TTANAGCTACATGTAACTTTGGACCAAATTGATTGCAGAAGTAAGGAGAG AAACATTCTTTTTAATTTGTTCCTTCTTTTGTTTTTGACACAAAATTTAC AGAGGCGCAGACAGTCAGAGAATGGTGATATGCAGGTATTCTTCATTAAG TCATCTTTTTCATACCCGAAATGCTCTACATGCTATCGCTATCGATAAAT TGCATACTTAATTGCACTTTCTTTTCTCTCTTTGCTAATAGGGTTTTATC TGCATATAACTTGAAGCCATATGATTGCAATTACTTAAATTACTGCTCTC TCTTACCTGAAGTTTTCTTCTCAGCTTACAGATGCACCCAGTGACCTTGT AGAGGTGCAAGATCCTAGAGATAGCCTTCAGTCTTGGCTTCAAGCTCGTG ATAATTTTTCTGCTGATCTGTTGTAAGNTTCTTAGCTTACAGATGCACCC AGTGACCTTGTAGAGGTGCAAGATCCTAGAGATAGCCTTCAGTTTTGGCT TCAAGCTCGTGATAATTTTTCTGCTGATCTGTTGTAAGGAAACTAAGGCT GGCCTTTTCTATAATAACACGATACTAACATTTTTTGTTTTGTTCATCTT TTGGCATCTTAACTTGCTGACATCTACAGCTGTCTCTTTTTTTATTGTTT TATTGTTTACACACTACTAACTGGAAGAACATATAGCACTATGAAACCGC AAACTGCAAAACAAGACTTTATCTGTGATGCTATATGTATGTAATAATGA TGTCACACATTTATCTGTTATTACCATGCTACGTATTTGCAATGTATGAA AGAAATACACTTGCTATATATAGACTTTATCAAGAAAAAGGCACACTTCG AGGGGATTCATGTAATCTTACTTTAACATTGACAACATTTTGATCCCATG CCCTCTTTTTTTTATTTTTGTGTTAAGGTTTGGGCCATGCGAGGAGGCTG AGCTGAAGGGATATTTTACTTCAATCAAGCCATTTCTGCAAAGACTCGCA GACGGAGAGGTAAGTTTAGATGAAGGTATTGTTTGGTACATCAAACTGTA AGGTAAACAATTTCAATGTTATTGACAGGGCTTCCTATAGTATAATCCAA GGACAGATATTTAGTGTGGAAAAATAATTGTTGATGTCCGTTTTGTGTTT TAGATTCCAGACAACAAGCGGCACTCCACATTCTTTGGGCAAGATGAGGA AGGCAACTCCACCAGAAGTGAGTCTTTTTTCTCAATCTGTATCTGTATCT ATATAGCCGGTATAACCGCCATATGAGGCGTAACACACCTGAGCTTTGCA GGCACGCGATGTGGCAGCAGCTGGTTATATAACACTGAACGGTCTGTTAC ACATAGTCAATATACTACTAGTAGTAATAATGGTGTGTGCACATTTAGTT GTTTAGTGCAACCCTTGCATGTTTTTACATTGATGCATATTGGAAACTTC ATGACACATGTACAGTTAAAATAACACCAGTATAATGACTCATGCTAGTC TTTCCTGGTGCACAAAGGATCACAAGTGAACAAAAGTTGAAATGGCTGAT GTGGTCAGAACTCAATGACTTTGTAATTNGGATCACAAGTGAACAAAATT TGAAATGGCTGATGTGGTCAGAACTCAATGACTTTGTAATTTGTACATAC AAAACAGCCTAATTATCACCATTGTTCTTCCCTTTAGGGAAACTGTATAT GATGCATAAATCTGGAGCATTTACTGAGGAACAGGCCACTTTCATCGGGA AGTGTATTATGAAAGAGGTGAAGATTCCTCTGGAGATGCCACTGGTAAGC CCTCTTCTTACTTGTTAGCAGTCATCATGACAAACTTTGATATTGGGGTT GGTGTCCAAATGGGCTGTATCCACTGTATTTTCTCTGCGGCAGCATTATC TTCTTTTGTGACGCTGGGCANCAGTCATCATGACAAACTTTGATATTGGG ATTGGTGTCCAAATGGGCTGTATCCACTGTATTTTCTCTGCGGCAGCATT ATCTTCTTTTGTGACGCTGGGCAACAACATACAACGCCTTTCGATTCATG GACTTTAGTGAACTCTACCTGCAGTTGCTTGCTTATGTGTTGGCAGTTCC TTGTAAGGAAGACTGCATTGGAAAATGACTAATCTTTATTCATTGCGAAA AAATATTGAATACATATGTAGTAATATTCCAATATGTTATAAGCCAACTG CAATGTTTTAATACATTATATTGATGGTTGTAATTTCTCTCATCCAAGAA AGACTTGTTGTTGACATGTAACTGTCAGAAGCAATGGAGTTTTGATTGGT GCAATTGAGAGGCACATTTCAACATTTTAGTACTTAAATTCTTCTTTTGG CTACAGCTGATGGAGTATCAGATTATGGTCCTCCTACCAGAAGCCCTTGC TGCTATCTACCAGGTGAGGAAAGGCACGACCACGCTGGAGGAGGCCAGGA ACTGTGTGTGGAGAGCTGGGTTTCGAGAAGACCTTTAG

Coding sequence (CDS) from alignment at Sc0000026:2436972..2440909+

>Blg00165.0 ID=Blg00165.0|Name=Blg00165.0|organism=Branchiostoma lanceolatum|type=CDS|length=684bp|location=Sequence derived from alignment at Sc0000026:2436972..2440909+ (Branchiostoma lanceolatum)
ATGTCCCAAAATGGCTCTTGGGCAGATCACATCTACGTGCAGGCCACAGC
TGACTTCCTGAAGCGAACCATTCACATTGTTTCGACAAGTGGAGGTGAAG
ATGGCTGCTTCATCTGTGTGGAGCCAATAGTCCTTCACCACTCCAAGGCT
CCAGTCCACCGCCACTCCAAGGCTCCAGTCCTCCACCACTCCAAGGCTCC
AGTCCTTCACCACTCCAAGGCTCCAGTCCTCCACCACTCCAAGGCTCCAG
TCCTCCACCACTCCAAGGCTCCAGTCCTTCACCACTCCATGATTATGAGG
TTTGGGCCATGCGAGGAGGCTGAGCTGAAGGGATATTTTACTTCAATCAA
GCCATTTCTGCAAAGACTCGCAGACGGAGAGATTCCAGACAACAAGCGGC
ACTCCACATTCTTTGGGCAAGATGAGGAAGGCAACTCCACCAGAAGGAAA
CTGTATATGATGCATAAATCTGGAGCATTTACTGAGGAACAGGCCACTTT
CATCGGGAAGTGTATTATGAAAGAGGTGAAGATTCCTCTGGAGATGCCAC
TGCTGATGGAGTATCAGATTATGGTCCTCCTACCAGAAGCCCTTGCTGCT
ATCTACCAGGTGAGGAAAGGCACGACCACGCTGGAGGAGGCCAGGAACTG
TGTGTGGAGAGCTGGGTTTCGAGAAGACCTTTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00165.0Blg00165.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00165.0-exon-Sc0000026-1570713199:2436972..2437101Blg00165.0-exon-Sc0000026-1570713199:2436972..2437101Branchiostoma lanceolatumexon
Blg00165.0-exon-Sc0000026-1570713199:2437464..2437632Blg00165.0-exon-Sc0000026-1570713199:2437464..2437632Branchiostoma lanceolatumexon
Blg00165.0-exon-Sc0000026-1570713199:2439349..2439430Blg00165.0-exon-Sc0000026-1570713199:2439349..2439430Branchiostoma lanceolatumexon
Blg00165.0-exon-Sc0000026-1570713199:2439575..2439638Blg00165.0-exon-Sc0000026-1570713199:2439575..2439638Branchiostoma lanceolatumexon
Blg00165.0-exon-Sc0000026-1570713199:2440109..2440215Blg00165.0-exon-Sc0000026-1570713199:2440109..2440215Branchiostoma lanceolatumexon
Blg00165.0-exon-Sc0000026-1570713199:2440778..2440909Blg00165.0-exon-Sc0000026-1570713199:2440778..2440909Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:2436972..2440909 +
Properties
Property NameValue
GeneIDBlg00165