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Blg00163.0 (mRNA) - B. lanceolatum

Overview
NameBlg00163.0
Unique NameBlg00163.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:2262344..2267892+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00163.0 ID=Blg00163.0|Name=Blg00163.0|organism=Branchiostoma lanceolatum|type=mRNA|length=5549bp|location=Sequence derived from alignment at Sc0000026:2262344..2267892+ (Branchiostoma lanceolatum)
TGTACACCTTGCTGATGTCCGGGCAAGCCGAGTAGGTCTCCGCAATGATT CTCTGCAGGTCTTCATACCGGTGATGGGTGAACTCGTAAGGTAACTTGAC TCCAAGTGTGGTGTGTATGGTCAGCAGAACAAGGGAAAGCCTGAGCCATA GGTCTGCCATGTTGGGGCGTTGTAGCCTTCGTTCGAAGGATGCCTCTACA GATGAGATATGCCGACCATCGTGTCAGGATGCTAAATATAATTCAAGAAG AAAGTGGTGAATCTATTGGCCAATTCTGCCACATCCTGTATGCAACTTAC ACACATCTACGAGCCGGTCTTGCCGAGGGGGGGGGGGGCATACCGNNNNN NNNNNNNNNNNNGGGGGGGGGGGGGGGGGGCATACCGTGAAGTAAGTAGC ATATACCTCAGATTTCGAAACATAAATTCAAACTACGTTGATTAAGGTTA GACATACAGGTAATAAGATACGCCAAAAATAGTTACTCAGGCAACTGGAT AAAACTCTGAACATAACTAAAAACTATTCTTTAAATGTTCACTGATCATT GACGTCGTTTTCTTGCAAGCAAATAGCATTTTAAAAAAAGGGCGTCGCAA TGACAACAATGATTTCAAATTTGGTGATCATGGATACAAGGCATTTAATA GGTACCTTGATGTAGGCTGATTTTGCTTTGTTGGTAAACACAGGAAATAT AAGATACTGACACAAAATGTGCTAAAATGTTTACAAAAATGATAATAACG TGGCCATATGGAGGCTTCATTAAGCCTAAATATTTTTGGCTTTTGCCACC AAAAACACTTTACGTTGAGCACATTTCAATCGCAACGCTGATAATGACTA GTATTTTTAGCACATATACATACATGTAGGAGTCTGAGCTTGAATATTAA CAAAGGTCTTACCCATGGCCAAACACAGTTGTCTGCTCGCTACTATGACG AAGTAAATTTGAGGTCGCGTCAGACTACTTTGAGAGAAACTGACTGCAGC TAAACCACGAAAGAAAAATGGCGGACAGGAAGTTGATAAACCGGATCATC CAGTCGAAATCGGTGAGTTCCAATTACTCATGGATAGTTCTAATTAGTCC TTACATAAGTCACCATGGAGATTTTTCATTACTGAGCCATAAAAAATGTG CTTAAGTCCCTCTATCTCCAAGCAGATGTAGAATCCAGTAAAATGTTTTA CACTCATAGTAGAGTCAGTACTACTCTCACAGTCTTTTTGGATGCCGTAG GGGCATTTGGTGGTATTGTTATCGACTGTGTTTATTTAGGTCATGATGGG AAGACCTAGAGAGCCGATCCCTCTCTTTCATTGCCCTCTACCTACCTTCA ATCCCGACAGCCTTTTTTATACTTAGGCGGAGTGAATTGAAGTCGATTAA AAGTGCGTTTTTCAAAGATACGAGTTCTAAAAAAATCGAACTCGTGACCT CTCAATCTGGTCACAGCCAGTTTAGCCACACTGGGCCAGTCGACGCCAAA AAAGTAGTAGAAGGGGGATAACTAGTAGAAGGCGAATAGCTCAAACAATG CGGACTACAAGAAAACCGCCGGCCGCTAAAACACCTCTAGAACGCACTAC ATCTGCTTAGAGAATACTAGGGTCCCTGCCCTATAGGGCCCTTTATTCAG GGTCAGTAGGATAGGTTTATGATGATCCACTGACTTTGTCCCACATTTAT ATTCAATTTTTAAACGGGACGCTCGCATACTTTTCAGGTTTCCAACAATC ATTCAAGTTCCAGTAACGTGAAAAGTTGTACCTTGTGTGTCTATCAGAAT GTCTTGTACACAAATTAACTGATTTCCTGGTTCGTATTTATGCCCATGGC TTTATTGCAAAAAGTAGTTCCTTCACAACACCAGCATGGATTTCTTACTA TATATTAAACAGATGAAGACACACATTATAGACCATCATCAACAACATCA TCATAACACTGTAAATGGAAAAATCAGTTGATTACACAAATATATGTTTT TAAAAAAACTACACCGATAGGAACACTAAGCGCTACATACACCCAGCGCT ACATACAAAATTACTAATAAGACAATGTGACACATGGAGCCCAAAAGAAA TGATAACTTGCAAACAATCATGCTCATCACCCTCTGAAAAAGTCACACAA TTAAAACTAAATTAATAGTAATCTTCCAGAGTTGAATAAAAGATGACATT CATACATTTTATAGCAATTCCTTTATAAACAATTCTAATAACAATTGCAG AACAGCAATACTACGGTATATTTGTTGGTGCGTTTGTCAACCAAACAACA AAATGCCATATGTCTTGTTAAACCTCTAGATCTATCACCAAAATATTCTT CAATCTATTGTTTTGGTTTTTACAAACCTTAATGTTTATTTTCCTTTTGA AACGTTAGATCAATTAAGAATATATATAAATTTGTATTGAGACCTAGATG AACATCATCAAATGAATTCTATCACCAGACTTTAAGAAACATTATAATAG ACAAAATTATGAGAACCTACCCAATTCCTAGAACATGATTGTTCGATATT ATAGCTACAGTATAAGAAGCATATACGTTGTTTTTCCTACATACAGTGGA ATAAAATTCTCTATTTTCATATTCAGATTTTCTTGTGTGAATTGACTTGG AATGTTATAGAAACTTCCTCTACTAGAGAAAATGCAGTTGTTAACATTTG ACTGGTCGAGTCCAAATAAAATGATCATTAGTGTCCATCTCAATTAAAAT TCAACCATGATAGCGTAACGGCTCGACTAATGACAGCGTGGTTGCATTTC CGTCAAATGGTTGCATTTTTATGCACTCTCTCATTGGTGCAACTTGGCAT GCTATCATTGGTTGAACTGTAAGTTGTCATGGACAGTAAGGATCGGTCTA TCTTGGTAACATGCAAATTACAATGATCAAATTTTCCTTGTAATATTATA CTTTTCTTGTGACAATACATTCTCTTCATATTTTTTCTAAGATATAGCGT GCACTAGCTTTAAAACCACGTTGATTCTTGCCCATTTATTTTTCATTAGA TGTGATGGAAAGATGAGGAAATACGACTTGCTAGCATTGCTTGACGATTC TTGCATGTCACGTGGTTGCCTGTAAAACTCCTTTCTGTGAACAGAAATAA TGCACGATTTAAAATTGATGCTAACATATAAATTAAAGCTGCATTTAACC TTTGTTGTAATTTTACTTCCATAAAGATATAGCAGAACAATTGATATGTG AATGTTGATATTTAGTAGAGTTTACTGACAATTCCTCATTCGTCACAGCT TACGCAGAGAATGGTTCGATACAAAGTATGACAGTTTTGTTGTTGAAGAA AAATAGATTTTATTGATCTACGGTAACATATCTCTGTTGCAATGTTATTT TCTTCTACTTGTTACTGCTGACGTAAAGAAAAGCTACAGTTGCTGCACTT ACAGTAAAAGTAGTAATACTGAACGTCGAGATACTTGAATTATTGTTCGA TATTCAGTGTTACAGTTTTGCCAATGAAAAGTAAATGTTATTGATCTTCG ATTACATATCTCTGCTGCAACGATGGTGTTTTTTTTCGTCTACGTATCAC TGCTGGCATTAAAAAAAAACTACCGTTACTGTACTTACAGTAAACGCAGT AATACTGAACGTTGAGATACTTGAAGGTTCCGTAACAGGGGTCCCCGAAC ACGCTGTTGGAAGCGCGGACTGAGCATGTGCGTCTCCCGTGGCATCGGGC GCTCACTGCGCTCCAGCTGGACGAACTACGGCAGCGGGTGGTCCTCACTG GCCCCCCGCAGACGTGGCGACCCTGGTACCGGCCGTAAGTAGTAGCTGCC ACGTAGATCCTGCGACTCCAGGGGCATACCAGCTGGGCTGTTTGGTGTTC ACATGCGAGCACATTTCGGGGGTTGGTATAACGATCTGCAACGACAAACA GTGCGTAAACTCAACTACAAAAGAAATGAATAATAAACCGGTACTTTTGC AATAAGATGAGTGTCACTTGCTTTTAAAAAGAAATGTTATGATTTTTTGG CGTCGTATGGCGTAATGGTAAGAACATCAGGCTTTCAAACAAGGGGACCC GTGTTCGATCCCCGACGTTGTGCCCTTGGGAAAGGCATTTAACACAAATT TCCTCAATTCACTCAGGTGAAAATGAGTACCTAGCCTAGGTTAGGGACGT CCGTCGGATAGGACATTAAATGGAGGTACCGTGTTTGGGGAGAGACACAC CCCACGCACGTTAAAGATTCCACCACAACTTTAGAAAAAGAGTAGGGGCG TGCCCCATTGTGCGATGGTTCAAACCTTTAAGGTTACAGTCTGATTTGAC CCGATCCATGTCAGGAATTGCCGATTTCTCGGCAGATGGACATACGTGGT CAGGTAGAAGAAGAAAAAAATTATTGCCATGAGTTTTTTTCTCACCACTT TCCATATGAAGCAGGCATGTGCTGGCCACCATGGTGGTGTCAGTATTTGC TTTTCCATGGATCGTAGCTCAATGGTACACAACACTTTTGTGTTTTGTCG GCAAAATGTCAAGTCTCCTTCTGGTGTCATAACGTTATATTTTATTATGC TTATAAGATACTAACTTACCTTTCTGTAACATTGATAAATATTGTGAATA AGGTTTGAATAAAAAAATAGAAATAAGAAATAAAAAAGTCTCCTTCTAGT AATCTTGTCTTTGTGCTGTAGATATTCAATAGTGATTGTTTTAAAGAGAG TCAGAAGACCTTTGAATATTCGAATACGTTTGAGCTACGATTCACTGAAA TTCAAAAAATGGACACCAACATGGCGTCGGACAAGCGACGTCACGTAAAA GCGCTTAATACGATTGTTCTGAGCATACAAAGAAGCGCCTTTGTCATATC ATCCTTTGGCCAGCCCAATCTTTAGCCTCTACCAGGCTCCAGGCTTTAGC CTCTACCAGGATCCTAGCTGGAAAAAAACTAGAAATCAGTCGAATAGAGG AGTTGACCAGCCAATATGTACAGTTTGCCACGTCGGCGCCTATCAAGTAG TTATTAGTGGACTTCAACGAAGATGGTGACTCCCGACATCCAAACGTGGC AAACTGTATCTATAGCCTGGCCAACTCTTCTTCTGGCCAACTCTTCTTCT GGCCAACTCCTATTCTACTCTATGAAGCCAGACGTCTGAAGCCTGGTAGA GGCTACCAAAGCTATAAGCGCTAAGCATTCCTTCTTAAAGACTAATCATT CACTTACTGACACACGAGTGCTTGACTTCCAGATACTTGAATGTTCCGTA GCAAGGATCTCCGAAGACGCCGTTCGAGGCCCGAACGTAGCAGCTCTGTC GTCCCTGGCAGTAGCTCCTGACCCTGTACAGACTGGTCCCACTTCTACAG TCAATGGTCCTTACTGGCCCTCCACAGATGCCGTGTTGGGTGCGGCCGTA CAGGGCGTACTCGATGTTTATCTGACGACCGTAAGGACATCGAAGGTACA ACCCGCCATGTTCGCAAACCCGAGAGGTTATAGCTGCAGGGACACATAA

Coding sequence (CDS) from alignment at Sc0000026:2262344..2267892+

>Blg00163.0 ID=Blg00163.0|Name=Blg00163.0|organism=Branchiostoma lanceolatum|type=CDS|length=312bp|location=Sequence derived from alignment at Sc0000026:2262344..2267892+ (Branchiostoma lanceolatum)
ATGGCGGACAGGAAGTTGATAAACCGGATCATCCAGTCGAAATCGATACT
TGAATGTTCCGTAGCAAGGATCTCCGAAGACGCCGTTCGAGGCCCGAACG
TAGCAGCTCTGTCGTCCCTGGCAGTAGCTCCTGACCCTGTACAGACTGGT
CCCACTTCTACAGTCAATGGTCCTTACTGGCCCTCCACAGATGCCGTGTT
GGGTGCGGCCGTACAGGGCGTACTCGATGTTTATCTGACGACCGTAAGGA
CATCGAAGGTACAACCCGCCATGTTCGCAAACCCGAGAGGTTATAGCTGC
AGGGACACATAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00163.0-exon-Sc0000026-1570713199:2262344..2262433Blg00163.0-exon-Sc0000026-1570713199:2262344..2262433Branchiostoma lanceolatumexon
Blg00163.0-exon-Sc0000026-1570713199:2263272..2263405Blg00163.0-exon-Sc0000026-1570713199:2263272..2263405Branchiostoma lanceolatumexon
Blg00163.0-exon-Sc0000026-1570713199:2267626..2267892Blg00163.0-exon-Sc0000026-1570713199:2267626..2267892Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00163.0Blg00163.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:2262344..2267892 +
Properties
Property NameValue
GeneIDBlg00163