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Blg00162.0 (mRNA) - B. lanceolatum

Overview
NameBlg00162.0
Unique NameBlg00162.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:391586..398643+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00162.0 ID=Blg00162.0|Name=Blg00162.0|organism=Branchiostoma lanceolatum|type=mRNA|length=7058bp|location=Sequence derived from alignment at Sc0000026:391586..398643+ (Branchiostoma lanceolatum)
AGATCATCTCATGCTTTTAACAAACGAACGTTAAGTCTAAATACAGGTTT TCGTTTTAGAAATGAGCCGACACAATATTTGTTTTGGACGATTTCTTTCA TTTCTAACTGAAAGAACTCAGGGTCATTCCTCCCTGCGTTCGATTTTTCC TGTTTACGCCGGTTGCCATGGACACGGGTTCCACACAGATGACAAGGTTC TGAGTCCGTGAACTAGGTGAGGAATTTTGTTCTTTCTTGTTTAGACGAGA AAAATAGATTGAAAGAACCTGGAAAAAGTTACAAATCTTCTTTTAATTCT ACGTTTAGATGTTGTGTACACGCCACGAAAGCTTTCAGAGGTCCAAAAAA GCGCTAATTTTGTAGCTAAACTAAGCAGAAACAAGTTCATGTGGCGCTCT GTGACTAAGGCTGACTAAGGTTCAAGGTCACCAAAGTTTGTAAGGACAAT TTCGCACTCAACAGAAAAGACAGCAGTTTTATTTGTTCTTAGGAATATAT CTATAAACCGACAAATGTATTGTTGTTGCGGAGTAAACCAGAGACACTGT GAGATACATTGAAACGTTGTAGGTCTGACGTTCTGAGAAGTCGAGAATTC TGAAGTCTGCACGACTGTGTCGACGTGACGAAAAAATGACTATGGAGTCG ATAAAGGTAAGTTGTCATTTCCTTGTTTTTTCTTCTTCAAAACATTAACC AAAAATGTCACTTTACGGAACAGTTGGACACCAATTGTGTACTTTGACCT CCCCTGCGCCGTATCATTTCCTTTATTTCACTTAATCTCTCTACGACTCT TCAGAGATTTCAGTTAAGGTGAAGAAATTCGCCAACTTTCATTTCCCCTC ATAGTTCGCCATTATTCATTCTATAATCAACATGTTTACCTTTTGACTTT GCTTTTCTTTGTCTGCTCTGTTCTGTTGTGTTGTGTTTGTGTTTTTGTTC TCATTCCAGCATGTTTCCTTTCTTACTCTCAGCAGAGTCAGGGAGAAGCA GCCTTCTCTAGCCAGTAAGAAACTGTTTAGTCAGTTTGATGATGTCATTA TGATCATGATGATGATGATGTCAGAAGTAAGAGGAAGGAGCGGGAATGAA TGATCATGATCCTATCTTGACAGCTACAACTTATAGTTTATATCTATCAA GATAGGATCATGATGATTTAAGTATCATCTTGCTTAAGGCCATACCAATG TACTTTCTTGGTTCTTGCCTTTTTTTGTATCAATAGAACAGGCAGGCAAA AAAAAGAAAGGCATCCCTTAACTTTCTGGTTAAGGTGGCAGAACACAGTA TTTCGCCTATGGGGATTTCTATAGTTAAGGACCACAAACTGACTGAGGTC GACGCCGAAAAAAATATAGTACGGTGCATTTCTGAAGCACGACAAACGGA TATGTTTAAATTGAGGGTACATTCTACAATATAACTGAAAACAAAAAAAA GTTGTGTTTTTTTTACGTTCTGGCGCCCTCTTTTGAATGGGGTCATGCGA GGTCATACGAACTGCAGCCGACTCACCCAGGCTGGCTGCTGCAAAGGTCA CGCGCATGTATACACCGAATCGGCAAGCTTCACAATCTTACTCATACGAT CGAAATGTCGACTTATTATGCTATCATTCAGTAAAGTTCATGCCTCGCTG GCTTTCACGTTCAAGTGTATACATGCGGTCCACGATTTAGTGCGCACTAT TTTCTTACCCCGCGTCATAGACCCCGGGGGTCGCGGACAAATACTGTGTA CTGCCACCTTAAGAAAACTTGAACTTGACTTTTTTTTCATTCAATCAATA AAACAAGTCAGGCTGGAGNCATTTCAAACAATGTGTTTTGAACTTTTCAT GCATTGCTGTATAACAAAAAACAATATAACGTTATAGCAACTAGATTATT GTGGTGTTGATTCATATTTTGAATGGTGCATGCAAGAAACAAAGAATCTG TACATGTGTGGCCTTATTCAATGAGAATTGTTGTATCTTGTCCATCGCAG GAAGTTTTTCAACTGTTTTGTGAAAGAAATTGCGAATGTAATATCAGTCT CTGCACCTTGATATTATCAGTGATGAGACATGAAATAACTCATGTAGTCA TTTAGTAAGAAAATTTCTTATCAAAACTGCAAATTACTATTCATCTGCAA CTGTGTTATCTCTACTTTGTGCTGAGTCAGAGACTATGCATGTTACACAT ATTTCAGGACAGTTTGCAGTGACATTACATCACTTTAACTGTCTTTATCT GCTATTCCTTTGCAGTCTGAGGAGAGATACAGCTTCAGTCCATTGGCAGG AGACCCTGAATGCTCTTCAGAGGTAAGTACATGTAATATAGCGGTAACCA TTATCATCCAATTTATTTAAAGCATCATTTATCTAACAAATGCACAGAGC CAAATGTGTTCAAACCCTTTGCAAGAAATGTCAGCTCTTCTAAAGATGGA TGGTGTGTGACTTTTCTAAGCTTGTTTAACACTGTGTGTATTTGTGTGCA TGTTTGTTTGTGCCTGTGTGTGTATGAGTTAAGTTTGTGTGTGTGTGTGT GTGTGTATGTGCGTATATGGATGAATGTGCATGTCTGTCTGTGTGTGTGG TGTATATGTGTGTGTGTGTGTTTATATGTGTGTGTGCACATGTGTGTGTA TATGTTCATGCAGTTGTGTGTGCGTATGTATGTAAATGTGTATGTGTGTT TATGCGTAAGTTTGCATGTTTGACAATGTTGTGTGTGTATATATGTGTGT GTACGTACGTTTGTGTGTCAGTCTGTGTTTGTGTGTGCGTGTGTGGTTGT ATGTAACATGACATTGTGTATTTGTGCGTGCATGTCAATGTGTTTGTATC TGTGTGTGTAAATGCCGGTATGTGTGTGTGCATGTGTGTATGTGTGTATG CATATATTTGTGTCTGTATGCATGTTTATTTGTGTGTGCGTGTAGATGTG TTATCGTCTCTGTGTCTGTATGTACTGCGTGTATGTGTGTGCAGGTGTGT GCACATTGTGTTTTTGTGTGTGCACGCACGAGCATGTATGTGTGTGTATG CGTGTGTATATGTGTTGTGTGTGCGTTTGTATGTGTGTGTGTATGTGTGT ACGTGTATGTATGTATATGTGTATACGTGTGTATTTGTGTGTGTGCGTAT GTGTGTGTCTGTGTGTGTATATAGGTGGGTGTATGTGTGTAGTTGTATGT GTCTGTGTGTTTTTAAGTGTGTAATGTCTTTGAAGATTTAATGCAAAGTT CGTTATACTTACTACTTTTCAGGGAATGCAACACATTTCTGGAGCTGACT CAACAGTAAGTTTGTTTCCACACTTTGTTATTCCACAAACATCTAAAACA ACAAATGTTTCCCCGTCTTTTTGAAATCACGCTGTCCAAGTGCCTCAAGA AAGTCCTACACAGTGTTACAGACCTGAGCTTTGCAAACTTGAGATGGCGC TTGGCTATAATATAGGGTTAATGAACCGCCCTGAGGTCTATATGGTGTGA TAAGGCATGGTCGTTCCTATCACACCATGCCTTATCACATCGTATAGACT GAAGGAAAGCGGGTCATTAACGTTATTATCATATAGCAATTGTCCATGTC ATGCTAGTAGTTAGTAGTAACGTTACTGTGTGCAGTATTAAATTTTGTGT CATACCTGGGCCGCCCAAACGTTCGCTACGGGTGTTCCGCATCACACGGG GTTCTATAGAATGTTTAGAATGAATTTCGAGTGTTGCGGTGTAGTATTTG TCTTAACATGAAATATAAAAACAAAAACCCCTGTCATTTAATGGTAATGT TCGAACACCGGGTCCATAAAAAGTTTATAGAAGATTAATGACCTGCTTTT TGGGTCTGTTTGAAGAATGCAGGCCCGCAAATGGAGCCTTCTGATTGTTC GACGACATCTACCTATATGATAATGCATAATATAGAGCACTACTGTTTAT TATTATGACAAAATCATATTTGTAAGGACAGTGACAGAATTGATGCACTT CACGTTTTCTCCCTGAAACAGGCAAGCCAAAGTTTCCGAAGATGACCTGG CCAGGTCTTCATTCAAGATTGCTGAGCTGGAGATTCTCCTCGCTGATTAT AAGCTGTAAGTTTGTTTTTTCTTTCTGTCTTTATCATATTTTTGACAATT TGATTTCTATTTGGGTCTGGTTTCTGCTACACTCACAATAACCTTTGCAC AAACCCAAATATAATAAAAACACTTGAACCTCCTGTGTTGGTGAGAAAGT ATATGTATGCAGTGGAGCCCTTATAGTAATTTAATTTACATTTTCTAAAC TTGTGACTGGAATAATATCATCAATCATCTGATACAATAAGCGATTTTTT TCAGCTCATTTGATGACTGGACTAGTATAATCAATTATCAATTTTAATGC ACAATTGTTCTTTGATTATCATAGGCAAGCAGATGATGCCAAGGTCAGAC ATGAAAGGTAATAACATAAATTTGAAACTTAGTTTGTGTTCCATCTTTGT AGTTCATGTTCAAATCTAAAGTTGTTTTGCAAGTTGAAATTACAGTACAC CATTGTCGATATCTATTATGCATTGACCTAGTACATGATTGTGTTATAAG CTTGCGTCAGTTCAGTTCTGAGCTGAACTTTCCATATTAGAATGGGAATT GTAAAGCCGAAAATATCATGTGACTTACCATACAAATTCTTCATGAAATG ATGCTAGAAAAATGTTTAGTCTGAATACTTTTACCTAGCCTGATATCAAA ACATTTTATTTTTTCAAGCATTTATTTAATTCTTCTGTAACAAGTAAAAT ATGTCTTTCAACACACATTTAGTTTCCATGATATTATGAACTTTTGTATT CATCTCAAGAAATGCTTGTATCAAATCTGAATATAATTTGTTTACAAACA CAGGGAGCTCTACCAGTCTCGTGCAGACCTAGTAACGTGAGTACAGTAAT AACAGACATGAGAAATTAAGGTTTAGTTTTTGGCATGTCTGTGTGTCTGT GTGTGTGTGTGTGTTGACTATCTGGATTTTTTAGTCAGCATAATTCCAGA ACCTCTGGATGGATTATGATGATATTTGGTCTGTGGGTAGGTCTTGTGAA GACGAAGGTCAAGGTTCATTTTTGGGCCCTTGGAATGTGACTTTGTTGTT TTAGATCAAAGAAGTTGTTCATTTTTCTAATTGTAATTCAGGACAATTAA GTATAGAATGGTAGAAAAGAAAACACACTTTGCCTGAGGTCTATTATCTC CTGAGAAGTAAATGCGATGAGAGTTTCTAAACAGGTGACTATTTTTGTAG AGCATCATTAACTGAATGATATGGATTTAATATTTTACTAAATTCATCTT AGATAAAGTTAAAGTTGAAAAATCCTTACATGTAAGGAGACAAATGTAAA GACAAGAAGATTGATAAACCTTAGTCTTTGTACATGTACAATTCATATAA TGTGCACTTTGTCATCTCTATTTATCAGGGCCATGTGTGAACTACATGAG GAAAAGAAAAGGTTTGTAGATTTTTATTGCTTTTCAGTGTAATTTCTTCA GTCTGAACAAGCACTGTAAATCTTTATATATTTGCGATGGTTTTATTTTT GAGGTTTTCATGAGGACCTTTCTGTTGCAAAATCAGGACACCACATTTTC AGTGTATTTTTTAATTCCACAGCATTGTTTCCGACACCAACTTAAAACAC CACAAAAACCTCCTTTCCCCTCCTTCCAGAAAATCAAATTACTGCAAAAC ATGATAAATTTACAGTAGCTGTGAAACAAGCAAAATGGGGACACACTGAC TAGTCCTTCAAAGAGGTTCCATGTTTTATATTTTTTTCTTGAAAATTCAA TTCTAGCCTGTTTATGATGTAACGTCACAATCTGAAGAGACGAATTGATC CTTAAGAATACGACATTGTCCTTACAATGAAACTCTGGTTTACGGATCCA CAGAATTTGATCCAGATGGTCAAGCAGTGGTGTGGCGTTACTTCTCGCGC CACATGGACGATTGTACTGCATGTGTGGCGTTGTTTTTAATTTCGGGTTG ATATTTCTTTCCTCTAGAAAATGTCTTGATGTTTACCTTCCAATCTTATT ATCTCCTACAGGTGTGCCCAGAAGAACATGAAGATCACTGATCTGAAGGA ACAGGTGGCTGCTCTGAAGGCAGGAGGAGACTGGTGAGTAATAGCTTCAG TATCTTTTTGGCAACACCTCAGGGGTGGAGGCACCTTTCATTCCCACAGT CCAGAACATTAAGAAAATATTTTTGATCCTCAACCACCTATGATGAAGGC CATCAATTTGCATTAACAACTTGCATTAACAACTTGGTGTTAGGCTAAAA AAATATAGTGGAAAGGTAACCTTTGATGTTTGACTTATTTCCAGTTTCGA CAGTCAAGAAGCTGTGGAGGCACAAGAGCTTAGCGAGTTTCGTATTGCTG AGCTCGAGATCCTGTTGGAGGAACAGAGGGAGTGAGTCAACTTTGTGTTT TTTTTCACCAATATGAGTAAAACAATATGATACAATTACTGGTAAATCAT CTCAGCGAATCCATTCACAGAATATTTCACTGTAGTTCCAAGTAAAGCTA TGATTGTATTGTTTTCCAATTTGTTACTTTTCAGAAATTGACAAGAAACG TGAATTCAATATCAATTGTTACAATGAAGTATGCGCAAGAATTACCACTT AATTCAAATAAGAAACGTGAATATTTGAGACTAAATACACATGGTTTTAT TGCAATTTCTGCTGCCCTGCAGTGACAACACCATGCTGAGAGCCAAGCTG TTGTCAGAGGAGGATAAGAGGCTGACAGCTGAGATGCTGCTGAGTTCCTC CTCTACACAGGAACAAGAGATGGGAAAACGTGGAGGACTTGGTCAATCTG TACTAAGAAAAGCAGGGAAAATGTTGTCACTGATTGATAAGTTGAGGAGA TCCTCTGTTCCCCGTAAACACGAGAAGGTGTTGCTCAAGATCGGCAAGAA GTTCCTTGGACTAGTGGTCGCAGGAGGATCCAAAATGTGCCTGCAGAAAA ATAAATAG

Coding sequence (CDS) from alignment at Sc0000026:391586..398643+

>Blg00162.0 ID=Blg00162.0|Name=Blg00162.0|organism=Branchiostoma lanceolatum|type=CDS|length=753bp|location=Sequence derived from alignment at Sc0000026:391586..398643+ (Branchiostoma lanceolatum)
ATGACTATGGAGTCGATAAAGTCTGAGGAGAGATACAGCTTCAGTCCATT
GGCAGGAGACCCTGAATGCTCTTCAGAGTTGTGTGTGCGTATGGAATGCA
ACACATTTCTGGAGCTGACTCAACAGCAAGCCAAAGTTTCCGAAGATGAC
CTGGCCAGGTCTTCATTCAAGATTGCTGAGCTGGAGATTCTCCTCGCTGA
TTATAAGCTGCAAGCAGATGATGCCAAGGTCAGACATGAAAGGGAGCTCT
ACCAGTCTCGTGCAGACCTAGTAACGGCCATGTGTGAACTACATGAGGAA
AAGAAAAGGTGTGCCCAGAAGAACATGAAGATCACTGATCTGAAGGAACA
GGTGGCTGCTCTGAAGGCAGGAGGAGACTGTTTCGACAGTCAAGAAGCTG
TGGAGGCACAAGAGCTTAGCGAGTTTCGTATTGCTGAGCTCGAGATCCTG
TTGGAGGAACAGAGGGATGACAACACCATGCTGAGAGCCAAGCTGTTGTC
AGAGGAGGATAAGAGGCTGACAGCTGAGATGCTGCTGAGTTCCTCCTCTA
CACAGGAACAAGAGATGGGAAAACGTGGAGGACTTGGTCAATCTGTACTA
AGAAAAGCAGGGAAAATGTTGTCACTGATTGATAAGTTGAGGAGATCCTC
TGTTCCCCGTAAACACGAGAAGGTGTTGCTCAAGATCGGCAAGAAGTTCC
TTGGACTAGTGGTCGCAGGAGGATCCAAAATGTGCCTGCAGAAAAATAAA
TAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00162.0-exon-Sc0000026-1570713199:391586..391801Blg00162.0-exon-Sc0000026-1570713199:391586..391801Branchiostoma lanceolatumexon
Blg00162.0-exon-Sc0000026-1570713199:392158..392241Blg00162.0-exon-Sc0000026-1570713199:392158..392241Branchiostoma lanceolatumexon
Blg00162.0-exon-Sc0000026-1570713199:393851..393907Blg00162.0-exon-Sc0000026-1570713199:393851..393907Branchiostoma lanceolatumexon
Blg00162.0-exon-Sc0000026-1570713199:394249..394262Blg00162.0-exon-Sc0000026-1570713199:394249..394262Branchiostoma lanceolatumexon
Blg00162.0-exon-Sc0000026-1570713199:394858..394890Blg00162.0-exon-Sc0000026-1570713199:394858..394890Branchiostoma lanceolatumexon
Blg00162.0-exon-Sc0000026-1570713199:395607..395690Blg00162.0-exon-Sc0000026-1570713199:395607..395690Branchiostoma lanceolatumexon
Blg00162.0-exon-Sc0000026-1570713199:396010..396042Blg00162.0-exon-Sc0000026-1570713199:396010..396042Branchiostoma lanceolatumexon
Blg00162.0-exon-Sc0000026-1570713199:396489..396521Blg00162.0-exon-Sc0000026-1570713199:396489..396521Branchiostoma lanceolatumexon
Blg00162.0-exon-Sc0000026-1570713199:397064..397096Blg00162.0-exon-Sc0000026-1570713199:397064..397096Branchiostoma lanceolatumexon
Blg00162.0-exon-Sc0000026-1570713199:397697..397768Blg00162.0-exon-Sc0000026-1570713199:397697..397768Branchiostoma lanceolatumexon
Blg00162.0-exon-Sc0000026-1570713199:397980..398066Blg00162.0-exon-Sc0000026-1570713199:397980..398066Branchiostoma lanceolatumexon
Blg00162.0-exon-Sc0000026-1570713199:398358..398643Blg00162.0-exon-Sc0000026-1570713199:398358..398643Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00162.0Blg00162.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:391586..398643 +
Properties
Property NameValue
GeneIDBlg00162