Blg00004.0 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00004.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at xfSc0000336:218..6101+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00004.0 ID=Blg00004.0|Name=Blg00004.0|organism=Branchiostoma lanceolatum|type=mRNA|length=5884bp|location=Sequence derived from alignment at xfSc0000336:218..6101+ (Branchiostoma lanceolatum)
GCAACAGTCAGGGACCGTCCGGACCAACTGCCTGGACTGTCTGGACAGAA CCAACTCTGTACAAGCCTTCCTAGGCCTGGAGGTAAGGAAGTACCCAGCC ACTCACCACTGTTACCTTATTTGTCATGTTGTTCCCTGTGGTCTCTCACC AGTGTACATTTTGATGAAGTCTCCACCAGAGTGCATTTTTCTATGATTAT GGTCTCTCATCAAAGTGTGTACAATTTTTTCCATGTGGTCTTTTTTTCTC ACACACTTATGGTTCCTCACCTTTGTGTTTTCCCCTGTTGTTTCTTGTCA GTGTGTTTACCTACATGTGGAATCTTAGGTTAATTTTTAGAATCAGAAAT AGCCTTGATAATTGAACATGTTCCTGCCAGAAATCTAAGATACAGTGATA CAGAGTGAAAATACGCTCTTTCAAATAAAAGGTGTGTTTTTACAGACCTT ACCTAAGCAGCTGGAGTGCCTGGGACTGAACAGTAAGCCCCAGTTAGTGT CGCGGGTCATCGAGCTGTACAAGAACATGTGGCAGCAAAACGGCGACCAC GTCAGTAAGATTTATGCTGGTACTGGAGCGTTAGGCCAGTCCAAGGTGAC GGGTTTCTCCTTTCTGCTCTAGTGGTGAAAACAGCAACTGCAAGCTCCTA CTTCCTCTTAAGGCCCCCATTCCACTAGACAGCAATCGCGCTGCACTCTC GCTGCGTACTTAAACAGATTTGTTTAATACTTGATTGGAATATCATGCAA AATGTAAGAGTATGTCTGTAAAGACAACAAAACACACAAAGTGTAAAACG ATTCATTTTTTATCTAAGAAATTCGTTGAGCACTCTGTTAAAGTTAAGGT CGCAGAGAGCGCGCAGAGAGAGTGCCGTTCTACTTCTAGTGGAATGGGGG TATCAGCCATACCTATCTGGCCCCTGTTGGTCAATATTGACTATGGTAAA ACTCTAATTCACATCAACCTTGTATACAGCGTAGTCTATGGCTAAACAGT CCTATATTATTAGAATTTACTGTCTCTGCTAGGTAAATCACATCTTTGAA CTGACTCTTAGCCATACATAATTGATACAATGGATAAGACGTGCCTGTGA AATGGTTTGGCTGCAATAAAGAAGAACTGTTATCGTAGCACTTTGGTGCA AAAAATGTTGGAAGTTTGTGAGGCATTTCAGTAGTACTTGTCAGAGGGCT GTATTGTTACTTGCTCTTTGTACTCAATTAAAGTACATGTGTAGAAATGG TGTTTTTTATTCTGTTGAAGATCTAACATCTGTGTTTGGTCCATCAAGAT TTAGCATCATTGCCTTTTCCGAAAGAATGTTTTGTTCAAACTGAACTTAA TACAAAGATGGCTCCGTTGTTGTTCCACCCACCAGGTTGGTAAGCTGGCA GACGGCGCTCGCTCAGTATCGCGTACCATTCAGAACAATTTCTTTGACGG CACCAAACAGGAAGCGATCGACATCCTCCTGCTGGGGAACACGTTAAACA GCGAACTGGCCGACCGCGCTCGAGTTCTCCTGGCAACCAACAACCTCCAC TGTGAGTCCTGCAGATGTTGAATTTCACTCTTTTGTCTTGAAGGATTTGT GCGCCCCTTTTCCCAGTTTGCATCTGCTTCTTTTATATTCTTATATTGCA CCCTGCATTGGTCACCTGGTTTTTGGAAATTTAGAAAATTCAGTTAATAT TCCTAAACCTTATGACAAAAATGAAGTAAAGACAGGATATGTCTATGAAC TTCTTAGTTTTGGTTAGATGCCTGTTGGATTTCAGATTCTGTTAAGTCAC TGACAAAAGACTGCGGATGCTGTTTGAACTGTCTGAACACATCCAGTATC TTGAGTAACTTGTATTTTGTGTTGAATGATCTTGATTAGTTAAGACAGCA TAATGTAGAGCACAGCATTCACTTTCAGTTGGCTGTCCAATTAAGATAAC ACTTCATCTGTTTTTCAAAATCACTCCCAGACCAGCACCTTTCCAAATTT GAAGTGAACGAAATTCATCAATTATGAGGCTATCCGGTGCTTTTAATGTC CGTGCAATTTTGTTTTCTTTCTTTATGATTTCTGTCTTATTTTGTATTTT TTGCTTCCTGACTGGATTTTCTGCTAACCTTACAGAGGTGTCATTCCCAT GATGCCTCTGTGTTTTCCCAACCATTACTTTGTTTTGCCCATATAAGGGA GAAGAGCTCAAGGTCAAACTTTTTCCCGCTTGGAGGTGTTGGTTCAAGGT AGCCTCTTGCACTGCATGCTGGGATTTCTGTTACGAGGTCAAACAAAATT GATTTTACGGATGACATCCTCTAAATTCCTCAAATCTGATGCAAGAGTGA AAGGAGTTAGTTTTCATTCTTTTGTGACGATTTCATGATTTTCATTCACA CTTTTATACCTACAACTTCCATCTTCGTGAATGTCAGTCTTAGAATCAAG CTTGTGTGGCCTCACTGATGCATGCTGGGCCTGGATTTTACCCATGATGC AGTTCTCAGTCTTCTTAGTTGCTCTTTATTTGGGGCAACGTTACAGTTTA CTGATTTATCCAATTTTTCTTTCACCAAGGCATGGTTTGCAGTTAGGATC TTAGGAAGTTGACTTAATTGTTTTTGAAATTATGCACGGTTTTGCAGGTT CACACATTTGACGGAAACCTTTTTTTTCTTCCAGCCTCCCCTAGCGTCCT GATGTCAATGGTGGAGCGTCACGAGGACTACACGGTACCGGAGTCCGTGC GCGTCTGCGTGGGCACCTGGAACGTGAACGGCGGTAAACACTTCCGTAGC ATCGCGTACAAACACCAGTCCATGACAGACTGGCTCCTGGACAACCCCAA ACTCAAGCCAGAGTGCAGCTTTGCAGGTATGTCATAGACTTGGATGAGGT AACCGGGTACCCCATTGAATAAGAGTTTTAAATGAAGTATAGTAATGAGT TATTTCTCTTGCTCACAAAATGAAAAAGGTCAACAGCAAGAACAACAGCA TACTGTAAATGCAGAAATGTTCGCAGTGGTTTTATGTTCACGGTTTTCGC GGCGACCGTTTCACCACAAACTTAAAACCAGTGCAAAAATTTTTGTCCAA TACTATATATAATAGCAGTATGTGACTATAGCGCTGCCGCAAACTTAAAA ACACCACTCCATTTTATATAATACTGGTTTATTGCATAATACAAGTCAAG AAATGGCAGCCGCGGCTTTCCCCTTAGCGTAAGATAAAAACCATGCGAAC TTAAATGCATTTACAGTATGCAGTGACAACCAATCTGTGTTTTATATTCC TTTGAACATTGTATATCGGAAAAAAGCTTAACTCTGTCATGGTAGTGAGC ATATTTCTCCCTTGTTTCCATGTACCCATAGTGACTAACCGTGAGATTAT TCTGTACGTGCTTGAGAAAGCCCTTCAGACAACCTTCAGACACCATCCCA AACGCTTGTTTATTTATTTGTTTTTATACAGACAGTAGCGGGCGGCTGGA CTGGAGCGTGGCAGACGAACATCCCGTGGACATCTACGCCATCGGCTTCG AGGAGATGGTAGAGCTGAATGCTGGGAACATCGTCATGACTGCCAGGTAC AAACAATCGGTTGTTTCCAGGCACATAACAATGATAATACACAAGGCAAA AGCTACTTAGAGCAACTAGATAGATTTTGTAAGCGGCCTTTTGATAGCAT AAACTGTTTTTCGTCAGTGACTTAGCAAGATCTGAACAAAGATAACAGTG TCCATCATATTGTTGGTGGGTTAGAAGAGATCCATGCAGATCTTTATATA AGAAATGCAGTACACAATGTACTTCAAATAGTTGATTTCCCTTCTCTTAA CATGCATGTTTCTTGCTTTTGCATTTTCAGTGAGTACTGGGCTATGAGTG ATTTCTTTATTAGAGCAGTTAACGTTGTTGTTGTTTTTACCAAATGACTA GTCACCATTTTTGTTTATCATGAAAGACCCTGAATGTAGACCGAGCACCT TACCTCAGACCGTAGCTCCTCCTACAACTTATGTTGTGTTGGTTGACCCT ATCAGACACTTCTCCCATAATCCCCCACCACTTTCCCCATTTCATTGCAG TTTGTTTTCATATTTCCCTGCAGTACTGACAACCAGCGTGCATGGGCATT GGAGCTGCAGAAAACGATTTCCCGCGACCACAAGTACATCCTGGTGGCGT CAGACCAGCTGGTCGGTGTGTGTCTGTACGTCTTCATCCGGCCGCAGCTC GCTCCCTTCGTCAGGTCAGAGGTCGTGGGTTCATACTATTAAATCAAAGG TCACTGGGGTTATATAAAGTCAGAGGTCATGCATGTTACAAAATTGCTGA ATAAGTTTGTTTCTGCAAATATATAGCAGTATACATGGCTAAGAATGGCA CTGGTGGTGCAGTATCAATAGAGTTACCCAGAGATGATTGTTTGTTACCT CCATGAAAAATGAAGGTATTGTTTTTGGCGTGTCTGTCTGTGGCATGGCG CTCCTGTAACCCTCTTTAGAAAAAGCCCTGATAATTAAAGAACCTCTGGA TGGACGATGTTATTTTGTATGTGGGTAGGCCTTGGAAAGACAAAGGTCAA GGTTGATTTTAGGCCCCCTGGTGTATGACCTTGTTTAACTTGTTTTGGAA AGGGACGTTGTTTGGAACATCTATATAATGTGTGTTTGTTGGCTGATTTA TTAATAAATGTTTGCTTGCTTATTTCCTCAGAGATGTGGCAGTAGACATA GTGAAGACCGGCCTAGGTGGAGCAGCAGGGAACAAAGGTGCTGTGGCCAT CCGCATGCTACTCTTTGGGACATCCATGTGTTTTGTGTGTTCCCACTTCG CCGCTGGGCAGTCCCAAGTCAAGGAGCGCAATGCAGACTTCACGGAAATT GCTAGGGGGCTCTCTTTTCCCATGGTAGGTGGAAGAAGGTTGTAGATTTA AGTTAGTTGCAAACTTACTGTGCTTGCTTATCATTTTTCCAGGGTATTTG TTTATTTAACCCTTGACTGGCCTGGTATTTCAGTTGCAATTTGTTATCAG GCATATCAAGGAGTTATTGTCTTGTGGTTACACTAGAATTCATCAAGGTT TCTGTTGCATGTTTGGTCATTGTTGCTTCAGAATTTTGTCTTTTGCATAC AATTTCTTCTCCAACGCAACTTTTTGGAAACTATAGAAGGGATAACGATA TTATTATCATCCTTATTTATGTGAACACAAACTGACATGATTGTGTCGTT AGGGTCGGACTCTCGGATCACATGACTACATTTTCTGGTGCGGGGACTTT AACTACCGTATCGACCTGACCAACGAGGAGTGCAAGGCTCTGATCGCGGA GGAAAACTGGGGGAAACTACAGACGTTTGACCAACTCAACATCACGAAAC AGCAAGGGGATGTGAGTACAAATCCGAAACTCTGAACCTTCTCCCTGCTG CCTAACTCTGTTACCACTGGTTAATTTGGTGATCAACAGCTACTTAAGAG TGTTAAAGGTTAAAATGAATCAGCAGTTACAAAACTTTCTTGCAAATCTA TGATTTCTAAACTTTCAAACAAATCAACAATCCTGATGCTTCTGTTTCAA ACAAAATCAACACTTCCAACAATTTTAAACAAATCTAGATGCAGTGAATT GTTATTTGGTATTGGTATCGACTTGATTTGATTTGATTTTCAACTGCCAT TCGCACAAAGTTATTTTGGTTCTTGTGTATGAAAAGGTCAGCAAGTCACA TCTATCTGTTAAAAGTATAAATTATTATTATAGACGAAGTAGGACTGTTT CCAGCTTTAAATTTTTTCTGTCCAACCACTTTTTTAGGAGCCCATGTTGT TAATTTTTGTTGTTGAATATGTCATCAGACTTGA

Coding sequence (CDS) from alignment at xfSc0000336:218..6101+

>Blg00004.0 ID=Blg00004.0|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=1204bp|location=Sequence derived from alignment at xfSc0000336:218..6101+ (Branchiostoma lanceolatum)
GCAACAGTCAGGGACCGTCCGGACCAACTGCCTGGACTGTCTGGACAGAA
CCAACTCTGTACAAGCCTTCCTAGGCCTGGAGACCTTACCTAAGCAGCTG
GAGTGCCTGGGACTGAACAGTAAGCCCCAGTTAGTGTCGCGGGTCATCGA
GCTGTACAAGAACATGTGGCAGCAAAACGGCGACCACGTCAGTAAGATTT
ATGCTGGTACTGGAGCGTTAGGCCAGTCCAAGGTTGGTAAGCTGGCAGAC
GGCGCTCGCTCAGTATCGCGTACCATTCAGAACAATTTCTTTGACGGCAC
CAAACAGGAAGCGATCGACATCCTCCTGCTGGGGAACACGTTAAACAGCG
AACTGGCCGACCGCGCTCGAGTTCTCCTGGCAACCAACAACCTCCACTCC
TCCCCTAGCGTCCTGATGTCAATGGTGGAGCGTCACGAGGACTACACGGT
ACCGGAGTCCGTGCGCGTCTGCGTGGGCACCTGGAACGTGAACGGCGGTA
AACACTTCCGTAGCATCGCGTACAAACACCAGTCCATGACAGACTGGCTC
CTGGACAACCCCAAACTCAAGCCAGAGTGCAGCTTTGCAGACAGTAGCGG
GCGGCTGGACTGGAGCGTGGCAGACGAACATCCCGTGGACATCTACGCCA
TCGGCTTCGAGGAGATGGTAGAGCTGAATGCTGGGAACATCGTCATGACT
GCCAGTACTGACAACCAGCGTGCATGGGCATTGGAGCTGCAGAAAACGAT
TTCCCGCGACCACAAGTACATCCTGGTGGCGTCAGACCAGCTGGTCGGTG
TGTGTCTGTACGTCTTCATCCGGCCGCAGCTCGCTCCCTTCGTCAGAGAT
GTGGCAGTAGACATAGTGAAGACCGGCCTAGGTGGAGCAGCAGGGAACAA
AGGTGCTGTGGCCATCCGCATGCTACTCTTTGGGACATCCATGTGTTTTG
TGTGTTCCCACTTCGCCGCTGGGCAGTCCCAAGTCAAGGAGCGCAATGCA
GACTTCACGGAAATTGCTAGGGGGCTCTCTTTTCCCATGGGTCGGACTCT
CGGATCACATGACTACATTTTCTGGTGCGGGGACTTTAACTACCGTATCG
ACCTGACCAACGAGGAGTGCAAGGCTCTGATCGCGGAGGAAAACTGGGGG
AAACTACAGACGTTTGACCAACTCAACATCACGAAACAGCAAGGGGATAC
TTGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00004.0-exon-xfSc0000336-1570713199:218..299Blg00004.0-exon-xfSc0000336-1570713199:218..299Branchiostoma lanceolatumexon
Blg00004.0-exon-xfSc0000336-1570713199:663..812Blg00004.0-exon-xfSc0000336-1570713199:663..812Branchiostoma lanceolatumexon
Blg00004.0-exon-xfSc0000336-1570713199:1603..1768Blg00004.0-exon-xfSc0000336-1570713199:1603..1768Branchiostoma lanceolatumexon
Blg00004.0-exon-xfSc0000336-1570713199:2902..3093Blg00004.0-exon-xfSc0000336-1570713199:2902..3093Branchiostoma lanceolatumexon
Blg00004.0-exon-xfSc0000336-1570713199:3699..3813Blg00004.0-exon-xfSc0000336-1570713199:3699..3813Branchiostoma lanceolatumexon
Blg00004.0-exon-xfSc0000336-1570713199:4341..4481Blg00004.0-exon-xfSc0000336-1570713199:4341..4481Branchiostoma lanceolatumexon
Blg00004.0-exon-xfSc0000336-1570713199:4949..5141Blg00004.0-exon-xfSc0000336-1570713199:4949..5141Branchiostoma lanceolatumexon
Blg00004.0-exon-xfSc0000336-1570713199:5470..5628Blg00004.0-exon-xfSc0000336-1570713199:5470..5628Branchiostoma lanceolatumexon
Blg00004.0-exon-xfSc0000336-1570713199:6096..6101Blg00004.0-exon-xfSc0000336-1570713199:6096..6101Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00004.0Blg00004.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0000336genomexfSc0000336:218..6101 +
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00004