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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000230:214439..222226- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00113771 ID=BlTCONS00113771|Name=BlTCONS00113771|organism=Branchiostoma lanceolatum|type=mRNA|length=7788bp|location=Sequence derived from alignment at Sc0000230:214439..222226- (Branchiostoma lanceolatum) GTCAAATCCAAACCATAATTGTCCACACACCTTATCAATTCCTACCCATG
TTACTTACTTTATCTCCTTCTGTTGACATTTCTTGATTCTAAATCTTTAC
AAGACAGACTGAAACCAGAAACTCAACTTGTAAATGGCATCTGAGGAAAT
TCTTGGCCAAGCCTGGCTTATCCTTGACAAAACAATAACCCTCTGTTGAA
ATCTGATCTGTCTGTTTTTCCAGTCATGCTTCCTGCTGGCAGGACACATC
TGGGAATGGCGAAGGAAACCCCTAAAAGTGGTCTGTGGGCAGACTTGATG
AGAAACACATTCCAGGGAAATTTTACAGGGTTCAAAAGGTTAGTAGTAGT
CAGGCAGGAATCAGTGCGACATGGCCTCCCTGGTTTGCAGTGCTGTGGTC
CTGGCTCTGTTCTTGAGTGGTGTGACTGCTCAAGATGGTGAGGAGGATGC
TATTGCACTACCAGTGGATCCATACTATGACAGTGTGGATCCAATAGAGG
AATATCCTCCCGGTGAGGACTACCCTCCCTATGATGACTACAGTGACCTG
GATGTTGTGGTGACTGCACCTCCATTCCAGCCCACCCCTCCACCCAGACG
ACAAGCCCCTCCGCCTGATCCTCAACCACCTGCACAGGTCCCTGCACCTC
CTCGTGGCTATGACTACGGTTCAGAGTCGGACTACTACGACGGCTATAGC
TATGAACGGCAGATTGAAGAGGACCAGAGAAGAGAAAGGATGTACCAAAT
GGAGTTCCAGCTGAGAGAAGCCCTGGCAGAACTAAGGCAACTGAAGTCTC
AACACTCAACAACGAGGCTGGTGGTGCAGAACATGAACAGCAAACTTTTT
TCTGGTAAATATATCATCATCTATAGGATAAATAATGCATAATTGATGGA
TAAATTATGAATTAGGCAGAACACCCATTCCAAGATTGTTTGCCTAAAGT
TAGTTCAAGGCATGCTAGGTCAACATGTCAATCTCGTTAACTCTATGACC
TCTGAGCTTGCCAAGGGTAAAACCATCTTGGGTTGAGTTAGACAGGGTCA
GTGACCCATAATGATATGGTTTGTAATGTAAGGCTTTGTTTTGAATTTTG
CATTTTAGAAATGTTGTCCTTTCTTCTTATATCAAATATTGTAGTTCATT
GACAGAATGCAAGGATTCGTAATCTTTGATGCTGTATGATGTATTTTCCA
AGGCCCAGCAATAGAAAAAAAATCTTCATCTGTAATGCTAGGAAAGCTGG
CCATTCTGGTTGATACCAGTAGATTTATAGACTAACACCTGATTGTGAAC
GCATTGCATTATCCTAATGAGCCTGCCCAGGAGAAAAGGAAGTTTAGGCT
CCTTATAACTTCCTTGGTTCATAATCTTCAAAGATTTACTTTACTTACTT
ACTTTCAAAGATTTAAAACAATCAATTGGTGCTAAGTTTGCAATTTTTCA
CAAATCTTGGCACAGTGGTATGACCGGATGTACAGTAATGGCTCAGATCC
CAGATGAAAGTATGTACAAACATGCCAACAACTTCAGGTTTTAGATTAAA
ATCAGGCAGATTCAAGGACAATCTATGGGGGGGCCGTAAGAGAAGATTCT
GCCAAAAGTAAGAGATTAGCTACCATCACCTTACTTAACACAGCAGTTGT
CCGGCTGGCTGACAGCACTAATAGCATGATTTTACTGTTGGTTGATACAG
CAGCCTGGTAAGTTTGCATCTGCTCTGAAAGGTAATAGCACCAGGATGGT
ACCCACTACTCAATGCCCCAGTTGTGATTGTTGCATTATCTTGATATAGA
CAATAACTTTATATGAAGAAAAATGTAACATACACATGTTTAATAACCTT
TTTCCATTCTTCAAGATATGCTTCCCAGCATGAATGAAAAAGTCAATGAA
TTTGGGAGAAAGGTGGAAAAGAGTGGAACAGATATTGCAAGGTAAGTATT
CCTTCAAAACAGATATATTCCTCCCGTCCTTGTCAGTCCATTCAAGGGTG
ATTGGTACTGGCTTTGAATCATTCAAAATTGGATGATTTCGCTGTTATTC
TGCATTAAGCTAACCTGGCAATCTGGAAAGTTATGGTAACCATACCAATG
TGAGCTTGCAGCTATCTCTAACTAGTCTAAGAGTGCTGCCTGCCTGCCCA
GTTCATTGGCACACACTGTGGAATTTTAACGGGGTTTGTATCAATAATAT
CGCTCACTCAATCAGGAATATCTCAAAACGTCAGCTGAAAGACAGGCTGC
CAAAAACAAGCCTATGCTTTGCAGACTGACTAAACAATCCTAGCCTGGAG
AACAGTGGCCAAGCTAGCAATAACCTCATTCATACTCTTTATGAAATGTT
AACCATGCAAGACCACTGCAACGTTAGACATTTCTAGATGATCTCCATTT
ACATGTAACAATACCTTTGGTCCTAAAGATACAACCAGCGCCTGACAGAG
ATAGAGCAAGGCATGGAGGAGAACAAACTACTTGGATCTACTGTCACATC
TATGGAGCAGAAGACCAACAGGCTGGACAACATGATCAACGAACATGACA
ACAAGCTGCTGAGGTTGGAGAACATGTACAAAGGCACCATAGCTCGCCTG
GAGACACGCCTGTCACAGGTGGAGAGTAACACTGGTAAGGAGGCTTTTCA
CTGGTGCACTCACTGTATATGCTGTAATTAGCCAGCAGATCACAAGCAAA
CTATTACAGCAGCAGATCTATGTACAACATGAGATGATAAGCTATTGCAT
CCTCCTATTCTGCTAGGATGCCTATACTTTCAGATGAAACATGTGGCTTA
CCTTAAGTCCAAGTTAATGCACGCGCAAGGACCTCAGATTTGCACAGACT
GGTTTTATATTACTCACCCTATAGCTAAATAAACAGACCATGTAACAACT
GCAGGGGTGCTACAAGGTCTAGTCCCTCCTGTGGCCTTGGTAATGTGTGA
AGTTGGGGTGTGCATGTTAATCAGTTCCATGTGTCCCCCCTCCACCCAGC
CGACCAATGGTATAACATGGAGGAGTCTGTACTGGGGCTGGAGAAGCAGG
TCAAGAAGCTGGCTGCCCGTCCTGAGAGGGAGGACCAGGCCGCCAGGATA
GCTCAGGTAGCCTTGTTGTATAATTACAGACAGCGGGTACCCATCTGAAT
AATGAGGCTGTTGTATCCTCCTTGATGGCACCTCCTCGAACATGGGACCC
CATTTAATGTCCCTTCCAAAAGACGTGCAGCACCTGCTAGGATATCCTTC
CACTGATCGTCTGTTTCCACAAAAAGAAATGAATAATTTGACCATATTGT
GAATCGTACAAAGCAGCTGCAAATTGAGCAAATATATGCTATATGCCTTA
CATTGCAAAAAAAAAAAAAATTGGAAAACGGATACTAATGTCCTGGTATG
CTTAAGTCAATTCCAAAGAAAAGAGTGAAAGAACAAAACTGATGAATCTA
TTGTGAGGTATACCATAGTCTTGTGTGTTTAGTCATTTGTTCAACCTTCC
TGCCTGACCACTTTGATTTCATAATGAAAGCAACTTTCTTTTTTGCCAAA
CTTTTTTCTCTTTGCAGTTTTGGGGTTCCCAGAGGATATCATCCCTATTA
TCGAATCAACATGGCCTTAAACATTAATTTCTTGGGTCAGATGGCAGTTC
CTAAGAAGATCTAATCGAGAACTGTCCTTGATAACATTGTTTATGTTGGA
GGGGTAATTGATTAGGAAAATGAAAACAGCCTATCATAGAAGCGGACTGC
ACCATCAGGGAGGTGCAAAAGGGAACAACTCTGGGATATGCTGTCTCCAA
TGGTTGTATTTCAGTCAGGTACTCATAACTCCAGCATGAAGACCTTGTGT
GGCATATGTTGCACTTATTATTCGTTTGGTTTCACAGCTGAAAAGACAGT
TGTTTGACACAAACAACAAGGCCACTTACCTGGAGAGGCAGATCAACAGC
AATGACAGGGACATCGCAAAGACTGATCAGAGAGTGAAAGAAGTACTGAG
GATGATGCAATACCAAGGGTATGTCTTCCTTTAACCTACTACCTGCCGGC
TAACCCCATAACCAGTACAGATTTGGTGCCGAACAGCTACCTTAGTATTT
AGAGATAACTGATCACCATTACAAAACTTATACTTTTATACAAGACAACA
AGTCTCCCCCAACACACATGCATGTATATGTACTGTACTTCAAAAATATT
TTGTAGCTAACATCACCAGTATGATTGTCTGATTTGCTTCTAATTTTTAC
AAAATATTCTACTTTTGTGTCCCCTTTCCATCTTACAATCCAGTTAGTAA
TCATGATATAATGACCTATATTTATTCAAATCATTTATAGATTTGACTCT
TCCAGGTTCAGTCAAGCACCAGAGCCTCTGTGATACCATGTACAAACACC
CCACAGATTCTAAGTTGTAAAGACAGAGGCTTGAAAGCCATCAATGTTAA
TATGGATGTTATCAAACAGGTCACTTGAAATAAATTTTGGAGAAGTGAAT
ACCTGCAAGCCGCCAGGCTCCATGACACTGGGCGGGGGAACATCGTTAGA
ACATATTCCATTCTTAACGGACGTGTGCAATGACACAGTTTGTGTATAAA
ATCCCCCCTATGACGAAATGCTTTTGTGTTGTTCAAATTGGTCTATTGTA
CTCATGTTGATCCTGGTGTGTGTAGTCAGGAGCAGGCCCGTGGTGCTCCC
CTGGCGATACAAGACGAGTACATCAACAAGATGTCCCAACTGGAGACACA
GTTAACCCAAGACAGAGGCAGGTCAGTTTGAGTTTGTCTTATCAGTATGT
CAACACCTTATCTTCCTCAGATGTCTCCTATGATGATGAGAATTGTTGTA
CATTTGTGTTGTACAGATCCTCTCCCACAGAGCTGGGAGATGGCTTTGTT
GGGGACCTAGGTGAAAACCTGTACAACATAGATTATGGATTTTCAAATCA
TAAAACATTAATCATTGGCACTGGCTTTTACCAAATGTAATTTGAAATGC
TTGTTTCTTGTTACTCATCTGATTTTTCTTCAGGGTTACATCGTTGGATC
AAAGATGTAACATCTTGGAGCGCCAGCTGGGGGCCTACTCACAAGCATTC
AACCAGATTAAAGACAAGGGCTGCTGTGATGATTTGGATGTCACATCACT
GCCTTCTGGGATCCCAACAGGTCCACACACTTATACTTCCTTGGTGGAAA
ATATAAAGTAGTAAATGCCTGCCCTAGTCTTTAAATGTAGCAATCCATGC
AAGTATTTGTGTATTNTGTTGGGGACCTAGGTGAAAACCTGTACAACATA
GATTATGGATTTTCAAATCATAAAACATTAATCATTGGCACTGGCTTTTA
CCAAATGTAATTTGAAATGCTTGTTTCTTGTTACTCATCTGATTTTTCTT
CAGGGTTACATCGTTGGATCAAAGATGTAACATCTTGGAGCGCCAGCTGG
GGGCCTACTCACAAGCATTCAACCAGATTAAAGACAAGGGCTGCTGTGAT
GATTTGGATGTCACATCGCTGCCTTCTGGGATCCCAACAGGTCCACACAC
TTATACTTCCTTGGTGGAAAATATAAAGTAGTAAATGCCTGCCCTAGTCT
TTAAATGTAGCAATCCATGCAAGTATTTGTGTATTCATTCATGATATCAC
CATTGATCGAGAGCCAGAACAACTCTGCTCCGAGAGTTACAGGTAGGCCC
ACTACGGCTGAAACCATGTGTTCTTTCCAGCAGTTGACCATTGTCTACCA
TCAATCCTTTAAACAACATGAGTCTTAAGTGATTAGTTATGTCAATGCTT
GCAGCAACTGATGGGTACATTGTCTCCCCATTTAGAACAATTCACTTAGG
TTTTTATACTTGACAACCTTTATATTTGTATTGCATTTAGTTATAAGTTC
TGGAAGGTTCCCCGAGACTGGTGGTAGATCATCATCGGGTCTAGATCTGG
ACATCCCAGGATTCTCTGCTCCTCGGGCCAACGTAAATGAGGCCGTCCCT
GCTCCTGCTCCTGCCCCAAGACCGGCCCCACCTGTCACCTTCAACCAGCC
TGCCCCCGCTCCACCACGTTCCCAACTGTCCCTGCCAACACAAATCCCAT
CATCCTTTGAGGACCAACAAGGAGGGGCATCAGAAGTGGTCCAACCAACA
GCCCCACCTGCACCCCCCAGAGGTCGCCGACCCACGGGTGGGAGGAGGGA
CCCCGAGGTGCCAAGCACCCCACGGAGAAATGGCAACAGAAGGGAGAGAC
CAAGGAAGCCAGAGGCACCACCACCACGACCACAACCACCACCACGGCCA
CAACCACCACCTGTACCTCCACCTGTACAACCACCAAGCCGGAGTGTGGA
TTCAGAATATGAAGGATACCCAATCGTGCCAGAAGTCAGCAGGGCTGAAC
TCGGAGAAATCAAACCAATAGACTGCTCAGAGATATATGACTATGGACTT
GAGGCCAGTGGTGTGTACTACATCTACCCCTCTACACTAACCCAGCCTGA
GAATGTGCCTGTGTACTGTGACATGACTACAAACGGTGGTGGGTGGACAG
TGTTCCAGAGAAGGCTGGACGGGAGGGAGAACTTCAACAGGAATTACTCA
GACTACACGAATGGTTTTGGGACTCCAGTAGCAGAGTACTGGCTGGGCAA
CACGATCCTGCACCACATCTCCCACCAGGACGATTACGCACTCATGGTGG
AGCTGGAGGACTGGGAGGGCAATGTTGTGCACGCCGACTATGACCAGTTT
ACTGTTGGTGATGAAAGTCTCAAGTTCAGACTGAATCTGGGAAGATACAG
TGGAACTGCTGGTGACTCGATCAGAGGTAAGAGAAGAACATTTACAATGC
ATCATACATTTGTGCAATCTAGTAAGTTCTTGACATGGTGAATTTCTCTC
CTTTGATTTACCAGTGAATAGATATTCTATATCAATGGAATAAACCAAAC
TCATGATATCTACCACAATTCACCTATCCCTTGCAGGCAACACACTCAGT
GGCAACAACAGAATGCCCTTCTCCACATACGATGCTGACAATGACAAGTC
CAGAGCCAACTGTGCCACCACTCACAAGGGAGGCTGGTGGTACAACCAGT
GTGGGGACTCCAACCTGAATGGTGTGTACTACTCAGGAGGTGTGTACGGA
GGTGAGGCCGACGGCATCTACTGGTACTCCTGGAAACAGGACACCTTCTA
CTCCCTTAAGAGGGTAGAGATGAAGATCAGACCAACTTACTTCTAAAACA
CACCAGTAGTGGGTTCAGCTAGCTTTCAACTTTCATTCATATACCAGAAA
TGATAAACTTATAGCCAGTGTCATTCTAATGAATTGTTCAGCTACTGTTT
TAGAGACTATTTTATAAACACAACATCTATAGAGACAGTTGCAAAAATAA
AAGGGTGGTGAAGGAAAGATTAGTTCTTTATTTTTCCTGAGAGTATAAGT
TGAATGTGGCAAGAAATACTTAACATATAAGTACATGTATATCACACTTT
GTTCTGCAACATTAGTCTTTTCTCACTGAAGAAAAAGTAATGATGATAGG
TGCCTCGTAGCTCTTCTACCAAAGATCTAGACCACATAACTACACGTAAT
TATAGAGGATACTTTCATGATTGTAACTGAAAAGTCTATGTTTTCCTGAC
ATAACAGTTTAGTTACCATTGACATACATGTACGCATATAAGTGTTAGTT
AACACTTACATATGTACTCTTCTGCTGTACACTTGCGGTTGTATTAAGAG
TTCTGAAGTGCCTTCAAAAGGCATAAATACATCTATCC Coding sequence (CDS) from alignment at Sc0000230:214439..222226- >BlTCONS00113771 ID=BlTCONS00113771|Name=BlTCONS00113771|organism=Branchiostoma lanceolatum|type=CDS|length=2433bp|location=Sequence derived from alignment at Sc0000230:214439..222226- (Branchiostoma lanceolatum) ATGGCCTCCCTGGTTTGCAGTGCTGTGGTCCTGGCTCTGTTCTTGAGTGG TGTGACTGCTCAAGATGGTGAGGAGGATGCTATTGCACTACCAGTGGATC CATACTATGACAGTGTGGATCCAATAGAGGAATATCCTCCCGGTGAGGAC TACCCTCCCTATGATGACTACAGTGACCTGGATGTTGTGGTGACTGCACC TCCATTCCAGCCCACCCCTCCACCCAGACGACAAGCCCCTCCGCCTGATC CTCAACCACCTGCACAGGTCCCTGCACCTCCTCGTGGCTATGACTACGGT TCAGAGTCGGACTACTACGACGGCTATAGCTATGAACGGCAGATTGAAGA GGACCAGAGAAGAGAAAGGATGTACCAAATGGAGTTCCAGCTGAGAGAAG CCCTGGCAGAACTAAGGCAACTGAAGTCTCAACACTCAACAACGAGGCTG GTGGTGCAGAACATGAACAGCAAACTTTTTTCTGATATGCTTCCCAGCAT GAATGAAAAAGTCAATGAATTTGGGAGAAAGGTGGAAAAGAGTGGAACAG ATATTGCAAGATACAACCAGCGCCTGACAGAGATAGAGCAAGGCATGGAG GAGAACAAACTACTTGGATCTACTGTCACATCTATGGAGCAGAAGACCAA CAGGCTGGACAACATGATCAACGAACATGACAACAAGCTGCTGAGGTTGG AGAACATGTACAAAGGCACCATAGCTCGCCTGGAGACACGCCTGTCACAG GTGGAGAGTAACACTGCCGACCAATGGTATAACATGGAGGAGTCTGTACT GGGGCTGGAGAAGCAGGTCAAGAAGCTGGCTGCCCGTCCTGAGAGGGAGG ACCAGGCCGCCAGGATAGCTCAGCTGAAAAGACAGTTGTTTGACACAAAC AACAAGGCCACTTACCTGGAGAGGCAGATCAACAGCAATGACAGGGACAT CGCAAAGACTGATCAGAGAGTGAAAGAAGTACTGAGGATGATGCAATACC AAGGTCAGGAGCAGGCCCGTGGTGCTCCCCTGGCGATACAAGACGAGTAC ATCAACAAGATGTCCCAACTGGAGACACAGTTAACCCAAGACAGAGGCAG GGTTACATCGTTGGATCAAAGATGTAACATCTTGGAGCGCCAGCTGGGGG CCTACTCACAAGCATTCAACCAGATTAAAGACAAGGGCTGCTGTGATGAT TTGGATGTCACATCGCTGCCTTCTGGGATCCCAACAGTTATAAGTTCTGG AAGGTTCCCCGAGACTGGTGGTAGATCATCATCGGGTCTAGATCTGGACA TCCCAGGATTCTCTGCTCCTCGGGCCAACGTAAATGAGGCCGTCCCTGCT CCTGCTCCTGCCCCAAGACCGGCCCCACCTGTCACCTTCAACCAGCCTGC CCCCGCTCCACCACGTTCCCAACTGTCCCTGCCAACACAAATCCCATCAT CCTTTGAGGACCAACAAGGAGGGGCATCAGAAGTGGTCCAACCAACAGCC CCACCTGCACCCCCCAGAGGTCGCCGACCCACGGGTGGGAGGAGGGACCC CGAGGTGCCAAGCACCCCACGGAGAAATGGCAACAGAAGGGAGAGACCAA GGAAGCCAGAGGCACCACCACCACGACCACAACCACCACCACGGCCACAA CCACCACCTGTACCTCCACCTGTACAACCACCAAGCCGGAGTGTGGATTC AGAATATGAAGGATACCCAATCGTGCCAGAAGTCAGCAGGGCTGAACTCG GAGAAATCAAACCAATAGACTGCTCAGAGATATATGACTATGGACTTGAG GCCAGTGGTGTGTACTACATCTACCCCTCTACACTAACCCAGCCTGAGAA TGTGCCTGTGTACTGTGACATGACTACAAACGGTGGTGGGTGGACAGTGT TCCAGAGAAGGCTGGACGGGAGGGAGAACTTCAACAGGAATTACTCAGAC TACACGAATGGTTTTGGGACTCCAGTAGCAGAGTACTGGCTGGGCAACAC GATCCTGCACCACATCTCCCACCAGGACGATTACGCACTCATGGTGGAGC TGGAGGACTGGGAGGGCAATGTTGTGCACGCCGACTATGACCAGTTTACT GTTGGTGATGAAAGTCTCAAGTTCAGACTGAATCTGGGAAGATACAGTGG AACTGCTGGTGACTCGATCAGAGGCAACACACTCAGTGGCAACAACAGAA TGCCCTTCTCCACATACGATGCTGACAATGACAAGTCCAGAGCCAACTGT GCCACCACTCACAAGGGAGGCTGGTGGTACAACCAGTGTGGGGACTCCAA CCTGAATGGTGTGTACTACTCAGGAGGTGTGTACGGAGGTGAGGCCGACG GCATCTACTGGTACTCCTGGAAACAGGACACCTTCTACTCCCTTAAGAGG GTAGAGATGAAGATCAGACCAACTTACTTCTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
BlTCONS00113771-exon-Sc0000230-1564993656:221373..222226 | BlTCONS00113771-exon-Sc0000230-1564993656:221373..222226 | Branchiostoma lanceolatum | exon |
BlTCONS00113771-exon-Sc0000230-1564993656:220286..220361 | BlTCONS00113771-exon-Sc0000230-1564993656:220286..220361 | Branchiostoma lanceolatum | exon |
BlTCONS00113771-exon-Sc0000230-1564993656:219593..219798 | BlTCONS00113771-exon-Sc0000230-1564993656:219593..219798 | Branchiostoma lanceolatum | exon |
BlTCONS00113771-exon-Sc0000230-1564993656:219121..219227 | BlTCONS00113771-exon-Sc0000230-1564993656:219121..219227 | Branchiostoma lanceolatum | exon |
BlTCONS00113771-exon-Sc0000230-1564993656:218209..218339 | BlTCONS00113771-exon-Sc0000230-1564993656:218209..218339 | Branchiostoma lanceolatum | exon |
BlTCONS00113771-exon-Sc0000230-1564993656:217456..217551 | BlTCONS00113771-exon-Sc0000230-1564993656:217456..217551 | Branchiostoma lanceolatum | exon |
BlTCONS00113771-exon-Sc0000230-1564993656:216687..216823 | BlTCONS00113771-exon-Sc0000230-1564993656:216687..216823 | Branchiostoma lanceolatum | exon |
BlTCONS00113771-exon-Sc0000230-1564993656:215401..216336 | BlTCONS00113771-exon-Sc0000230-1564993656:215401..216336 | Branchiostoma lanceolatum | exon |
BlTCONS00113771-exon-Sc0000230-1564993656:214439..215240 | BlTCONS00113771-exon-Sc0000230-1564993656:214439..215240 | Branchiostoma lanceolatum | exon |
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000230 | genome | Sc0000230:214439..222226 - |
Properties
Property Name | Value |
GeneID | BlCUFF055776 |
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