TCONS_00044606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044606
Unique NameTCONS_00044606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044606 ID=TCONS_00044606|Name=TCONS_00044606|organism=Clytia hemisphaerica|type=transcript|length=878bp
TTACAAACGTATGACCGTTTTTTACTCGACATTctgagttttttattttg
agaagtTTTTTCTTGTCTCGTTTTTTCTTGATATTtgagattttgtgatt
tttctctGCTGAGATTTTTCTGTAATTCTTGAGACCATTGCTCCAAGATT
TTATCTTTGATTCTTGAGACTTTTTTGCTCCAAGATCTGTGTTTTTACTC
GTTTTTCCTTTCTGCCTGGGTGGTGAAAGGGCTTTGTTTCTGTATCTCTG
GTCCATAGGATTAGGCCTGTTCAAAGTATTCCTTATTCTTCccggttgtt
ttttttctcctgtggGAAGAGGAGAACATAAAGTTTGAATTGCGATTCTG
AATTTTTTCttgacgattttttttttcgaaattccgtCTGAATTCGTAGA
TTTATTGGACATTTtactgacaatttttttttgacagatatttttttgtt
ttgattttttgcactcaAGAAATTCTgttcaaagttgattttttggCTAG
AGAAGTTTGCTTATACTTTCTcgtttttgtcaaattttaaagTTTCCTGC
TTTGCTATAGTGAATCTCTCTTTCTATTTACTCTTGGCTATTGTGATTGT
GTTTCGCTagagtttttctttcaaaaggtgAGGATTGGTGGAATTCTATT
GTTTGAAGTTTCCCCGTCGTTTTTAGATCAGCTGTTGATAGCtgtatttg
agattttttatttaatttggtaATTTGATCTAgtgttgaaattttccttt
ccTTGATTGGCACGCGtcggaaaatttccaaatcttttcTTTCTCTGATT
TAATTGGCTTTTGTTTGAAGTTTCCGTCTTTTATATCACCATGACACTGG
ATCGAAAACTCAAGCGGAGAGAAGGCCT
Run BLAST on NCBI

protein sequence of TCONS_00044606-protein

>TCONS_00044606-protein ID=TCONS_00044606-protein|Name=TCONS_00044606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MSNKSTNSDGISKKKIVKKKFRIAIQTLCSPLPTGEKKQPGRIRNTLNRP
NPMDQRYRNKALSPPRQKGKTSKNTDLGAKKSQESKIKSWSNGLKNYRKI
SAEKNHKISNIKKKRDKKKLLKIKNSECRVKNGHTFV
Run BLAST on NCBI

transcript from alignment at sc0005871:3..880

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044606 ID=TCONS_00044606|Name=TCONS_00044606|organism=Clytia hemisphaerica|type=transcript|length=878bp|location=Sequence derived from alignment at sc0005871:3..880 (Clytia hemisphaerica)
AGGCCTTCTCTCCGCTTGAGTTTTCGATCCAGTGTCATGGTGATATAAAA
GACGGAAACTTCAAACAAAAGCCAATTAAATCAGAGAAAgaaaagatttg
gaaattttccgaCGCGTGCCAATCAAggaaaggaaaatttcaacacTAGA
TCAAATtaccaaattaaataaaaaatctcaaatacaGCTATCAACAGCTG
ATCTAAAAACGACGGGGAAACTTCAAACAATAGAATTCCACCAATCCTca
ccttttgaaagaaaaactctAGCGAAACACAATCACAATAGCCAAGAGTA
AATAGAAAGAGAGATTCACTATAGCAAAGCAGGAAActttaaaatttgac
aaaaacgAGAAAGTATAAGCAAACTTCTCTAGccaaaaaatcaactttga
acAGAATTTCTtgagtgcaaaaaatcaaaacaaaaaaatatctgtcaaaa
aaaaattgtcagtaAAATGTCCAATAAATCTACGAATTCAGacggaattt
cgaaaaaaaaaatcgtcaaGAAAAAATTCAGAATCGCAATTCAAACTTTA
TGTTCTCCTCTTCccacaggagaaaaaaaacaaccggGAAGAATAAGGAA
TACTTTGAACAGGCCTAATCCTATGGACCAGAGATACAGAAACAAAGCCC
TTTCACCACCCAGGCAGAAAGGAAAAACGAGTAAAAACACAGATCTTGGA
GCAAAAAAGTCTCAAGAATCAAAGATAAAATCTTGGAGCAATGGTCTCAA
GAATTACAGAAAAATCTCAGCagagaaaaatcacaaaatctcaAATATCA
AGAAAAAACGAGACAAGAAAAAacttctcaaaataaaaaactcagAATGT
CGAGTAAAAAACGGTCATACGTTTGTAA

Coding sequence (CDS) from alignment at sc0005871:3..880

>TCONS_00044606 ID=TCONS_00044606|Name=TCONS_00044606|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at sc0005871:3..880 (Clytia hemisphaerica)
ATGTCCAATAAATCTACGAATTCAGacggaatttcgaaaaaaaaaatcgt
caaGAAAAAATTCAGAATCGCAATTCAAACTTTATGTTCTCCTCTTCcca
caggagaaaaaaaacaaccggGAAGAATAAGGAATACTTTGAACAGGCCT
AATCCTATGGACCAGAGATACAGAAACAAAGCCCTTTCACCACCCAGGCA
GAAAGGAAAAACGAGTAAAAACACAGATCTTGGAGCAAAAAAGTCTCAAG
AATCAAAGATAAAATCTTGGAGCAATGGTCTCAAGAATTACAGAAAAATC
TCAGCagagaaaaatcacaaaatctcaAATATCAAGAAAAAACGAGACAA
GAAAAAacttctcaaaataaaaaactcagAATGTCGAGTAAAAAACGGTC
ATACGTTTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028224XLOC_028224Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044606-proteinTCONS_00044606-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044606-exon-sc0005871-1491911889:3..880TCONS_00044606-exon-sc0005871-1491911889:3..880Clytia hemisphaericaexon
TCONS_00044606-exon-sc0005871-1510915933:3..880TCONS_00044606-exon-sc0005871-1510915933:3..880Clytia hemisphaericaexon
TCONS_00044606-exon-sc0005871-1575043694:3..880TCONS_00044606-exon-sc0005871-1575043694:3..880Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005871supercontigsc0005871:3..880 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.142143	0.139556	0.605218	0.151445	53.3412	28.2245	2.44721	3.33392	0.328542	0.738083	0.828813	0.176592	0.141077	0.225668	0.365445	0.597144	0.253044	0.266765	0.0666206	0.469091	0.126624	0.584041	0.0628887	0.240579	0.341622	1.2375	0.274318	0.192693	0.197525	0.179908
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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