TCONS_00044524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044524
Unique NameTCONS_00044524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044524 ID=TCONS_00044524|Name=TCONS_00044524|organism=Clytia hemisphaerica|type=transcript|length=1310bp
CAGAAAATCAATGAAAGAACAATCAAATACCATCGGAAAAAGTATAAATG
CGCTCAGTACAATAAAGGTGATCAAGTCTTCATTAACTTTACAAAAAAAG
GGGGCAAAGGTTATAAAACCAGGCATGTGATATTAGGTCaagttttaaag
aaaggaaATGATGGGGATCGCTACTACCTCAAATTTACGAATCCTACCTC
CGAAGAAGTTGAGCGAAAGTGGTACAGCGTAGAAGATTTGGCAGGTTCGA
ATTGTGAATCGAATCAGGCAAGGAAATCAAAGAAAGCTCACAGAAAAAAG
TATCTAATCCCGCTGTCCAAACAAAACCGCATTGACACGTTTACAGACCA
AGGATACACCCTAACCTATGATCCTCCAGGTGATGGGAATTGTCAATTTC
ATGCAGTTGCTCGTGCCTTAGCCACATTTGGAATGTACCGTTCCGCACAT
ACTTTACGAAATGACGTCGTCAGATACTTGtcggaaaatgaaaatgacca
GGATGGCTGGCCTCTTGAATTGTTTATGGGCATGCCGATGAGTGAATACA
TCAGTGAAATGGCAAGGGATGCAACGTACGGTGACCATCTCACACTCAGA
GCTATGGCCAACCTATTCAACATTCAAATAACCGTCGTTTCGACCATTGG
CGCGGATGGGCTTGTCAATATTTCACCTTCGACAGAACAACCAATCGGAA
GAATTACACTTGGGCATTTTGCTGAGGGTGACGGTGACCACTACGTTCta
ttaaataaaatagaaaGAGACGAAGATAACATTGATTTTGTGGTTGAAGA
TGCACAGGTAAGATTTTTTCATTGACTGGTCTGAAATATTAGAGTGGTAG
AGTAAAGATTACCTTTTGGATAACGTCATTTCGGTGAAGCGAATAGCGCa
cgtaaaaatttgaaaatttggagtCATTTTTTAATGCATTCCCGGTAATA
TAAAGTTATAGGAGTTAGATAAAAACATTGTCAAGTTAAGAGACCCTGCT
TTGCCTTTTTAAAGTGGCCATGACGAAGTAAGTGTAAGTATAGTGTCTAA
AGCAGGAAATCTTTATTTCAGCCTTCAAATGAGCATGTTCAAGAGCTAAT
ACCAAGTGATCATTCTACTGAAGAAGATGTCGTGGATGATACCCCTGAAG
GTTCCAACAAATCAGATACAAATTCTCCATCGGCTGATAATCGACCAGAA
AGATCAAAACGGAAGCCATTAAGACTTAGACACTCGATTGGAAGTCCTAG
TCTGTCATTTGCGAAAACGTCGATGACAAACTCAGcATCCCCATTCGATG
AAATGCCGCC
Run BLAST on NCBI

protein sequence of TCONS_00044524-protein

>TCONS_00044524-protein ID=TCONS_00044524-protein|Name=TCONS_00044524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
QKINERTIKYHRKKYKCAQYNKGDQVFINFTKKGGKGYKTRHVILGQVLK
KGNDGDRYYLKFTNPTSEEVERKWYSVEDLAGSNCESNQARKSKKAHRKK
YLIPLSKQNRIDTFTDQGYTLTYDPPGDGNCQFHAVARALATFGMYRSAH
TLRNDVVRYLSENENDQDGWPLELFMGMPMSEYISEMARDATYGDHLTLR
AMANLFNIQITVVSTIGADGLVNISPSTEQPIGRITLGHFAEGDGDHYVL
LNKIERDEDNIDFVVEDAQVRFFH
Run BLAST on NCBI

transcript from alignment at sc0005723:74..2281-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044524 ID=TCONS_00044524|Name=TCONS_00044524|organism=Clytia hemisphaerica|type=transcript|length=2208bp|location=Sequence derived from alignment at sc0005723:74..2281- (Clytia hemisphaerica)
CAGAAAATCAATGAAAGAACAATCAAATACCATCGGAAAAAGTATAAATG
CGCTCAGTACAATAAAGGTGATCAAGTCTTCATTAACTTTACAAAAAAAG
GGGGCAAAGGTTATAAAACCAGGCATGTGATATTAGGTCAAGTTTTAAAG
AAAGGAAATGATGGGGATCGCTACTACCTCAAATTTACGAATCCTACCTC
CGAAGAAGTTGAGCGAAAGTGGTACAGCGTAGAAGATTTGGCAGGTTCGA
ATTGTGAATCGAATCAGGCAAGGAAATCAAAGAAAGCTCACAGAAAAAAG
TATCTAATCCCGCTGTCCAAACAAAACCGCATTGACACGTTTACAGACCA
AGGATACACCCTAACCTATGATCCTCCAGGTGATGGGAATTGTCAATTTC
ATGCAGTTGCTCGTGCCTTAGCCACATTTGGAATGTACCGTTCCGCACAT
ACTTTACGAAATGACGTCGTCAGATACTTGTCGGAAAATGAAAATGACCA
GGATGGCTGGCCTCTTGAATTGTTTATGGGCATGCCGATGAGTGAATACA
TCAGTGAAATGGCAAGGGATGCAACGTACGGTGACCATCTCACACTCAGA
GCTATGGCCAACCTATTCAACATTCAAATAACCGTCGTTTCGACCATTGG
CGCGGATGGGCTTGTCAATATTTCACCTTCGACAGAACAACCAATCGGAA
GAATTACACTTGGGCATTTTGCTGAGGGTGACGGTGACCACTACGTTCTA
TTAAATAAAATAGAAAGAGACGAAGATAACATTGATTTTGTGGTTGAAGA
TGCACAGGTAAGATTTTTTCATTGACTGGTCTGAAATATTAGAGTGGTAG
AGTAAAGATTACCTTTTGGATAACGTCATTTCGGTGAAGCGAATAGCGCA
CGTAAAAATTTGAAAATTTGGAGTCATTTTTTAATGCATTCCCGGTAATA
TAAAGTTATAGGAGTTAGATAAAAACATTGTCAAGTTAAGAGACCCTGCT
TTGCCTTTTTAAAGTGGCCATGACGAAGTAAGTGTAAGTATAGTGTCTAA
AGCAGGAAATCTTTATTTCAGCCTTCAAATGAGCATGTTCAAGAGCTAAT
ACCAAGTGATCATTCTACTGAAGAAGATGTCGTGGATGATACCCCTGAAG
GTTCCAACAAATCAGATACAAATTCTCCATCGGCTGGTAAAAATATTCAT
TACAATTTGATAATTCATCATTATTGAAATTCTAAAATATACGTACAGGC
TAAACTTTAGGTACGACTCCAGAAGGGCTCCTCTTGAATCTGTCAATTTT
GAAAAGCAAAGAGGGGTCTTAACTATTTTTACTTCTATTCTTTTCCAGAT
AATCGACCAGAAAGATCNGAAGATAACATTGATTTTGTGGTTGAAGATGC
ACAGGTAAGATTTTTTCATTGACTGGTCTGAAATATTAGAGTGGTAGAGT
AAAGATTACCTTTTGGATAACGTCATTTCGGTGAAGCGAATAGCGCACGT
AAAAATTTGAAAATTTGGAGTCATTTTTTAATGCATTCCCGGTAATATAA
AGTTATAGGAGTTAGATAAAAACATTGTCAAGTTAAGAGACCCTGCTTTG
CCTTTTTAAAGTGGCCATGACGAAGTAAGTGTAAGTATAGTGTCTAAAGC
AGGAAATCTTTATTTCAGCCTTCAAATGAGCATGTTCAAGAGCTAATACC
AAGTGATCATTCTACTGAAGAAGATGTCGTGGATGATACCCCTGAAGGTT
CCAACAAATCAGATACAAATTCTCCATCGGCTGGTAAAAATATTCATTAC
AATTTGATAATTCATCATTATTGAAATTCTAAAATATACGTACAGGCTAA
ACTTTAGGTACGACTCCAGAAGGGCTCCTCTTGAATCTGTCAATTTTGAA
AAGCAAAGAGGGGTCTTAACTATTTTTACTTCTATTCTTTTCCAGATAAT
CGACCAGAAAGATCAAAACGGAAGCCATTAAGACTTAGACACTCGATTGG
AAGTCCTAGTCTGTCATTTGCGAAAACGTCGATGACAAACTCAGGTAATC
AGCAGTTTCTCAAACGATTAAAAAAAGTTGTGAAATGCGAGAGTTTCGTA
CTGTTTTTTTGTGTCATTAACCATCGATCTGTTAATCAGCAAAGAAAAAT
TCAAGCTAACATAGAATTATTTATATTTTATAGCATCCCCATTCGATGAA
ATGCCGCC

Coding sequence (CDS) from alignment at sc0005723:74..2281-

>TCONS_00044524 ID=TCONS_00044524|Name=TCONS_00044524|organism=Clytia hemisphaerica|type=CDS|length=825bp|location=Sequence derived from alignment at sc0005723:74..2281- (Clytia hemisphaerica)
CAGAAAATCAATGAAAGAACAATCAAATACCATCGGAAAAAGTATAAATG
CGCTCAGTACAATAAAGGTGATCAAGTCTTCATTAACTTTACAAAAAAAG
GGGGCAAAGGTTATAAAACCAGGCATGTGATATTAGGTCAAGTTTTAAAG
AAAGGAAATGATGGGGATCGCTACTACCTCAAATTTACGAATCCTACCTC
CGAAGAAGTTGAGCGAAAGTGGTACAGCGTAGAAGATTTGGCAGGTTCGA
ATTGTGAATCGAATCAGGCAAGGAAATCAAAGAAAGCTCACAGAAAAAAG
TATCTAATCCCGCTGTCCAAACAAAACCGCATTGACACGTTTACAGACCA
AGGATACACCCTAACCTATGATCCTCCAGGTGATGGGAATTGTCAATTTC
ATGCAGTTGCTCGTGCCTTAGCCACATTTGGAATGTACCGTTCCGCACAT
ACTTTACGAAATGACGTCGTCAGATACTTGTCGGAAAATGAAAATGACCA
GGATGGCTGGCCTCTTGAATTGTTTATGGGCATGCCGATGAGTGAATACA
TCAGTGAAATGGCAAGGGATGCAACGTACGGTGACCATCTCACACTCAGA
GCTATGGCCAACCTATTCAACATTCAAATAACCGTCGTTTCGACCATTGG
CGCGGATGGGCTTGTCAATATTTCACCTTCGACAGAACAACCAATCGGAA
GAATTACACTTGGGCATTTTGCTGAGGGTGACGGTGACCACTACGTTCTA
TTAAATAAAATAGAAAGAGACGAAGATAACATTGATTTTGTGGTTGAAGA
TGCACAGGTAAGATTTTTTCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028147XLOC_028147Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044524-proteinTCONS_00044524-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044524-exon-sc0005723-1575043694:1096..2281TCONS_00044524-exon-sc0005723-1575043694:1096..2281Clytia hemisphaericaexon
TCONS_00044524-exon-sc0005723-1575043694:238..336TCONS_00044524-exon-sc0005723-1575043694:238..336Clytia hemisphaericaexon
TCONS_00044524-exon-sc0005723-1575043694:74..98TCONS_00044524-exon-sc0005723-1575043694:74..98Clytia hemisphaericaexon
TCONS_00044524-exon-sc0005723-1510915933:1096..2281TCONS_00044524-exon-sc0005723-1510915933:1096..2281Clytia hemisphaericaexon
TCONS_00044524-exon-sc0005723-1510915933:238..336TCONS_00044524-exon-sc0005723-1510915933:238..336Clytia hemisphaericaexon
TCONS_00044524-exon-sc0005723-1510915933:74..98TCONS_00044524-exon-sc0005723-1510915933:74..98Clytia hemisphaericaexon
TCONS_00044524-exon-sc0005723-1491911889:1096..2281TCONS_00044524-exon-sc0005723-1491911889:1096..2281Clytia hemisphaericaexon
TCONS_00044524-exon-sc0005723-1491911889:238..336TCONS_00044524-exon-sc0005723-1491911889:238..336Clytia hemisphaericaexon
TCONS_00044524-exon-sc0005723-1491911889:74..98TCONS_00044524-exon-sc0005723-1491911889:74..98Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005723supercontigsc0005723:74..2281 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0322232	0.0314227	0.145939	0.0356946	0.391093	0.137354	0.331424	0.0775688	0.162923	0.0336345	0.750868	0.128763	0.450043	0.267071	0.0365948	0.0392718	0	0.0247938	0	0.0358443	0.0623104	0.0455893	0	0	1.10709	1.20419	0.0883688	0.0943096	0	0.0364391
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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