XLOC_014548 (mRNA) -

Overview
NameXLOC_014548
Unique NameXLOC_014548
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000018_pilon:1658277..1665074+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_014548 ID=XLOC_014548|Name=XLOC_014548|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6798bp|location=Sequence derived from alignment at sc0000018_pilon:1658277..1665074+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACTTCAGGCAGCCTCCAATGGGTGGTGGGTATGGTCAAATGCCGTC TACAGATCATGGTATGCAATACCAACCAAATAACGACAAGTTTCGCATGC AGAATAATAACTTTCCTCGAAGGGAGCGAGGAAGAAGCCCAGGTATATTT TGCAAGATCATTGATATACGATTAGGATTTTATTGGAAAAGTATACTTAA TCAAATTAGTTACAGCTTTCTTAATGTAtcccaaaatttaagttcaggct tgacttaaaaaaatgtttaccgTCAGCCGACTGACTCTTCTCTAAACTTG CTAACCTAAACACTTTTATTGCTATTTCCACAAAGAgaatttctttcttc aaaaattacgaaatgtagacaaaaattccatgaatgaccaaaatagaaaa aatttctgactgactgactgactgaccaatccacctccaaaatctagggt cgggtgacggcaaaccaggAATTTTTAAGTCCAGTCTCAGAGTGATAGCA ATTCCCAAGGGATGTATTTAGTGGATCATGAAACTGTTTTACTTTAGACT GGTTTTTTAAAAACCATTTATTATTTAAGGATAGTTAGATATCAATCAAA TACccatcaaattaaattttggaAGCTTAATAGcaaatgaaaattatgaa agtCTTTTGTTTTGTAAATGAGCCTACCTTAAGtgtatatattttgtttt gtagtGCATATACTTGTAAAAACAAGtacttttaccaaaatgaagGACAG AAAAAGTTCCAAATTcccccaaaaaaaattaagtagcctgtttcatttat tatttgattttatttcattAACAAAGGGTCATCTGATGGTAGATCCAGTG GTTCAGATATTAGTGAAAAAGATTGGAAATGTACTGTCACTGTGAAGAAC ATTCTGACCCGAGAACCAGGTATCCACATGTATAAAATGAAAGGGTCAGC TATTATTTTTATCTATACTGAATGCAATCATTTTTATGACCCGGGTAAAG CCAGAAATAATGAAATGCGTCAGTTCAATCAATTCTTTGGCATTCCATTC TAATTACAAGGTAATAAAAAACCACACCCCTAGgctttttagaattcttt gatctttacattacttattttggcgaatttggcaagattagacaaaattc gccaaaattagttcttgccaaaattaacccctaaaaatcatcaaaatttt tataaggGAAATAGCACAGATTTTTACTGCCATTCGCCAAGATAAGTTCC CTTAATGTATGTGGAAAAATATAAAGACTTGTTCAATCATTAAATCATTC AATCAAACTTCGGTCACTGTGAATTTTGCAGCAACTCGCCAACTCAACTA CCCAACTCACAACTCGCAAATAACCAACTCGTCAACTCGAATTTTACCGT ggctaaaaaataaatatcaaagTCTGTTTCAATCATTAATAATCTGCATC AACcgttcaaacatttttttcttttagatacTGTTTTGGAGGAATCACTC TATCACGAGTTCAAGAAATATGGCGAAATTGTCAACATTATCATCAAAGT GAACAGCAATCAACGATACGCTTATGTACAATATGCACAGTAAGTTCTAA TTGAGTTCTTTCTGATGGCTTCCATCTCAACACTTGCAATTTCATAATCT TTTCCATAGTGtcaacctccccccccccctcagaaACCGGAAGGGCATCT AGGCCAGGTTAGGGGTTAGGGACTAATATTTTGCAATTCTTTTGGGTTAC CTTCCTGTTTTGATGAAGGCTCTGGGGCTGCgtgtattttccaaaaatag gggTACCTGTAAAGTGGGCTGAAACGACGTTTTCACTATTactctcatct tcaatttttgaAGGATTTGATGTATCAATGCAGTTAGTTAGGTAGAAATG CATTAACATACAACGCTTGGATTTGACTGAACCAGCTTAGATTCTGGCTG CTCtcaatttttacagattttaaattgttcggaagatgttctttttgtgt ctttttatttattttctattttgcatttttgtcatgatgtagtagatttt gctgcctttttaggagatttatagatgaaattctacttttatttttattt tttggctgactgaccgaccctcttttttgagTTGCTTGGCCCGTAataca acaaattaaattggcctcgcctaaaggtataaaatttgttaaaaacagCA GTTTTATAATGAATGATCTTGTTTACCTTTACCATTATTTGTAGATCAGA TCAAGCACAAGATGCTACTAGAAGCACTGGGAAATTATTTATGGGACAAG AATTAAAAGTTGCTGTCAAAGGTAAGTTAAAGCATTTATCAACACATGCA GAGATGAGAGCTATTGTTCTCGATTTTCTTCCTCAACTTAAATTAGCTAA AATGTAATTATTTTATCTTTCTATCTTTCTCTATGTAcccttgttttttt caaaaatagactgATTGGGCTTGCACGAACATATATTTTAGTAAAGATGA TGTAATATCAGTGACACAACTCTTCTTTTTGGCTAGAGGATTCTCTTCTA AGACaataagaaaaacgtaaaattACACAGTCACATCTGTATCTCTATGA AAAACAATGTTATACATAGTGCAATTATTGAATTCTTAATTTCAGGTAGT CGCAATGGTGCTGCTGATACAGCTACGGGCTTCGATGCAAATGCTACACG AACTGTTTTTGTTGGACAATTGGATAAATCGGTGACGCATGGAGAATTGC GAgaaattttcgaacgttttggtGAAGTGGTGGTATGCTTTTCAGCGACT TATATGATCTGAGCTCTTTTCAATATGGGAACAAAAATATAGACAAAATT CGTTTTGAATCTGATTAATGTGCGCCTGTTTATTTACAGTccacgctctc taatttgagcCTCTACTTTTCGtgtctttctgtaattcgaactgaaatat tggtcccctcagctggagaGTGGtgtaaattcaaatttcatagtttgtcc cccctttcttaagaggggatgacaccttccgaaaaatttaagaagggggg gtcaaatttttatgaaaaagggGGGTAGCAAGGAAgggggggggTAGTTT AGAAGGAgcttacatatatattgtagactattttcaagcactgttatgaa attagGTCTTCAATGAAAGGAAATTTTCTGctagagtagtctgagtcaaa aagaacaacgaagtttattatttcgccttctctctctaaagatatttcac catatatttgttagctatttttgtccaaaattctTggggtataggcattt ttcaaggtttgggggccaagaaggggggtcattttagaaggggggATTCC GCACTAtgatatctctaattataatAaaaaaaatttggcaccgtgaaaat cgaattagagagattcaACTGCATCAATTTTTTCCTTGCTATAAAGAGAG AGGAGAAAAATGACAACGgtatcatagtgtcctcccccccttttaaaagg ggggggaattcttttttcagaaaataggaaaagggggggcaaaatagttt tcaaaaatctagggggggtaatcaaaagggaggggagaaaaaatGGCCCC AAAAAGTCTAggggggggAGAAAAAATCTGGagacattatttttttctac tgtggaaaaatatttttctactcTCTGTAGCTAACTTTGTCTAAACTAAC ATCTAAAAAATAGCAgttcatttttaacttttcatttcactctgtggaaa cttttttttcaatttttcattgtataTATAACAGAGATAACGTGAATAGA AGCATCAagagcaaaaattgaaaaaaaaaaattctagggggggggatttt ttttcaaatctcagggggggagagggatttttttccattttctagggggg ggAACCAACCTACTAGGACACTATGGGTATGGTTGTTTTGAATGACTTCT GAAACAAaccctcattttctttttgtaggATGTTGATATTAAGAAGATGC ACACTGGAATCACGACCTATTCGTTCGTCCAATACATCGACATTCAAAGT GCTATTGTTGCAAGACAAAAGATGGACAGACAACTTATTCGAAACAACCG TATCAAGGTATCTTTGGCTGTTTGCCCTATCCTTCCTTTTGGATATAAgc cattttaagaaaaactgtcttctttgttttttaaacGGTTTTTCGAAGCT CCAAGAAAGAGGCGCCTCAATATTTTCCCATTGAATCATTTGCAaagagc gtacgtacttttgtgtactttttaaggaaaaaatactttcaaaacgtGCT CTATTTGAACagtaaaagttttgttttttacatCGACTTTCATTATTTTA GACTCCCAATCGTTGCTGATAACAACGACACATTTTCTATGTTAGTCTCA GAAATAATtcctttaattttatttacgCTAGGCAGAGAAGTGAAGAatga tttttaagaattttttattatatagcaGCTACCATAACCTCCTTTAGTAG GAAAATTGTTAAGGTTGCAGCGAAGTATACGAAGTTGCGATGACTACAAC TTGAAagctaaaaaagttttttttgtcattcaaaTAGGTTGGATTCGGTC GTGGAACACCAACTAATTCGCTATGGATCGGTAACCTAGCTGCCAAAACC ACTGAGAATGATctcatgaaatattttgcatctTTTGGACACGTCCAACA GTGCTTGATAGATCGAAAAGTATGGCAAGCTTTACTACGTTACAGAACGA TCGAATCCTGTACCAAAGCCTTTGCAGAAATGCACGGTAAACACGTCAAT GGAAGCAAGATTGTCGTGagtgatttttttcatctatatctgttttggca aaaagtagtttttcccaattttttaaaatgtGATTTCATTTTGCATAAGA TTTCACTTCCCGTACTAGGATTCCGCTGTCTTTCCTGAGATTcttccgct atttttcccgggataaccggcatgagattggaaagggttttttctaaagt tacggaaaatcttgtgtttacttacGAAACGGCGTGACTttccgaagctc atttttcacAAGATTTTGTCTTCTtgttttgtctatttttattcatGTTC TTGTCTTTAGGTTGATTACGCCAGCCCTGCATGTCGAGAATCTTATTACA ATCGAATGGAGAAACACGGCTACCTTGACCGCCGTCAACTAGAACGTTCA CCCACGCCCCCTGATGTTCACGTTAATTACCCCAACGCCACACGAACGGG CGGTTCTATATCTAATAAAGTGTACCCTAACCGGGTATTTGATGATAAGG ATAGGTTTTCAGATAATCGGTACGACCGGGATCAAATTCGGAACCGAGGA TCGCCGATTCCGAGACGACGCTCACCGAGTCCCCTTGCAGATTCTTATGA TTCTCGGAAACGAAAATTAAGTGCCGATATTATGGCGAATTCTGATGgag agagcgaaaagaagaagaaaaagaagaagaagaaatcaaaagatgaagag gagaaaaggttgaggaaggaacgaaagaaggctgaaaaggcaaagaaaaa agccgagaagaaagagaagaaattgaagaaattacgtgagttggaagaga aaCGTGCTGCCGAAGAAAAAGCCAATACTGCTCCAACATTGTTAAATGAC CGAGCACAAGAAAGCGACCATAAAGAAAATGACTCGGCACATGAAAACGG AGGTATTTCAGACGTTTCTCAAGTGACGGAACCGAACGAAGGTGCAAGTG AGTTAAGCGAAGCTGAGATGACAAACGAAGATAAACCAAAAGAAACGTCG GTTGTTCCCGATGAGAAACCTCCGACGACGACCGAGTCTGTGATCGAGTC CGGTGAAATTAAGGATCCCGAAAAAGAAGAAcgagagaaaaaaatcaccG AGGATTCCTCCGACTCTTCCGATTCAAGTTCGTCTTCTTCCGATTCGGAT AGTGATGATAGTTCTGACGACGATCGCTCTGCAAGAAAGCGAACAAGTAA AACCCGATCATTTGAACCGAAATCTTATCGGCAAGAAATTGACGGAAGAA GCGATTACCGCGAAGGCAGTCGTGAATCATTTCGAGGCTCAAAATACTAC ACAAGCCGGAGTTCGTCACAAAACGACCGCTCACCGAGAACAAAGTCGCG GTCGCGCTCGCCGTATCATCGAGAACCGTCGTACGATCGTAGCCATGACT CACCCCGTTACTCTCGCACTGAATCAGTTCGAAATATCGAAAAACCGAAA AGTTCACCTCCACCCTCAGCCACACCCGGTGAGAGAGCTCCCTCCAGGAA TGCGGATACGTTGATGGATCTTTTACGGCGTTTTCCGGTGATGTGGCAAG GTTTGCTGGGTTTGAAGAATGAGACTGCTGCTGTCCAAATGCATTTCCTC TCAGGTAAATCTTTGTAATTTGTACCACCGTAACTGCTTTgagaaacttt cacaaaatcGGGCTTAAAAGGACAGTTGTTATAGAACTACTTGCACTCGA AGACTAGCTATCATTTTACTATAGATATCATTTCATCTGGTCGCTTTAAG ACCCAAAAACTGATAGGGataatatgaaaatttttgctaaaagaCTTTTG ctataatttatttttaacgTCTGCGTCtgtttctttccatttcttttaCA AGGTAACTTGCAACTTGTTGACCAATCGTTACCGAGATCTGCACAGCCAA ATGAAGTTCCACCACCATTGCGAATTTCACAACGAATGAAATTGGAGCCA TCACAACTGGAAGGTGTAGATAAACGAATACAGGTACAATACAATTAA

Coding sequence (CDS) from alignment at sc0000018_pilon:1658277..1665074+

>XLOC_014548 ID=XLOC_014548|Name=XLOC_014548|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4716bp|location=Sequence derived from alignment at sc0000018_pilon:1658277..1665074+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACTTCAGGCAGCCTCCAATGGGTGGTGGGTATGGTCAAATGCCGTC
TACAGATCATGGTATGCAATACCAACCAAATAACGACAAGTTTCGCATGC
AGAATAATAACTTTCCTCGAAGGGAGCGAGGAAGAAGCCCAGATGAACTT
CAGGCAGCCTCCAATGGGTGGTGGGTATGGTCAAATGCCGTCTACAGATC
ATGGTATGCAATACCAACCAAATAACGACAAGTTTCGCATGCAGAATAAT
AACTTTCCTCGAAGGGAGCGAGGAAGAAGCCCAGGGTCATCTGATGGTAG
ATCCAGTGGTTCAGATATTAGTGAAAAAGATTGGAAATGTACTGTCACTG
TGAAGAACATTCTGACCCGAGAACCAGGGTCATCTGATGGTAGATCCAGT
GGTTCAGATATTAGTGAAAAAGATTGGAAATGTACTGTCACTGTGAAGAA
CATTCTGACCCGAGAACCAGatacTGTTTTGGAGGAATCACTCTATCACG
AGTTCAAGAAATATGGCGAAATTGTCAACATTATCATCAAAGTGAACAGC
AATCAACGATACGCTTATGTACAATATGCACAatacTGTTTTGGAGGAAT
CACTCTATCACGAGTTCAAGAAATATGGCGAAATTGTCAACATTATCATC
AAAGTGAACAGCAATCAACGATACGCTTATGTACAATATGCACAATCAGA
TCAAGCACAAGATGCTACTAGAAGCACTGGGAAATTATTTATGGGACAAG
AATTAAAAGTTGCTGTCAAAGATCAGATCAAGCACAAGATGCTACTAGAA
GCACTGGGAAATTATTTATGGGACAAGAATTAAAAGTTGCTGTCAAAGGT
AGTCGCAATGGTGCTGCTGATACAGCTACGGGCTTCGATGCAAATGCTAC
ACGAACTGTTTTTGTTGGACAATTGGATAAATCGGTGACGCATGGAGAAT
TGCGAgaaattttcgaacgttttggtGAAGTGGTGGTAGTCGCAATGGTG
CTGCTGATACAGCTACGGGCTTCGATGCAAATGCTACACGAACTGTTTTT
GTTGGACAATTGGATAAATCGGTGACGCATGGAGAATTGCGAgaaatttt
cgaacgttttggtGAAGTGGTGgATGTTGATATTAAGAAGATGCACACTG
GAATCACGACCTATTCGTTCGTCCAATACATCGACATTCAAAGTGCTATT
GTTGCAAGACAAAAGATGGACAGACAACTTATTCGAAACAACCGTATCAA
GgATGTTGATATTAAGAAGATGCACACTGGAATCACGACCTATTCGTTCG
TCCAATACATCGACATTCAAAGTGCTATTGTTGCAAGACAAAAGATGGAC
AGACAACTTATTCGAAACAACCGTATCAAGGTTGGATTCGGTCGTGGAAC
ACCAACTAATTCGCTATGGATCGGTAACCTAGCTGCCAAAACCACTGAGA
ATGATctcatgaaatattttgcatctTTTGGACACGTCCAACAGTGCTTG
ATAGATCGAAAAGTATGGCAAGCTTTACTACGTTACAGAACGATCGAATC
CTGTACCAAAGCCTTTGCAGAAATGCACGGTAAACACGTCAATGGAAGCA
AGATTGTCGTTGGATTCGGTCGTGGAACACCAACTAATTCGCTATGGATC
GGTAACCTAGCTGCCAAAACCACTGAGAATGATctcatgaaatattttgc
atctTTTGGACACGTCCAACAGTGCTTGATAGATCGAAAAGTATGGCAAG
CTTTACTACGTTACAGAACGATCGAATCCTGTACCAAAGCCTTTGCAGAA
ATGCACGGTAAACACGTCAATGGAAGCAAGATTGTCGTTGATTACGCCAG
CCCTGCATGTCGAGAATCTTATTACAATCGAATGGAGAAACACGGCTACC
TTGACCGCCGTCAACTAGAACGTTCACCCACGCCCCCTGATGTTCACGTT
AATTACCCCAACGCCACACGAACGGGCGGTTCTATATCTAATAAAGTGTA
CCCTAACCGGGTATTTGATGATAAGGATAGGTTTTCAGATAATCGGTACG
ACCGGGATCAAATTCGGAACCGAGGATCGCCGATTCCGAGACGACGCTCA
CCGAGTCCCCTTGCAGATTCTTATGATTCTCGGAAACGAAAATTAAGTGC
CGATATTATGGCGAATTCTGATGgagagagcgaaaagaagaagaaaaaga
agaagaagaaatcaaaagatgaagaggagaaaaggttgaggaaggaacga
aagaaggctgaaaaggcaaagaaaaaagccgagaagaaagagaagaaatt
gaagaaattacgtgagttggaagagaaaCGTGCTGCCGAAGAAAAAGCCA
ATACTGCTCCAACATTGTTAAATGACCGAGCACAAGAAAGCGACCATAAA
GAAAATGACTCGGCACATGAAAACGGAGGTATTTCAGACGTTTCTCAAGT
GACGGAACCGAACGAAGGTGCAAGTGAGTTAAGCGAAGCTGAGATGACAA
ACGAAGATAAACCAAAAGAAACGTCGGTTGTTCCCGATGAGAAACCTCCG
ACGACGACCGAGTCTGTGATCGAGTCCGGTGAAATTAAGGATCCCGAAAA
AGAAGAAcgagagaaaaaaatcaccGAGGATTCCTCCGACTCTTCCGATT
CAAGTTCGTCTTCTTCCGATTCGGATAGTGATGATAGTTCTGACGACGAT
CGCTCTGCAAGAAAGCGAACAAGTAAAACCCGATCATTTGAACCGAAATC
TTATCGGCAAGAAATTGACGGAAGAAGCGATTACCGCGAAGGCAGTCGTG
AATCATTTCGAGGCTCAAAATACTACACAAGCCGGAGTTCGTCACAAAAC
GACCGCTCACCGAGAACAAAGTCGCGGTCGCGCTCGCCGTATCATCGAGA
ACCGTCGTACGATCGTAGCCATGACTCACCCCGTTACTCTCGCACTGAAT
CAGTTCGAAATATCGAAAAACCGAAAAGTTCACCTCCACCCTCAGCCACA
CCCGGTGAGAGAGCTCCCTCCAGGAATGCGGATACGTTGATGGATCTTTT
ACGGCGTTTTCCGGTGATGTGGCAAGGTTTGCTGGGTTTGAAGAATGAGA
CTGCTGCTGTCCAAATGCATTTCCTCTCAGGTTGATTACGCCAGCCCTGC
ATGTCGAGAATCTTATTACAATCGAATGGAGAAACACGGCTACCTTGACC
GCCGTCAACTAGAACGTTCACCCACGCCCCCTGATGTTCACGTTAATTAC
CCCAACGCCACACGAACGGGCGGTTCTATATCTAATAAAGTGTACCCTAA
CCGGGTATTTGATGATAAGGATAGGTTTTCAGATAATCGGTACGACCGGG
ATCAAATTCGGAACCGAGGATCGCCGATTCCGAGACGACGCTCACCGAGT
CCCCTTGCAGATTCTTATGATTCTCGGAAACGAAAATTAAGTGCCGATAT
TATGGCGAATTCTGATGgagagagcgaaaagaagaagaaaaagaagaaga
agaaatcaaaagatgaagaggagaaaaggttgaggaaggaacgaaagaag
gctgaaaaggcaaagaaaaaagccgagaagaaagagaagaaattgaagaa
attacgtgagttggaagagaaaCGTGCTGCCGAAGAAAAAGCCAATACTG
CTCCAACATTGTTAAATGACCGAGCACAAGAAAGCGACCATAAAGAAAAT
GACTCGGCACATGAAAACGGAGGTATTTCAGACGTTTCTCAAGTGACGGA
ACCGAACGAAGGTGCAAGTGAGTTAAGCGAAGCTGAGATGACAAACGAAG
ATAAACCAAAAGAAACGTCGGTTGTTCCCGATGAGAAACCTCCGACGACG
ACCGAGTCTGTGATCGAGTCCGGTGAAATTAAGGATCCCGAAAAAGAAGA
AcgagagaaaaaaatcaccGAGGATTCCTCCGACTCTTCCGATTCAAGTT
CGTCTTCTTCCGATTCGGATAGTGATGATAGTTCTGACGACGATCGCTCT
GCAAGAAAGCGAACAAGTAAAACCCGATCATTTGAACCGAAATCTTATCG
GCAAGAAATTGACGGAAGAAGCGATTACCGCGAAGGCAGTCGTGAATCAT
TTCGAGGCTCAAAATACTACACAAGCCGGAGTTCGTCACAAAACGACCGC
TCACCGAGAACAAAGTCGCGGTCGCGCTCGCCGTATCATCGAGAACCGTC
GTACGATCGTAGCCATGACTCACCCCGTTACTCTCGCACTGAATCAGTTC
GAAATATCGAAAAACCGAAAAGTTCACCTCCACCCTCAGCCACACCCGGT
GAGAGAGCTCCCTCCAGGAATGCGGATACGTTGATGGATCTTTTACGGCG
TTTTCCGGTGATGTGGCAAGGTTTGCTGGGTTTGAAGAATGAGACTGCTG
CTGTCCAAATGCATTTCCTCTCAGGTAACTTGCAACTTGTTGACCAATCG
TTACCGAGATCTGCACAGCCAAATGAAGTTCCACCACCATTGCGAATTTC
ACAACGAATGAAATTGGAGCCATCACAACTGGAAGGTGTAGATAAACGAA
TACAGGTACAATACAATTAAGTAACTTGCAACTTGTTGACCAATCGTTAC
CGAGATCTGCACAGCCAAATGAAGTTCCACCACCATTGCGAATTTCACAA
CGAATGAAATTGGAGCCATCACAACTGGAAGGTGTAGATAAACGAATACA
GGTACAATACAATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_014548XLOC_014548-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018_pilongenomesc0000018_pilon:1658277..1665074 +
Properties
Property NameValue
Aaloc2215-2358:6655
Aaloc919-2211:5111
Aaloc691-918:4588
Aaloc562-690:3979
Aaloc427-561:2648
Aaloc349-423:2246
Aaloc238-345:1480
Aaloc145-234:829
Aaloc1-141:1