TCONS_00043759 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043759
Unique NameTCONS_00043759
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043759 ID=TCONS_00043759|Name=TCONS_00043759|organism=Clytia hemisphaerica|type=transcript|length=430bp
CTCAATCTCTAATTGCTGTTTCGTATGGAAAACACTTTCTATAGGCACGG
TTGTGTATTGAAAATGAGGCTTTTTTTATTAGGGGCAGTTTAAAACTGGG
GGACTGTAGAAGGCCTTGAATTTTGGCAGATTTCGAGGTTTTTCCAAAAT
CCGTCAAATAAAAATCTCGCCAATATTAATTTTTTCCGTCAtgcgccaaa
ttaaattccccaAAATTTAATACTTTTTGCCAAGATTTGTAAAATAATAG
TATAAGAACTAGAAAGAGAAGACACTTTTCACGACTCCCCAGTTATAGCA
AAGATTTCctaatttgtttgaaaaatgcaGTGGACTTGTTGGGAAAACAT
CAAAAAGCAGACAATTCGACCCGCCGCCGGGGGGACGACGAAGCTTgaca
tattcttataaaaaagcgggTGTATCCCAC
Run BLAST on NCBI

transcript from alignment at sc0004537:4645..5074

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043759 ID=TCONS_00043759|Name=TCONS_00043759|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at sc0004537:4645..5074 (Clytia hemisphaerica)
GTGGGATACAcccgcttttttataagaatatgtcAAGCTTCGTCGTCCCC
CCGGCGGCGGGTCGAATTGTCTGCTTTTTGATGTTTTCCCAACAAGTCCA
CtgcatttttcaaacaaattagGAAATCTTTGCTATAACTGGGGAGTCGT
GAAAAGTGTCTTCTCTTTCTAGTTCTTATACTATTATTTTACAAATCTTG
GCAAAAAGTATTAAATTTtggggaatttaatttggcgcaTGACGGAAAAA
ATTAATATTGGCGAGATTTTTATTTGACGGATTTTGGAAAAACCTCGAAA
TCTGCCAAAATTCAAGGCCTTCTACAGTCCCCCAGTTTTAAACTGCCCCT
AATAAAAAAAGCCTCATTTTCAATACACAACCGTGCCTATAGAAAGTGTT
TTCCATACGAAACAGCAATTAGAGATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027435XLOC_027435Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043759-exon-sc0004537-1491911889:4645..5074TCONS_00043759-exon-sc0004537-1491911889:4645..5074Clytia hemisphaericaexon
TCONS_00043759-exon-sc0004537-1510915933:4645..5074TCONS_00043759-exon-sc0004537-1510915933:4645..5074Clytia hemisphaericaexon
TCONS_00043759-exon-sc0004537-1575043694:4645..5074TCONS_00043759-exon-sc0004537-1575043694:4645..5074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004537supercontigsc0004537:4645..5074 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0136893	0	0.216487	0.246634	0.330478	0	0.135278	0	0.487924	0.106914	0	0.965062	0.0911558	0.195648	0	0.12352	0	0.178573	0.155212	0	0.368127	0	0	0	0.440245	0	0.356358	0.181536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top