TCONS_00043506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043506
Unique NameTCONS_00043506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1069

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043506 ID=TCONS_00043506|Name=TCONS_00043506|organism=Clytia hemisphaerica|type=transcript|length=1069bp
GTGAATTTGGTGTTGATATGAAAATGTTGGTAATTTGTTTATTGTTTATT
GTTGTTTTAGTATCTGGTGTTACATGTTTGTAGTCTATAGCAGCTTTGCA
TCGTTTGAGATTGGTATACCGTCACGTTCCTGTATTTGATGTTGTTTGTT
ACAAACTCGGTCATTTTCCAAACCATCGGTAGACAACTGAATACTGTTAA
GAGTTCATAAAACTGATAGGTAAGCTAAAGGTCTCTTTTTTGATCCATTT
AAAACGTTAACGCTGACACTTCCACGTGCTTTTCTAGGtgtattttacaa
aataatcttttttgCAGTACACAATTAATCGTGAATgatcaaacttttaa
aaaatgtaatgattttctttattatttaacTGTGTATGGGACTTTAATAT
CTTCATTGTTTTGTTGCAGGTATGCTATGCAGAGATCAATCAGTAACCAA
ATATCATGATTCTTTATGAACGACAAAAACATTGCTTTCCTGCTAACACC
ATCCAATATTTTGAATGTGGACACTACAAAAATCGAAACAAGATTCCTAA
TCAAAAGATGCTATTTCATCACCGTTATTTCGTTGATTTTGTCGCCAAAA
CATTATTGTCGTCAGTGTGTTCGAATGTAATGGAAATCAAACCCAATCAA
ACGATGCTTGAAACTTGTATCAAAGTGACCAGAATACGAGGTGTCTGTTG
TTACATTAGCCCGATTTAGGACGATTCCTAGCCTTAGTTATTGCATAATC
ATGTGTTGTTCCCAATCCTGATCATTTGGCGTGAATTCGTTGtcaatgta
attaaaaaagacATTGGTATTCATTAATTGCTTAACGATTGTTCATTCTG
CCTTGATAATACTATGGAGTGTACTAATCTGTAACTTGTATTTTGAAATC
CATTAATGACTTTGAGTAgtattttaactaaaaattTGTATtacattgaa
tttgaaaatattttatatcCTATTAATCGTGAAAACTATGAAATTTAACT
ATAAATAATGCACTTGTTGTTGCCTAAAATATCTCTCTCTCCTATCACCT
TCTCTTTTGTGCTTTTGCC
Run BLAST on NCBI

transcript from alignment at sc0004301:1546..2828+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043506 ID=TCONS_00043506|Name=TCONS_00043506|organism=Clytia hemisphaerica|type=transcript|length=1283bp|location=Sequence derived from alignment at sc0004301:1546..2828+ (Clytia hemisphaerica)
GTGAATTTGGTGTTGATATGAAAATGTTGGTAATTTGTTTATTGTTTATT
GTTGTTTTAGTATCTGGTGTTACATGTTTGTAGTCTATAGCAGCTTTGCA
TCGTTTGAGATTGGTATACCGTCACGTTCCTGTATTTGATGTTGTTTGTT
ACAAACTCGGTCATTTTCCAAACCATCGGTAGACAACTGAATACTGTTAA
GAGTTCATAAAACTGATAGGTAAGCTAAAGGTCTCTTTTTTGATCCATTT
AAAACGTTAACGCTGACACTTCCACGTGCTTTTCTAGGtgtattttacaa
aataatcttttttgCAGTACACAATTAATCGTGAATgatcaaacttttaa
aaaatgtaatgattttctttattatttaacTGTGTATGGGACTTTAATAT
CTTCATTGTTTTGTTGCAGGTATGCTATGCAGAGATCAATCAGTAACCAA
ATATCATGATTCTTTATGAACGACAAAAACATTGCTTTCCTGCTAACACC
ATCCAATATTTTGAATGTGGACACTACAAAAATCGAAACAAGGTACTCCA
AAATGACCTAcattaaaattgataatttgatGAATGAGTATTATAGTCAA
AAAAGGATCTCTTTAACTTTGTGTAGTCTTggagtttctttttttttcca
caCTCAGAAATTGGTCATAACTTTCCACTAAAATTGGAACTCACCTAGGT
TCGATAATAATACTTGTGTTCTTTCAAAATAATCACTCTAATTTTCTTCG
CACTAGATTCCTAATCAAAAGATGCTATTTCATCACCGTTATTTCGTTGA
TTTTGTCGCCAAAACATTATTGTCGTCAGTGTGTTCGAATGTAATGGAAA
TCAAACCCAATCAAACGATGCTTGAAACTTGTATCAAAGTGACCAGAATA
CGAGGTGTCTGTTGTTACATTAGCCCGATTTAGGACGATTCCTAGCCTTA
GTTATTGCATAATCATGTGTTGTTCCCAATCCTGATCATTTGGCGTGAAT
TCGTTGtcaatgtaattaaaaaagacATTGGTATTCATTAATTGCTTAAC
GATTGTTCATTCTGCCTTGATAATACTATGGAGTGTACTAATCTGTAACT
TGTATTTTGAAATCCATTAATGACTTTGAGTAgtattttaactaaaaatt
TGTATtacattgaatttgaaaatattttatatcCTATTAATCGTGAAAAC
TATGAAATTTAACTATAAATAATGCACTTGTTGTTGCCTAAAATATCTCT
CTCTCCTATCACCTTCTCTTTTGTGCTTTTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027196XLOC_027196Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043506-exon-sc0004301-1491911889:1546..2087TCONS_00043506-exon-sc0004301-1491911889:1546..2087Clytia hemisphaericaexon
TCONS_00043506-exon-sc0004301-1510915933:1546..2087TCONS_00043506-exon-sc0004301-1510915933:1546..2087Clytia hemisphaericaexon
TCONS_00043506-exon-sc0004301-1575043694:1546..2087TCONS_00043506-exon-sc0004301-1575043694:1546..2087Clytia hemisphaericaexon
TCONS_00043506-exon-sc0004301-1491911889:2302..2828TCONS_00043506-exon-sc0004301-1491911889:2302..2828Clytia hemisphaericaexon
TCONS_00043506-exon-sc0004301-1510915933:2302..2828TCONS_00043506-exon-sc0004301-1510915933:2302..2828Clytia hemisphaericaexon
TCONS_00043506-exon-sc0004301-1575043694:2302..2828TCONS_00043506-exon-sc0004301-1575043694:2302..2828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004301supercontigsc0004301:1546..2828 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0825064	0.0433161	0.0488754	0	0.112929	0.0439613	0.10693	0	0.0708551	0	0.0839775	0.111255	0	0.0580438	0.0715935	0.10308	0.0325794	0	0.133321	0	0.163499	0.00506266	0.0488772	0.0887468	0.0442917	0	0.176425	0	0.0468848	0.0961424
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top