TCONS_00043171 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043171
Unique NameTCONS_00043171
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043171 ID=TCONS_00043171|Name=TCONS_00043171|organism=Clytia hemisphaerica|type=transcript|length=764bp
GAAAAGATCCAATCGACAAACTTTCTGCTGACGGTAAAAGTATCCACGTT
GGAGGTATTCAATGGTTCTCCAAAGATGACGTTATTTCAATCGATTTCGC
TGAACTCAACTTCGCGAAGAAGGTCAGAGGAAAGAAGCCAACTACTCAAA
AGGAAATCCCAGCTGAAATCACTCGTCGACACTGTGTATCGAAAGCAGCG
GAAATCTTCGACAGCACTGGGAAGTTGACCCATTTACAGCAGCATTGAAG
CTCGACCTCCATGACTTAGTTGAACGTAAGCTAGGTTGGGATGATATCAT
TCCAGATTCATTTCGTCCAATATGGCAATCACACTTCGAGATGATGGAGG
AAATCAAAAATGTAACATTCAACCGATGCATCATTCCTGAGGACGCCGTC
GACGTCAAAATTTCTACCCTCAATTTTGGAGATGCCAGCAAATCGATCGC
AGCTTCAGCCATCTATGGTAGAGTTCTTCGTAAAAACGGGCTCTACTCAT
GTCAATTGATCTTTGCTCGCttgaaaatcatccaaaaccCTTCATCGCAG
CCAAGAGGAGAGCTTTCGGCAGCCGTCCTGAACACTCACACTGGAGAAGT
TGTCAAGCAAGCTCTGCAATCAAAACATGATGGTTGGACAAATCTCACAG
ACAGCCAAATCGTCCTTCACTGGATTCACAACGATGAAATCAAACTGAAA
CCATTCGTCCACAATCGAGTGATTGAAGTCCAACGATTTACAAACCCAAA
CGATTGGTTCTACA
Run BLAST on NCBI

protein sequence of TCONS_00043171-protein

>TCONS_00043171-protein ID=TCONS_00043171-protein|Name=TCONS_00043171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MMEEIKNVTFNRCIIPEDAVDVKISTLNFGDASKSIAASAIYGRVLRKNG
LYSCQLIFARLKIIQNPSSQPRGELSAAVLNTHTGEVVKQALQSKHDGWT
NLTDSQIVLHWIHNDEIKLKPFVHNRVIEVQRFTNPNDWFY
Run BLAST on NCBI

transcript from alignment at sc0003974:2392..3155

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043171 ID=TCONS_00043171|Name=TCONS_00043171|organism=Clytia hemisphaerica|type=transcript|length=764bp|location=Sequence derived from alignment at sc0003974:2392..3155 (Clytia hemisphaerica)
TGTAGAACCAATCGTTTGGGTTTGTAAATCGTTGGACTTCAATCACTCGA
TTGTGGACGAATGGTTTCAGTTTGATTTCATCGTTGTGAATCCAGTGAAG
GACGATTTGGCTGTCTGTGAGATTTGTCCAACCATCATGTTTTGATTGCA
GAGCTTGCTTGACAACTTCTCCAGTGTGAGTGTTCAGGACGGCTGCCGAA
AGCTCTCCTCTTGGCTGCGATGAAGggttttggatgattttcaaGCGAGC
AAAGATCAATTGACATGAGTAGAGCCCGTTTTTACGAAGAACTCTACCAT
AGATGGCTGAAGCTGCGATCGATTTGCTGGCATCTCCAAAATTGAGGGTA
GAAATTTTGACGTCGACGGCGTCCTCAGGAATGATGCATCGGTTGAATGT
TACATTTTTGATTTCCTCCATCATCTCGAAGTGTGATTGCCATATTGGAC
GAAATGAATCTGGAATGATATCATCCCAACCTAGCTTACGTTCAACTAAG
TCATGGAGGTCGAGCTTCAATGCTGCTGTAAATGGGTCAACTTCCCAGTG
CTGTCGAAGATTTCCGCTGCTTTCGATACACAGTGTCGACGAGTGATTTC
AGCTGGGATTTCCTTTTGAGTAGTTGGCTTCTTTCCTCTGACCTTCTTCG
CGAAGTTGAGTTCAGCGAAATCGATTGAAATAACGTCATCTTTGGAGAAC
CATTGAATACCTCCAACGTGGATACTTTTACCGTCAGCAGAAAGTTTGTC
GATTGGATCTTTTC

Coding sequence (CDS) from alignment at sc0003974:2392..3155

>TCONS_00043171 ID=TCONS_00043171|Name=TCONS_00043171|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0003974:2392..3155 (Clytia hemisphaerica)
GTAGAACCAATCGTTTGGGTTTGTAAATCGTTGGACTTCAATCACTCGAT
TGTGGACGAATGGTTTCAGTTTGATTTCATCGTTGTGAATCCAGTGAAGG
ACGATTTGGCTGTCTGTGAGATTTGTCCAACCATCATGTTTTGATTGCAG
AGCTTGCTTGACAACTTCTCCAGTGTGAGTGTTCAGGACGGCTGCCGAAA
GCTCTCCTCTTGGCTGCGATGAAGggttttggatgattttcaaGCGAGCA
AAGATCAATTGACATGAGTAGAGCCCGTTTTTACGAAGAACTCTACCATA
GATGGCTGAAGCTGCGATCGATTTGCTGGCATCTCCAAAATTGAGGGTAG
AAATTTTGACGTCGACGGCGTCCTCAGGAATGATGCATCGGTTGAATGTT
ACATTTTTGATTTCCTCCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026893XLOC_026893Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043171-proteinTCONS_00043171-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043171-exon-sc0003974-1491911889:2392..3155TCONS_00043171-exon-sc0003974-1491911889:2392..3155Clytia hemisphaericaexon
TCONS_00043171-exon-sc0003974-1510915933:2392..3155TCONS_00043171-exon-sc0003974-1510915933:2392..3155Clytia hemisphaericaexon
TCONS_00043171-exon-sc0003974-1575043694:2392..3155TCONS_00043171-exon-sc0003974-1575043694:2392..3155Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003974supercontigsc0003974:2392..3155 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50281	0.467468	0.780673	0.606434	0.240022	0.157332	0.447214	0.819345	0.154888	0.692073	0	0.138543	0.141678	0	0.20386	0.17165	0.0959748	0	0	0	0.185416	0.368768	0.250526	0	0.133963	0.407795	0.0876523	0	0.123741	0.169916
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top