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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043140 ID=TCONS_00043140|Name=TCONS_00043140|organism=Clytia hemisphaerica|type=transcript|length=993bp
ttagtcaaatttttgacactaaaatttgaaaaatcttctggagttgctaa
tcATGCAATCCTGGAATCCAACAGCGAATGTAAAAAGgaggtaaaatttt
ttttattttttcaattcaaagtgaaacactttttctcaaaaatttagagt
cggtcggaggacacgaaccaaactaTCAATTACCTGATCAACAAcgtttc
gcgcgaaagtggatacCAGCCTTAACAACGTGATCAACACATAACCTAAC
TAACCAGCAAGACTTCTGATTTTTGGCTTATTGAAACagtTTACTATAGt
gaaaatagttttgaaaatgtCTTCTGCAAAACTACATAAAGTAATTATAC
GTTATGGACCATATCTGTCATGTGCTGTATCTGAACATAGAGAAGACTAT
TTGCAAGGATTAAAAACAACACTGAGCAAGGCTGGACATACAgtgctttt
agaaaaaattgaagataCAGATGTTGTTGAGATAATGGTATACAATGAGA
TTATTTTTAGATGTAATATTCGTAGTCTGGTCTTTGGTGGCGATGGACAA
CTTGATCCACGATGTACACAAGTACTCAATGCTATCTCAAGTATCCCTTG
TCGATAATATCATACTGAAAATCACCTTTTGAAGATACTTATTTATAAAG
TAGAATGTTAATTTTTGATATTGGACAATTAAGTCATCTAATTTATTGTC
GTGGTGTATATTTTTAACatgtatatattttattttttttcaaattactt
GTAAACTAAACTAATAATTCTTGTATGAAAGAAAGCTTTTAATGTGTAAA
AATTCATTCACAAGTCGAATGCCAGTCTTTCACTATTTTTGATAAACTAC
CCCTATCAACTCTTTAGCAATGCTTAAGGATTTCATTGGGATTTCTTTTT
TTGGGGACATTATTGAAGTATTGAGATGCTAAATGAGATCAAtgcatttc
ttcttttttatttaaaaatatctaccttattggtatatatttt Run BLAST on NCBI transcript from alignment at sc0003952:5809..8063+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043140 ID=TCONS_00043140|Name=TCONS_00043140|organism=Clytia hemisphaerica|type=transcript|length=2255bp|location=Sequence derived from alignment at sc0003952:5809..8063+ (Clytia hemisphaerica)
ttagtcaaatttttgacactaaaatttgaaaaatcttctggagttgctaa
tcATGCAATCCTGGAATCCAACAGCGAATGTAAAAAGgaggtaaaatttt
ttttattttttcaattcaaagtgaaacactttttctcaaaaatttagagt
cggtcggaggacacgaaccaaactaTCAATTACCTGATCAACAAcgtttc
gcgcgaaagtggatacCAGCCTTAACAACGTGATCAACACATAACCTAAC
TAACCAGCAAGACTTCTGATTTTTGGCTTATTGAAACaggttaaattttg
ttttcccTACAGAACTTTTCCTTAGAGGCAATtgagcaagaacaatagaa
ataatCTTTATTTGGCTATTTAGAAAAATGCAAATTAGAAACTTGCTTAA
ATTCACGATAGATTCTTTTccccaaaacgaaacttttctaattttgtaaa
tctttcttccacttccccatacgtaaaatatagagtacaTTTGTTTTCCC
CCAAAACTTGCAAGCGAAAAATGTTAAGACGCATGTTGTCCTCGCGGATT
TTCCtagcgtaatttatttgtgaGATGTcataataattctctttttggaT
TACTGGCGGCATTAATTTCAAGCGCTTActattatttttgaattttttgt
ttttaatgcctattttaaagaaaaatttgttgTTGCGTTCTCCCAAACAA
CTGTTGTTGAAataggaaaaagaaaatagtTAAGTCTAGTCTAGCCTAAC
TGTCAGCTGTCAGGGGGCATTAATTAAAAGAATATGAGAGCTTATttata
tcaaaaacaaaacacactGTTTCTCCCAAGCTGTAAAACCTTTTGGGATA
TTGCATTTATCCAAAAAGGAAAGTGGATTTAAAATTTCAGCGAAAGATTA
GCACTGTAATCTGCTTAATGACTTTTTCTAAAAGGGCTAATTTTACCAGG
AGAAATGTGAGGATTTAGTTTCCAAAGTTGAGCTATCTGAGTAAACGCGA
GAATTTGGAATTTCAAAcatatttgcaaaaaaaatgccaaaccaagttta
atagaccttttgcatCGTTTAGCACTAGATGCGTATACCATTTCATTTCC
AGTTATAGTTAGCAGCATTACGTAATTACTATTAAAAACATTATGTAATG
TCTCCTCACAGTAACTTGATAGTAGTAGATCAATGTTTTAGCCCTTAATT
TTTATCTATTGATTTTGCTATACTATGTCTGCACATCAGGCTAAAAAGTA
CATTCACAATCCCTAAATTTGGATAAAGGaaacacaaaaacttttttcat
tgattaccttattacacgaatattactaggcaagtttTCAAcggccatga
aatttggacgatctgaaattaacacaaatttttttgctttttcaggATAC
CTCGGCTGGTATAAGTTGGTttttttaacacaaaatttttcacttcgtgt
taataaaatgtagtaatattcatgtaataagAGGTATTATAATGATTCTC
CTGGAATCAATAGGATAGGGTatataattgaaattttcattttcttttaa
gtTTACTATAGtgaaaatagttttgaaaatgtCTTCTGCAAAACTACATA
AAGTAATTATACGTTATGGACCATATCTGTCATGTGCTGTATCTGAACAT
AGAGAAGACTATTTGCAAGGATTAAAAACAACACTGAGCAAGGCTGGACA
TACAgtgcttttagaaaaaattgaagataCAGATGTTGTTGAGATAATGG
TATACAATGAGATTATTTTTAGATGTAATATTCGTAGTCTGGTCTTTGGT
GGCGATGGACAACTTGATCCACGATGTACACAAGTACTCAATGCTATCTC
AAGTATCCCTTGTCGATAATATCATACTGAAAATCACCTTTTGAAGATAC
TTATTTATAAAGTAGAATGTTAATTTTTGATATTGGACAATTAAGTCATC
TAATTTATTGTCGTGGTGTATATTTTTAACatgtatatattttatttttt
ttcaaattacttGTAAACTAAACTAATAATTCTTGTATGAAAGAAAGCTT
TTAATGTGTAAAAATTCATTCACAAGTCGAATGCCAGTCTTTCACTATTT
TTGATAAACTACCCCTATCAACTCTTTAGCAATGCTTAAGGATTTCATTG
GGATTTCTTTTTTTGGGGACATTATTGAAGTATTGAGATGCTAAATGAGA
TCAAtgcatttcttcttttttatttaaaaatatctaccttattggtatat
atttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043140-exon-sc0003952-1491911889:5809..6097 | TCONS_00043140-exon-sc0003952-1491911889:5809..6097 | Clytia hemisphaerica | exon |
| TCONS_00043140-exon-sc0003952-1510915933:5809..6097 | TCONS_00043140-exon-sc0003952-1510915933:5809..6097 | Clytia hemisphaerica | exon |
| TCONS_00043140-exon-sc0003952-1575043694:5809..6097 | TCONS_00043140-exon-sc0003952-1575043694:5809..6097 | Clytia hemisphaerica | exon |
| TCONS_00043140-exon-sc0003952-1491911889:7360..8063 | TCONS_00043140-exon-sc0003952-1491911889:7360..8063 | Clytia hemisphaerica | exon |
| TCONS_00043140-exon-sc0003952-1510915933:7360..8063 | TCONS_00043140-exon-sc0003952-1510915933:7360..8063 | Clytia hemisphaerica | exon |
| TCONS_00043140-exon-sc0003952-1575043694:7360..8063 | TCONS_00043140-exon-sc0003952-1575043694:7360..8063 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003952 | supercontig | sc0003952:5809..8063 + |
Blast
BLAST of TCONS_00043140 vs. Swiss-Prot (Human)
Match: CJ053 (UPF0728 protein C10orf53 OS=Homo sapiens GN=C10orf53 PE=3 SV=3) HSP 1 Score: 93.9745 bits (232), Expect = 1.417e-23 Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 2
Query: 341 VIIRYGPYLSCAVS-EHREDYLQGLKTTLSKAGHTVLLEKIEDTDVVEIMVYNEIIFRCNIRSLVFGGDGQLDPRCTQ----VLNA 583
VI+RYGPY + + EH LQGL+ L+ GH V+LEKIED +VVE+MV E+IF CNI+ L FGGDG+LDP C + VLNA
Sbjct: 7 VILRYGPYSAAGLPVEHHTFRLQGLQAVLAIDGHEVILEKIEDWNVVELMVNEEVIFHCNIKDLEFGGDGKLDPLCEKARIAVLNA 92
The following BLAST results are available for this feature:
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