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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96287_cuf6 >transcript:BL96287_cuf6-protein ID=transcript:BL96287_cuf6-protein|Name=transcript:BL96287_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=156bp
TGNHNQSVVLWSEVAQNIARTTMEETGRLTSPTRVFVTGTSGRVGGLAVD
WLSGNIYWSDASYNSLLVATSDGNRRRVLVQTGAYSSPSGLALHPEKGLM
FWASQGYPGIGGKIERATMTGQGRTALAHRRLVDPRGLAVDYVDNRLYWA
DVITGN Run BLAST on NCBI mRNA from alignment at Sc0000036:1029619..1035625- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96287_cuf6 ID=transcript:BL96287_cuf6|Name=transcript:BL96287_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=6007bp|location=Sequence derived from alignment at Sc0000036:1029619..1035625- (Branchiostoma lanceolatum)
TGACAGGGAACCACAACCAGAGTGTGGTACTGTGGAGCGAAGTGGCCCAG
AATATCGCCAGGACGACCATGGAGGAGGTATGTAGAAAACTCCAACACAA
AAACATTTATTTAGATTTATTCAGATCCACAATTACCTTAACAATATATA
GAAGTTTACTGCAAGTTCATGCCCGTGGGCTAATTGCAAATACATTGTAA
AAACAGGGAGAAAACATACATGCGTCAGTAAACTTTGCTGTAACAATAGG
CTACTGGTACTAAATACAATTGTTGACTATATCTAAACTAGCTGGGTTTG
ACTTCTTTTTCGGAAGCAGTGGAAGACGAAAAGTCCCACTTTTTCTAGTA
TTTGTGGGTTCTGTGATTTCAAGAGAAAGGTAGCTTTTTGTTCATCCGTG
AGTGTGTAAAAGTAGGGGCACTTCGTGGTAACTTGTTTAAATAATTCGGT
TCTTTCGTCACTGTTAAATAGACACTTGGAAATAAAATGTGTTTCGTCTT
CCACCGCCTTGGACGTACAGTATTTACAAATTCTTTGGCACACTGGTAAA
CTCTTATATCGTCCTCTCTCTACTTCTAGGGAGTGAGCACTAATTCTTAA
TTTGCTGATGGCCGAGCGCGACTCAAAATCAGCAAGTTCTAGGTACCTCT
CTCAGTGTATACAGATTTACAATACACAGATACATTGCAGCTACTCTTCC
TGTGGTCCATATGGAGTCAAACACTGTAACGAACAAGTCCATCCCAGTAA
AGCTTCTCATTTTCTCTTCGTCTTCCACTGCTTCCGAAAAAGAAGTCAAA
CCCAGCTAGTTTAGATATAGCCAACCAGTTGCCTATTGTTACAACACAGT
TTACTGACGCATGTATGTTTTTCCCTATGTTTTTCCATGTATTTGCAATT
AGCCCACGGGCATGAACTTGCAATAAACTTCTCATTCTGTCAATGTTTTT
TACTGTCATGTTTGATTTTCTATGCTTAAACGATGCACTTAGATAATCCT
ATCTAAGATGCTAAAAGAAAACACACAAGTACTGTTCAGCTATCCTGTTG
ATGTTCACGTAACATTGACTTCATTCCGCTAGCTTTTAAACTATTGATAA
CCGTGACAAAAGTTCACAAAAACTTATTATGCATGTTTATTTACGTTGGC
ACAGATCAATGACTTCAGCAGGAACAGAATGGCAAATTGATATTCTAACA
TGGAGCGTATCACTCCTTCGTTGCTAAGGACGAATTTTTTCAGCGCGGAA
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAATAATTCGGTTCT
TTCGTCACTGTTAAATAGACACTTGGAAATAAAATGTGTTTCGTCTTCCA
CCGCCTTGGACGTACAGTATTTACAAATTCTTTGGCACACTGGTAAACTC
TTATATCGTCCTCTCTCTACTTCTAGGGAGTGAGCACTAATTCTTAATTT
GCTGATGGCCGAGCGCGACTCAAAATCAGCAAGTTCTAGGTACCTCTCTC
AGTGTATACAGATTTACAATACACAGATACATTGCAGCTACTCTTCCTGT
GGTCCATATGGAGTCAAACACTGTAACGAACAAGTCCATCCCAGTAAAGC
TTCTCATTTTCTCTTCGTCTTCCACTGCTTCCGAAAAAGAAGTCAAACCC
AGCTAGTTTAGATATAGCCAACCAGTTGCCTATTGTTACAACACAGTTTA
CTGACGCATGTATGTTTTTCCCTATGTTTTTCCATGTATTTGCAATTAGC
CCACGGGCATGAACTTGCAATAAACTTCTCATTCTGTCAATGTTTTTTAC
TGTCATGTTTGATTTTCTATGCTTAAACGATGCACTTAGATAATCCTATC
TAAGATGCTAAAAGAAAACACACAAGTACTGTTCAGCTATCCTGTTGATG
TTCACGTAACATTGACTTCATTCCGCTAGCTTTTAAACTATTGATAACCG
TGACAAAAGTTCACAAAAACTTATTATGCATGTTTATTTACGTTGGCACA
GATCAATGACTTCAGCAGGAACAGAATGGCAAATTGATATTCTAACATGG
AGCGTATCACTCCTTCGTTGCTAAGGACGAATTTTTTCAGCGCGGAAGGA
AAAAGACATACATGTATGCGTAGAACTCTCTAAGTGGCGTGGCGGCTAAA
AGAAAAGCTAATATTATTACAATGCCAAAGTTTCTTCCAACGCAAGTGAT
TGGTCATTATTGATCCTGAAGAAGAAGACGACAGTGGTCGTCGAAAATTT
GATCCGTATACCTTTCTGTTGGAAGAAAGTATAGCATTGTAATTTGATAA
CTATAATTATGATAACCTTTATTGTATATTCATGCCCTATCGCGGGCTAA
GTACAGGCATTTAGATACAAAATACATGGTTTATTTATCAATTTACCGTA
ACGTTCATATAAGGACACACAGGATTTCTAATACTAATCTAAAACAACGG
TTCTAAATTAAAACTACTCTAATTCATAGGTTCGGCCTCTTCTCGTCTCT
TTGTGATGTTAGAAATATAAGTTGAGATGGACTTGTTTAATATTGTATGG
TCAAAACGCATATTAAAAATGAATTTCTCAATATTAGACATAAATTGGAA
GTGTGGAAACGTTGCCATAATATCAAACAAAACCTTTCTATCGTTGCTAT
ATAAAATACAATCTACAATAAAGTGGACTTCATCTTCTACCTTATTTAAG
TTACTACCAACACAGATGAGCTTCCATCATAAAAGCTAATACGTCTAACC
TGTTCTCCAGACCGGTCGTCTAACGTCCCCTACTCGGGTGTTCGTGACCG
GGACGTCCGGCCGTGTTGGTGGGCTGGCGGTGGACTGGCTCTCCGGGAAC
ATCTACTGGTCGGACGCCTCCTACAACAGCCTCCTGGTCGCCACGTCTGA
CGGGAACAGGCGGAGGGTGCTGGTACAAACAGGCGCATACAGCTCTCCGT
CTGGACTCGCCTTACATCCAGAGAAAGGGTAGGAAACTACTTTGTGTCTT
TTTACTAGCCTCTACCAGGCTCCGTCCTATCGTTGGGAAAATAGTAGAAA
TCAGCCGCGGTACTTCGCTATACAGGGTAGGTCCGCTATACAGTAAGGTT
CCATTTCGATGGACGTGGATGGCAGATTGGACCCTCTCTCCGTAGCTAAC
TCCCTTGGAACACTATTCACTTTATTAGGCCAATTTCTACTATTTTTCCA
GCCATCCCGCGGAGCCTGGTAGAGGCTATCTTTTTACCGGTATTGCTAAG
TATAAGACCAGTGTTTGCCACTTCTAGGCACTGAACTAAGGGCCCTGTCA
CACTTGTTCGTGTATTCAAGTGCGCGTGAGTTGCGCTTTAACATTTTGTT
GGCTTAAGTAAGGTTTGCGGGGGGGGGGGTTGTTTTCTACTTTGACCCAC
CGTTGGGCGGCCTAGTGATCGAACCTAAGAAATCACTTACTCGGCTGCAA
ACTTAACCTCAACCCAAAACCGCAACTCATGCGGACGTGTATATATACGC
ACAGGTGTGACAGGGGCTTAAGTTGAAGAGTTATGGAGATAGCGGTGTAC
ATTGCTTTTGAGGGCTTGTGGGTTGTATTTGTGTAGGATGAACCCCCAGA
AAGAGAATTCAATATTTTAGCAGTCTGGAGTAAGGGGCTGTTGCTGTAGA
AAGACTTTAAGACTGGTATCTGAACAAGGTGTTACGCTGAAATTCTCTCA
CTGGTGAGACAAGCAATCATTTGTGTCTTGAGAGGAGGGGAGGGGAAGAA
AAGCGCCATTAAAAGTAATTGATCTGTCTGGCGTGTTTCTGATCGTTAAA
GTGTATTTGCGTGAAGAAATTTATTGAAAAACTGATGATCCATAAGCGAT
ATCTTCAACAGGTAAAAAAAAAGAAGAGGTATGTAGGGAGACGGAAGCAT
AGATATAGGAATCGGCTATACCTATGTAAAACGTAACGTTACAGAAAGAT
AAGAAGCGCATATGAATAGAATGGGCGAAAATCAAACTTAAAAACCAAAC
TTAATCTGTTCCCAACTATCATAGTTAGGAAGCGTTTAAGTTTGATTTTT
AAGGCTAAGCCTTCCATCTTATTCTGAATGGCACTGAATAAGATATATAA
CCTTTTTAGAACCACAAGAAATACTGGTGTGTTGACAACACTTGCTTAAT
GAAGTAGTAAGTACCAATTGGTGGATGAGGAATGTTTTCATCTAATGTTA
TACATTGACACTTGTTTCTAGACTGATGTTCTGGGCTTCTCAAGGCTACC
CGGGTATCGGCGGGAAAATCGAGCGGGCCACGATGACAGGACAGGGTCGG
ACAGCGCTGGCACACCGGCGGCTGGTGGACCCACGGGGACTGGCAGTGGA
CTACGTAGACAACAGGTCAGTCAATTAAGCCCCCCTCTCACTGGACCCGC
GGCACGCTGGCGGCGTCGCTAGGTCCTAGACTGGATTTGTATTACCCTTG
ACTTTATTATGGGAATATCGTTCAATACGTACAAGTATGACCAAAAAGAC
AACAAAACACATTATTGCTTTTAAGGAATTATGTTATTTTTGTCCTCTGC
TGTCATGTTGTATGTCTTTGTATTTCCCCGATTGTAATGTGTAAATATGA
ATATGTAGACCACAGGAAGAATAGCCTTTTATGAGGCTAATTGTGGATCT
AAATAAAACTTATAAACTCATAAACAAAGCTGAAAAAGATTCGTTTTTCG
TCGATGAAACTCGTTGAGTGCTTTGTCAATTCGATCGGCCGAAGCGACGT
CGCCAGCGTGCCGCGGGTCCAGTGAGAGGGAGACTTTACTAATACACGGG
AATGTCCCTGTAGCTTAATCGTTAGTGGCTTCTCAGTTCAGCCTCCTGGT
TCCAATTAGTTGGTAACTGGGAGACAATGATTCGAATCCGGAAAAGGCTA
ACCCTAAGCTTGCACCTTCTTTCGGAAGAGACGTACGCGTAAAATTGGTT
CTCCTATTCGAAGAGGTACCTCAAATAGGTTACCACAGCCTCTTTACTCA
TTACGCAGATGGATACCTACTGGCTGTAGTAATACAACACGGTGAATACG
AGGCACAATTCAAGAGGACAAAGTTGAAGATGTCTTACAATGTACCGATA
CATCATTTCTTCTGAGATTGTTGATAAGTAGCTGAAATTAGTCCCTTTGG
TGCACTGTACAAGATAATTTATTTGAAATCGCAGGGTTGCCACTGAATTA
AAACAAATGTACAATTATTAAAAATACTTAGGATAGACGGCGTCATATCG
TCTAATATCATATACGTATGACCTTAAAGGACCTTAAAACACTAAAAATA
GTAGGACAGATAAGTGTTTAAATCGGCGTATCATATAACCTTTACTACAC
TGATTTAGGCAACAGGGAGAAGGTTAGTAATAAGTAAATTTACAAAAAGA
AATACTGGTTAAGTTGGTCAATGTAGGTCCGTCGGGGTCGCCCGACACTG
GAGTGTCCATGAGTTGGTGAACTAGTACTCTGGACACCAACTCATGGACA
CTCCAGTGTCGGGCGACCCCGACGGACCTACATTGACCAACTTGCTGGGG
ATGTAGGGGTGAGGGCTGAAGATCTAGAGCACTTAATAGCGGACCGTAGC
GACTGGAGGAAGAGGGTTGACTCAATTAGTCCGGGCAACCCGCCCGACAT
GATGATGATGGTTAATTTGAGTGTCTTCTTCTTCTTTTAACAGTAATGTT
ACATGTACACAAACATTACATCATCGAAAGAGAACAGGAATAGACCATTG
GAATAATAAATCATGTTATTGCAGACTGTACTGGGCAGACGTCATTACTG
GGAACAT Coding sequence (CDS) from alignment at Sc0000036:1029619..1035625- >transcript:BL96287_cuf6 ID=transcript:BL96287_cuf6|Name=transcript:BL96287_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=1872bp|location=Sequence derived from alignment at Sc0000036:1029619..1035625- (Branchiostoma lanceolatum)
ACAGGGAACCACAACCAGAGTGTGGTACTGTGGAGCGAAGTGGCCCAGAA
TATCGCCAGGACGACCATGGAGGAGACCGGTCGTCTAACGTCCCCTACTC
GGGTGTTCGTGACCGGGACGTCCGGCCGTGTTGGTGGGCTGGCGGTGGAC
TGGCTCTCCGGGAACATCTACTGGTCGGACGCCTCCTACAACAGCCTCCT
GGTCGCCACGTCTGACGGGAACAGGCGGAGGGTGCTGGTACAAACAGGCG
CATACAGCTCTCCGTCTGGACTCGCCTTACATCCAGAGAAAGGACTGATG
TTCTGGGCTTCTCAAGGCTACCCGGGTATCGGCGGGAAAATCGAGCGGGC
CACGATGACAGGACAGGGTCGGACAGCGCTGGCACACCGGCGGCTGGTGG
ACCCACGGGGACTGGCAGTGGACTACGTAGACAACAGACTGTACTGGGCA
GACGTCATTACTGGGAACACAGGGAACCACAACCAGAGTGTGGTACTGTG
GAGCGAAGTGGCCCAGAATATCGCCAGGACGACCATGGAGGAGACCGGTC
GTCTAACGTCCCCTACTCGGGTGTTCGTGACCGGGACGTCCGGCCGTGTT
GGTGGGCTGGCGGTGGACTGGCTCTCCGGGAACATCTACTGGTCGGACGC
CTCCTACAACAGCCTCCTGGTCGCCACGTCTGACGGGAACAGGCGGAGGG
TGCTGGTACAAACAGGCGCATACAGCTCTCCGTCTGGACTCGCCTTACAT
CCAGAGAAAGGACTGATGTTCTGGGCTTCTCAAGGCTACCCGGGTATCGG
CGGGAAAATCGAGCGGGCCACGATGACAGGACAGGGTCGGACAGCGCTGG
CACACCGGCGGCTGGTGGACCCACGGGGACTGGCAGTGGACTACGTAGAC
AACAGACTGTACTGGGCAGACGTCATTACTGGGAACACAGGGAACCACAA
CCAGAGTGTGGTACTGTGGAGCGAAGTGGCCCAGAATATCGCCAGGACGA
CCATGGAGGAGACCGGTCGTCTAACGTCCCCTACTCGGGTGTTCGTGACC
GGGACGTCCGGCCGTGTTGGTGGGCTGGCGGTGGACTGGCTCTCCGGGAA
CATCTACTGGTCGGACGCCTCCTACAACAGCCTCCTGGTCGCCACGTCTG
ACGGGAACAGGCGGAGGGTGCTGGTACAAACAGGCGCATACAGCTCTCCG
TCTGGACTCGCCTTACATCCAGAGAAAGGACTGATGTTCTGGGCTTCTCA
AGGCTACCCGGGTATCGGCGGGAAAATCGAGCGGGCCACGATGACAGGAC
AGGGTCGGACAGCGCTGGCACACCGGCGGCTGGTGGACCCACGGGGACTG
GCAGTGGACTACGTAGACAACAGACTGTACTGGGCAGACGTCATTACTGG
GAACACAGGGAACCACAACCAGAGTGTGGTACTGTGGAGCGAAGTGGCCC
AGAATATCGCCAGGACGACCATGGAGGAGACCGGTCGTCTAACGTCCCCT
ACTCGGGTGTTCGTGACCGGGACGTCCGGCCGTGTTGGTGGGCTGGCGGT
GGACTGGCTCTCCGGGAACATCTACTGGTCGGACGCCTCCTACAACAGCC
TCCTGGTCGCCACGTCTGACGGGAACAGGCGGAGGGTGCTGGTACAAACA
GGCGCATACAGCTCTCCGTCTGGACTCGCCTTACATCCAGAGAAAGGACT
GATGTTCTGGGCTTCTCAAGGCTACCCGGGTATCGGCGGGAAAATCGAGC
GGGCCACGATGACAGGACAGGGTCGGACAGCGCTGGCACACCGGCGGCTG
GTGGACCCACGGGGACTGGCAGTGGACTACGTAGACAACAGACTGTACTG
GGCAGACGTCATTACTGGGAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000036 | genome | Sc0000036:1029619..1035625 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96287_cuf6 |
| Biotype | protein_coding |
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