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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96189_cuf0 >transcript:BL96189_cuf0-protein ID=transcript:BL96189_cuf0-protein|Name=transcript:BL96189_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=137bp
LVPTAPEGDRHLLVHIKRPSVDRAEIVKGLYLQLAPPFTMETTKVNVWLL
VLSLTILKGTNIVSGYPSITFTCVRNCGSLVDEAAVFGIQAICNDCRDPN
RELTFVWHMYETDLRTDTSREISDLSSMQVSGLDPHS Run BLAST on NCBI mRNA from alignment at Sc0000086:1150864..1154973+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96189_cuf0 ID=transcript:BL96189_cuf0|Name=transcript:BL96189_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4110bp|location=Sequence derived from alignment at Sc0000086:1150864..1154973+ (Branchiostoma lanceolatum)
GTTGGTGCCGACAGCACCGGAGGGAGATCGACACTTGCTCGTACATATCA
AACGTCCAAGTGTCGATCGAGCTGAAATTGTGAAAGGTAGGTGCGATCTC
CTTCGGATAACTATTCCCTATCTAACACCGTAGCTGTGATATCTCCAAAT
ACCTTTTGTGAGATACATGTAGCTGCTTCTGTTTATGATGTTAGTTTGTT
ATTAGATTTATCTTTTATTCAAGATCAGTCCATGTACATTCACTTGTCTT
TTATCAATTTTTTTTCAATTCAAATATGTTTCTGATATTGAACTTTTCAA
TTCAAATGTGTTTTATAAATTTCTATCTGAAGCCGCGATATATACTGCTA
TTTTGGTGTGCTTTCTCGTTATGCTGTATTTTTGTCTCTAAAAATGCAAT
GTAGAAGATAGAGAAATAGCTTCTCCGTTTTTGTTGTCTCGTAATACTAT
GATATTTCTCTTCGTGTGGCAGATTTTGCTGTATATTCTCCTAGAAACAA
AAAAACTCTTCCTTCGTGCTATTTTCGCTGGATGTTTGTCTCATGATCAT
GCGAAGAAGGGGTTCTTTTCGTTTATCTTACAGTAAGGCATGGTTGAAAT
TTCCTTTTTTAGCGAAGCCTGAGGGGCAAGCTTAATAGTATATTTTAGGC
CCGATTTGCAAGAATTCCCAAAATTCCACAGGAATTTCAGGAATCCGTCC
GGCCAACTTTGTGGATGCCTTCCTGTCACTTTTTCAAACTTGATACCTCA
TTAGCACGTCTGGCATCCAGGCACTCAGCTGTCGATGACATATGACCTAC
TTTTACGTGGTGTCCGATTTCGTACTGCCCGGAGTGTGTCAGGGAGTTCA
CCGAATCTAGTATTCTAGCTTTGAAAAGGGTTTGCGCATCCCAGTTGATC
TATTATCACAAGAACGTGCTGAACATCATGCCTCCCACCAAAAAACCTCT
GTGAAACCCAAAACTTGAGGAGATCCAAGCATATAAAGAAAGGCAAAGTT
TTAAACGGAACGATAAATAACTTGGGTTACCACTTGGGCAGTCTACACTG
AACGCCTTACGGGGAGGCGTGCGGTGTCGGAAAAACAACAGTAGCTCCTC
GAAAACACATCCTACAGAGCTAGAATAACAACCAAAACGATCATAGGAGC
CNTGAATAACAACCAAAACCATCATAGGAGCCCCAGCATATACCAATTTT
CTAAACTTCCGGCCTAGTTTCTCACCCCACCTATCCAACAATGCCAGAGA
AAAAAGACACTACAACGGGAGTGTACTCGGGCCTTTCTACATATGCTAGG
AACTCCTCGAGTTACATGGTGCCTTTTCATATCTGCTTGGCAGATGCCTT
TCTGATTTCTAAGTGCGTTTTGCACAATATCATGGCAGAACTAAGATCTA
GAGTGCTACGTTGGTACTTTCCTTACAGTGAAGTAAGATCAATCCAGACA
CCTTCGCTATGGCAATAATTTTTAATTGCCACACTTATTTGGAGTTGAAG
TTTGTTGTTGAAGTTGACTTTGTAGCGTCGAGTATTTCTCTCTCATAAGG
AGAACAATGAAATGGAACAGCTAAGCTATGTTTTCAAAATCTCCGTTCAA
TTAGACAATGGCTACGAATAAGCAGACTTGATTGCCAACTTAAATCTCCT
GGGTTTTGTTTTACCCCAAGGTCTGTACTTACAGCTCGCCCCTCCTTTTA
CCATGGAAACCACGAAGGCAAGTAACCTGTGCTATTATAGTCTAGTGCAT
TCGTCATGACACAATGACTTAGTCATATGAATGACATCCACGCGAGTATC
ACTTTTCGACCGTTTCCCTCAGAAAGATTTCCAACCATACTGTATACCGT
GAAGAGAAGCTGCAAAATGAGCAAAGATATGCCGTAAATTGCAAAATGAA
AATGGGCCATGATTATGACTTATGTCTTAGGTGGCCTTTTTCTTATCGTA
ATCTTTTTTTGCGATGTGTATCGGAACTACTTGTTTGAAAAATGAAATAC
GAGGCCTGAGCGAAGTCTTTCAAAGTGGCAGATGTGAAAGAACAAAAATA
TAGACTTTATTCTTTGGCATACTAAAATTAATAGTAAACTTTCCAAGCTC
TGAAGATGTGTAATTTACACTGTAAGGTTGAAACCATACCAACAAACAAG
GACTCTTTTCTGTGTATATTTGTCTATTCAACAAAAGGCATTCTTCGATC
TAAAGATGTGTAGATTTGTTTGGCAATCACAAGCACCTATTTACTGCTTA
CGTGCCCTTTCCATCATTTTCAGGTTAACGTCTGGCTCCTTGTCTTATCA
TTGACAATCTTAAAAGGTAGGACTGGTAATGCGTGATGTTTCTTGTGTAA
GATGCTAAACGTTTGGAACACTTTCTTTAGATTGCGTCCTTTACATTGAA
CTCAAAATTCTATTACTTGTTATTAATCAGCTGCTTAACCATATACATGT
TATTCCAAAGGGACAAACATCGTCTCAGGCTACCCAAGCATCACATTTAC
GTGAGTTATGATTCCGTGTCTCTTTAATATCTTAGAATAGTTATGTATTT
CAGAAGTGTAGAAGTTTATATGTAGTCCATAATTTACAGTATTTTCAAAT
GCGTCACAGTTTTCACAGCTGCAGTAAAATGCATAATGATGATGATAGTA
ATGAATATTCAAATATTGCTGTTGTCTGTACGGTATGCATGCCGCAAATG
AAACATTGCTTGGGGTACAGTTTTGGGTGATAAATGTATTAACAATTATC
TTTATAACGACAAATGGTATCTGGTTTTCCTCGTGATCAGTTTGTTTGAC
TTCATTCTTTAGAAAATAAACGATTTAATCAGGCTAATAGTATTCTTGTT
GCCACCTCTGCATAACGACTACCTGGATATCGTGGCCACTTTTTGGTGGT
CCCCTATATCATTTATTTTTACCTGAGCATTATGAATCCTATTTATAGCG
ACCACCTATCTACTATTACAATTTTTCAAGTCCTTTCTATGATCACATAT
CTAAACACTAAAATAAAACAGGTCTCACTGCATACTGGGTGAAACAATAT
ACGGATATCATCCATACAAACACGTCCTTAACGTTCCAGTAACGTACTTA
ATCTTCACATCCCCTAGGTGTGTCCGTAACTGCGGCTCCCTGGTGGATGA
AGCGGCAGTGTTCGGGATCCAGGCTATATGTAACGACTGTCGGGATCCCA
ACAGAGAGCTGACGTTCGTCTGGCACATGTACGAGACAGACTTGAGAACT
GACACAAGCCGGGAGATCTCCGATCTGTCCTCCATGCAAGTCTCAGGTAC
GGTATTTCTCCTGTGGCGTTGTAATTGCAGGGGTGCCAAAGGATTCATAC
GAATTTTGCGGAATTCATACGAGTTTTATGGAATACATACGATCCATTAC
GAGAAACATGCGAATTTTACGGAATACATACGATCCATTACGCAGAAACA
TACGAGTTTTACGGAATACATACGATCCATTACGCGGAATACATACGATC
CTTACTAATTTGTTGGGTACGCCAAATTCAAGATGGCGGACTCGGGATAA
CCAGTTCTTCGTACGATATCTTGGCTTTTAAGAGCTTAATAATGGCGTAT
CCCACCCAGCTAAAAATAAACTTTAAAAATCTCAAGCTGCACTAGTGCTA
GATTAAGACTGATATAGGCTTATACCAACTAGGAGGACCAGACAAAGCTA
GATTTGGTGCTAGCGCGATGGTCAACAAATTAGTAAGGATCGTATGTATT
TTGCGTAATGGATCGTATGTATTCCGTAAAACTCGTATGTTTCTGCGTAA
TGGATGGTATGTATTCCGTAAAATTCGTATAAATTCCGTAAAATTCGTAT
GAATTCTTTGGCACCCCTGTTGACAACAACTGCATTCGTATTTCTTTACT
ATTAAGTCTCCTGTTTCATTTTTGCTCTCGACTGTCTGTTGTGTCAAGTT
TATAGTGTTTTCTTATAATAGTATTTTTCAACGTCATGTTTAGGGGTGGT
GCCCACATATTGTTTATGATACTGTCTTTGTAAGTAGCAACAGAAGACCA
CTCATGCGCCATGAAGGCCTCTGATGTTGTTTCAATGTTCAGGTTTAGAT
CCTCACAGCC Coding sequence (CDS) from alignment at Sc0000086:1150864..1154973+ >transcript:BL96189_cuf0 ID=transcript:BL96189_cuf0|Name=transcript:BL96189_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2466bp|location=Sequence derived from alignment at Sc0000086:1150864..1154973+ (Branchiostoma lanceolatum)
TTGGTGCCGACAGCACCGGAGGGAGATCGACACTTGCTCGTACATATCAA
ACGTCCAAGTGTCGATCGAGCTGAAATTGTGAAAGGTCTGTACTTACAGC
TCGCCCCTCCTTTTACCATGGAAACCACGAAGGTTAACGTCTGGCTCCTT
GTCTTATCATTGACAATCTTAAAAGGGACAAACATCGTCTCAGGCTACCC
AAGCATCACATTTACGTGTGTCCGTAACTGCGGCTCCCTGGTGGATGAAG
CGGCAGTGTTCGGGATCCAGGCTATATGTAACGACTGTCGGGATCCCAAC
AGAGAGCTGACGTTCGTCTGGCACATGTACGAGACAGACTTGAGAACTGA
CACAAGCCGGGAGATCTCCGATCTGTCCTCCATGCAAGTCTCAGGTTTAG
ATCCTCACAGCTTGGTGCCGACAGCACCGGAGGGAGATCGACACTTGCTC
GTACATATCAAACGTCCAAGTGTCGATCGAGCTGAAATTGTGAAAGGTCT
GTACTTACAGCTCGCCCCTCCTTTTACCATGGAAACCACGAAGGTTAACG
TCTGGCTCCTTGTCTTATCATTGACAATCTTAAAAGGGACAAACATCGTC
TCAGGCTACCCAAGCATCACATTTACGTGTGTCCGTAACTGCGGCTCCCT
GGTGGATGAAGCGGCAGTGTTCGGGATCCAGGCTATATGTAACGACTGTC
GGGATCCCAACAGAGAGCTGACGTTCGTCTGGCACATGTACGAGACAGAC
TTGAGAACTGACACAAGCCGGGAGATCTCCGATCTGTCCTCCATGCAAGT
CTCAGGTTTAGATCCTCACAGCTTGGTGCCGACAGCACCGGAGGGAGATC
GACACTTGCTCGTACATATCAAACGTCCAAGTGTCGATCGAGCTGAAATT
GTGAAAGGTCTGTACTTACAGCTCGCCCCTCCTTTTACCATGGAAACCAC
GAAGGTTAACGTCTGGCTCCTTGTCTTATCATTGACAATCTTAAAAGGGA
CAAACATCGTCTCAGGCTACCCAAGCATCACATTTACGTGTGTCCGTAAC
TGCGGCTCCCTGGTGGATGAAGCGGCAGTGTTCGGGATCCAGGCTATATG
TAACGACTGTCGGGATCCCAACAGAGAGCTGACGTTCGTCTGGCACATGT
ACGAGACAGACTTGAGAACTGACACAAGCCGGGAGATCTCCGATCTGTCC
TCCATGCAAGTCTCAGGTTTAGATCCTCACAGCTTGGTGCCGACAGCACC
GGAGGGAGATCGACACTTGCTCGTACATATCAAACGTCCAAGTGTCGATC
GAGCTGAAATTGTGAAAGGTCTGTACTTACAGCTCGCCCCTCCTTTTACC
ATGGAAACCACGAAGGTTAACGTCTGGCTCCTTGTCTTATCATTGACAAT
CTTAAAAGGGACAAACATCGTCTCAGGCTACCCAAGCATCACATTTACGT
GTGTCCGTAACTGCGGCTCCCTGGTGGATGAAGCGGCAGTGTTCGGGATC
CAGGCTATATGTAACGACTGTCGGGATCCCAACAGAGAGCTGACGTTCGT
CTGGCACATGTACGAGACAGACTTGAGAACTGACACAAGCCGGGAGATCT
CCGATCTGTCCTCCATGCAAGTCTCAGGTTTAGATCCTCACAGCTTGGTG
CCGACAGCACCGGAGGGAGATCGACACTTGCTCGTACATATCAAACGTCC
AAGTGTCGATCGAGCTGAAATTGTGAAAGGTCTGTACTTACAGCTCGCCC
CTCCTTTTACCATGGAAACCACGAAGGTTAACGTCTGGCTCCTTGTCTTA
TCATTGACAATCTTAAAAGGGACAAACATCGTCTCAGGCTACCCAAGCAT
CACATTTACGTGTGTCCGTAACTGCGGCTCCCTGGTGGATGAAGCGGCAG
TGTTCGGGATCCAGGCTATATGTAACGACTGTCGGGATCCCAACAGAGAG
CTGACGTTCGTCTGGCACATGTACGAGACAGACTTGAGAACTGACACAAG
CCGGGAGATCTCCGATCTGTCCTCCATGCAAGTCTCAGGTTTAGATCCTC
ACAGCTTGGTGCCGACAGCACCGGAGGGAGATCGACACTTGCTCGTACAT
ATCAAACGTCCAAGTGTCGATCGAGCTGAAATTGTGAAAGGTCTGTACTT
ACAGCTCGCCCCTCCTTTTACCATGGAAACCACGAAGGTTAACGTCTGGC
TCCTTGTCTTATCATTGACAATCTTAAAAGGGACAAACATCGTCTCAGGC
TACCCAAGCATCACATTTACGTGTGTCCGTAACTGCGGCTCCCTGGTGGA
TGAAGCGGCAGTGTTCGGGATCCAGGCTATATGTAACGACTGTCGGGATC
CCAACAGAGAGCTGACGTTCGTCTGGCACATGTACGAGACAGACTTGAGA
ACTGACACAAGCCGGGAGATCTCCGATCTGTCCTCCATGCAAGTCTCAGG
TTTAGATCCTCACAGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000086 | genome | Sc0000086:1150864..1154973 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96189_cuf0 |
| Biotype | protein_coding |
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