transcript:BL90875_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL90875_cuf0
Unique Nametranscript:BL90875_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL90875_cuf0

>transcript:BL90875_cuf0-protein ID=transcript:BL90875_cuf0-protein|Name=transcript:BL90875_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=125bp
MKLKWPNNRLGDEFNTFKINSLHIENAFITCTLFFKWENNQRAVKYCNIF
IQAVDSKNSMYNIFDRVALIHLVHASVNTYIINTAQISVSVPFGTCIKYD
TMRLNCVLQHTTFKFSPPFCNSSSI
Run BLAST on NCBI

mRNA from alignment at Sc0000019:1112544..1113086+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL90875_cuf0 ID=transcript:BL90875_cuf0|Name=transcript:BL90875_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=543bp|location=Sequence derived from alignment at Sc0000019:1112544..1113086+ (Branchiostoma lanceolatum)
GTTGACTTCATAATGAAGGAAACTTGTTTTTTTTTTTCTCCAAATCTTTA
TTCGTACGCTCGCATCAGTTTTTGGGGTTCCCAGATGATGCCATCCATAT
AATGAAATTAAAATGGCCTAACAACAGGCTAGGCGATGAGTTCAACACAT
TCAAAATTAATTCATTACACATTGAGAATGCGTTCATTACATGTACTTTA
TTTTTCAAATGGGAAAATAACCAGCGGGCGGTTAAATATTGCAACATATT
CATACAGGCTGTAGATAGCAAAAATTCTATGTACAACATTTTTGATAGAG
TAGCCTTGATACATTTAGTTCATGCGTCTGTTAATACTTATATCATTAAT
ACGGCTCAAATTTCCGTTTCTGTCCCCTTTGGCACGTGTATAAAATACGA
CACCATGCGGCTCAACTGTGTACTGCAGCATACGACGTTTAAGTTTTCAC
CACCCTTCTGCAACTCAAGTTCTATCTAGAACAAAAGTTTCGTATAAAGA
TTTGTAAAAATGATGCACACCGTCAAATATTTAAGTATATACA

Coding sequence (CDS) from alignment at Sc0000019:1112544..1113086+

>transcript:BL90875_cuf0 ID=transcript:BL90875_cuf0|Name=transcript:BL90875_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=378bp|location=Sequence derived from alignment at Sc0000019:1112544..1113086+ (Branchiostoma lanceolatum)
ATGAAATTAAAATGGCCTAACAACAGGCTAGGCGATGAGTTCAACACATT
CAAAATTAATTCATTACACATTGAGAATGCGTTCATTACATGTACTTTAT
TTTTCAAATGGGAAAATAACCAGCGGGCGGTTAAATATTGCAACATATTC
ATACAGGCTGTAGATAGCAAAAATTCTATGTACAACATTTTTGATAGAGT
AGCCTTGATACATTTAGTTCATGCGTCTGTTAATACTTATATCATTAATA
CGGCTCAAATTTCCGTTTCTGTCCCCTTTGGCACGTGTATAAAATACGAC
ACCATGCGGCTCAACTGTGTACTGCAGCATACGACGTTTAAGTTTTCACC
ACCCTTCTGCAACTCAAGTTCTATCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL90875gene:BL90875Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL90875_cuf0-E1BL90875_cuf0-E1-1564476830-141536Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL90875_cuf0transcript:BL90875_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000019genomeSc0000019:1112544..1113086 +
Properties
Property NameValue
Transcript idBL90875_cuf0
Biotypeprotein_coding