transcript:BL87768_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL87768_cuf0
Unique Nametranscript:BL87768_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL87768_cuf0

>transcript:BL87768_cuf0-protein ID=transcript:BL87768_cuf0-protein|Name=transcript:BL87768_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=164bp
EGLVLMESVSPGDVNTILFGQSWLHLDKPKLNQLTSTQLQAKPDSTPCLL
LQALQLPYRHSRQQAINQVIDVVLQHGETDAMYKHMAYMYYALGRTIWQT
TRQPAPALSACASALMHKSDHLPTLYFTAWCSMDVSVPQAIRQFHHYIHT
APTDHYWVPLAHYH
Run BLAST on NCBI

mRNA from alignment at Sc0000081:759294..759786+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL87768_cuf0 ID=transcript:BL87768_cuf0|Name=transcript:BL87768_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=493bp|location=Sequence derived from alignment at Sc0000081:759294..759786+ (Branchiostoma lanceolatum)
GGAGGGGTTAGTGCTGATGGAGTCTGTGTCACCTGGTGATGTTAACACAA
TCCTGTTTGGCCAGTCCTGGCTGCACCTGGACAAACCAAAGCTGAATCAA
CTCACTTCCACACAGCTCCAGGCTAAACCTGACAGCACCCCCTGTCTGCT
CTTACAGGCACTGCAGCTTCCCTACAGACACAGCCGACAGCAGGCCATAA
ACCAAGTGATTGACGTTGTTCTACAGCATGGAGAAACAGACGCCATGTAC
AAACATATGGCTTACATGTACTACGCTTTAGGCCGTACAATATGGCAGAC
CACCAGACAACCAGCCCCAGCCCTATCTGCCTGTGCCAGTGCCCTTATGC
ACAAATCTGACCACCTGCCAACCCTGTACTTCACAGCATGGTGTTCCATG
GATGTGTCTGTCCCACAGGCCATCAGGCAGTTTCACCACTACATCCACAC
AGCTCCTACAGACCATTACTGGGTGCCCCTGGCTCATTACCAC

Coding sequence (CDS) from alignment at Sc0000081:759294..759786+

>transcript:BL87768_cuf0 ID=transcript:BL87768_cuf0|Name=transcript:BL87768_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=492bp|location=Sequence derived from alignment at Sc0000081:759294..759786+ (Branchiostoma lanceolatum)
GAGGGGTTAGTGCTGATGGAGTCTGTGTCACCTGGTGATGTTAACACAAT
CCTGTTTGGCCAGTCCTGGCTGCACCTGGACAAACCAAAGCTGAATCAAC
TCACTTCCACACAGCTCCAGGCTAAACCTGACAGCACCCCCTGTCTGCTC
TTACAGGCACTGCAGCTTCCCTACAGACACAGCCGACAGCAGGCCATAAA
CCAAGTGATTGACGTTGTTCTACAGCATGGAGAAACAGACGCCATGTACA
AACATATGGCTTACATGTACTACGCTTTAGGCCGTACAATATGGCAGACC
ACCAGACAACCAGCCCCAGCCCTATCTGCCTGTGCCAGTGCCCTTATGCA
CAAATCTGACCACCTGCCAACCCTGTACTTCACAGCATGGTGTTCCATGG
ATGTGTCTGTCCCACAGGCCATCAGGCAGTTTCACCACTACATCCACACA
GCTCCTACAGACCATTACTGGGTGCCCCTGGCTCATTACCAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL87768gene:BL87768Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL87768_cuf0-E1BL87768_cuf0-E1-1564476830-278394Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL87768_cuf0transcript:BL87768_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000081genomeSc0000081:759294..759786 +
Properties
Property NameValue
Transcript idBL87768_cuf0
Biotypeprotein_coding