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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL83940_cuf0 >transcript:BL83940_cuf0-protein ID=transcript:BL83940_cuf0-protein|Name=transcript:BL83940_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=111bp
MDSQKLPFSNREPPLEFGTQEVKIIRRKGEKVTARKNLVTPRSLQDCLEG
GKMWESKLPEWYSSTQLLVRQRPMDIEDQQKAASWIKKPPPGVLLKDIKT
LQDGEWLSAFV Run BLAST on NCBI mRNA from alignment at Sc0000992:5884..8285- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL83940_cuf0 ID=transcript:BL83940_cuf0|Name=transcript:BL83940_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2402bp|location=Sequence derived from alignment at Sc0000992:5884..8285- (Branchiostoma lanceolatum)
TGCACAGTTGTCATAAAGATGTACAGCTGGGAGTTTTTTTTAATCCAATC
CTGACAAATTTAGGCAGTCTGGCACCCAGGCTAGCCTGACTGTGTTTACA
TGAAATTTTAGTCCTGTCAGCACTTCCCGGTCCTGGATTTCATTTTTGTG
CAAGTTATCAATGAAGACTTCTCTATATTAAAGATCTTCATTCATATATT
ACTGAACTTCTCAGTGTCCTCTGTCATGTAAACATGTATTTATGCCCAAT
GATTTGTTTTCTGCGAATATCATGAAATGCCTTGACCTGCCTACCCTGCC
TGTTATGAAATGAAATGAAAGTAAATGTACTTACCCACACACAGATGGTC
CCAGGTTTCCCTTGGACTCTTGAGATGCTTTTCACTGGTATCCACTCCTT
ATCCTCCAAGTAGGAACAGATGAAACCCACTTTCTTCGTTTTGCCGCCCT
TTCCAGTCACAAAACCCCAAGTAAACTCAGGAACAGATGCTGATTCTGAG
AGTGAACTTGCTTCGCTAGAAGAAGACTCACTTTCTGATTCAGAATAATC
TAAATAAGAATCCATGACTTGATGCCCCTGGCAGACAGCTTCAAATGACT
AGACTTTAGGAGCCTCAGAAACTTGCTGGCAGTTGATCACAGCAAGCAGC
GTCGACAGACTGACAAAAAACATAGTTTCAAGGACTGGTGCCGCTGGGAT
CGGATCGGGTGTCCTGTGCTTGCGCGCGTGCCAGCCGGCCGGGGCGGAGG
GCGGAGTCACTGGAGTTTTTAAGTCTCCTTTCTTTGACGGTCTGACGGCC
TTTACCCGCCCGGCCTTTGATTGACATTGCTGCCATGGAAACTGTACCAA
AGAGCGGGAAGCTTTGCATATATTAACCAAATATGGACTCACAGAAGTTA
CCCTCCCAACATGCTTGCCGTAAACATGCTTGCCGATTTTTTTTCTGTCC
CAGGAAAACGTGTGAGAATGCCTAAAATCCATCACACAGAGGATTTGCTA
ATAGAGAATGTTTGTTACCAGTGGCTGTGTAACATTGTTTACATTGCTTG
TACTTCTCTTTCCCCAGTGGCAAATGTGCCGCTGGGATCGGATCGGGTGT
CCTGCGCGCGTGCCAGTCGGCCGGGGGGCGGAGTTTTAAAGTCTCCTTTC
TTTGACGGTCTGACGGCCTTTACCCGCCCGGCCTTTGATTGACATTGCTG
CCATGGAAACTGTACCAAAGAGCGGGAAGCTTTGCATATATTAACCAAAT
ATGGACTCACAGAAGTTACCCTCCCAACATGCTTGCCGTAAACATGCTTG
CCGATTTTTTTTCTGTCCCAGGAAAACGTGTGAGAATGCCTAAAATCCAT
CACACAGAGGATTTGCTAATAGAGAATGTTTGTTACCAGTGGCTGTGTAA
CATTGTTTACATTGCTTGTACTTCTCTTTCCCCAGTGGCAAATGTGCCGC
TGGGATCGGATCGGGTGTCCTGCGCGCGTGCCAGTCGGCCGGGGGGCGGA
GTTTTAAAGTCTCCTTTCTTTGACGGTCTGACGGCCTTTACCCGCCCGGC
CTTTGATTGACATTGCTGCCATGGAAACTGTACCCAAGAGCGGGAAGCTT
TGCATATATTAACCAAATATGGACTCACAGAAGTTACCCTTCAGTAATAG
AGAACCCCCTTTGGAATTTGGAACGCAGGAAGTAAAAATTATACGCAGGA
AGGGCGAAAAGGTCACGGCAAGGAAGAATTTGGTGACACCGAGAAGCTTG
CAAGATTGTTTGGAAGGTTAGTTACTTTGAATCGTCTAGTTGAATCTCAA
TTTTCACAGTTTTCAAACAAGATATTAGTCCTTATGAGATGCAACATGAT
GTTACTGAAGAACACACTAATGAAAACATTCTTCTTTTTGTTTGTTTTGG
AATTTAGGCGGGAAAATGTGGGAGAGTAAGTTACCAGAATGGTACAGTTC
CACACAACTCCTCGTGAGACAGAGGCCTATGGACATAGAGGACCAGCAGA
AGGTAAACATCCATGTCAGTCCTTCATAATTAAATTATATCAATTTGGTC
CTTGATTATTTTGAGGCCTTTATGCCCAGAAACTAATACATACAAGAAGG
ATCTCAGGTTAAAATAAGACCTCCTTGCATTAAGCCATACTCTATAGAAC
CTGAGGCTACTTGGAATTCACAAAAGGTGAGAACGCCTAATGAAGATTGT
GGAGAGATTAGTATTAGAAGTACCAGTTATAATGCACAATGCTTTCCATC
AGACTGTTTTTTTTTTAAGTTGATCATTATTTCCCATGGCCTGTTGTACA
ATTCATGCAGGCTGCAAGTTGGATCAAAAAACCTCCTCCTGGTGTGTTAC
TTAAAGACATTAAGACTCTACAAGATGGAGAATGGTTATCTGCCTTCGTA
AG Coding sequence (CDS) from alignment at Sc0000992:5884..8285- >transcript:BL83940_cuf0 ID=transcript:BL83940_cuf0|Name=transcript:BL83940_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=999bp|location=Sequence derived from alignment at Sc0000992:5884..8285- (Branchiostoma lanceolatum)
ATGGACTCACAGAAGTTACCCTTCAGTAATAGAGAACCCCCTTTGGAATT
TGGAACGCAGGAAGTAAAAATTATACGCAGGAAGGGCGAAAAGGTCACGG
CAAGGAAGAATTTGGTGACACCGAGAAGCTTGCAAGATTGTTTGGAAGGC
GGGAAAATGTGGGAGAGTAAGTTACCAGAATGGTACAGTTCCACACAACT
CCTCGTGAGACAGAGGCCTATGGACATAGAGGACCAGCAGAAGGCTGCAA
GTTGGATCAAAAAACCTCCTCCTGGTGTGTTACTTAAAGACATTAAGACT
CTACAAGATGGAGAATGGTTATCTGCCTTCGTAATGGACTCACAGAAGTT
ACCCTTCAGTAATAGAGAACCCCCTTTGGAATTTGGAACGCAGGAAGTAA
AAATTATACGCAGGAAGGGCGAAAAGGTCACGGCAAGGAAGAATTTGGTG
ACACCGAGAAGCTTGCAAGATTGTTTGGAAGGCGGGAAAATGTGGGAGAG
TAAGTTACCAGAATGGTACAGTTCCACACAACTCCTCGTGAGACAGAGGC
CTATGGACATAGAGGACCAGCAGAAGGCTGCAAGTTGGATCAAAAAACCT
CCTCCTGGTGTGTTACTTAAAGACATTAAGACTCTACAAGATGGAGAATG
GTTATCTGCCTTCGTAATGGACTCACAGAAGTTACCCTTCAGTAATAGAG
AACCCCCTTTGGAATTTGGAACGCAGGAAGTAAAAATTATACGCAGGAAG
GGCGAAAAGGTCACGGCAAGGAAGAATTTGGTGACACCGAGAAGCTTGCA
AGATTGTTTGGAAGGCGGGAAAATGTGGGAGAGTAAGTTACCAGAATGGT
ACAGTTCCACACAACTCCTCGTGAGACAGAGGCCTATGGACATAGAGGAC
CAGCAGAAGGCTGCAAGTTGGATCAAAAAACCTCCTCCTGGTGTGTTACT
TAAAGACATTAAGACTCTACAAGATGGAGAATGGTTATCTGCCTTCGTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000992 | genome | Sc0000992:5884..8285 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL83940_cuf0 |
| Biotype | protein_coding |
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