BlTCONS00008155 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00008155
Unique NameBlTCONS00008155
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000002:5302543..5310301-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00008155 ID=BlTCONS00008155|Name=BlTCONS00008155|organism=Branchiostoma lanceolatum|type=mRNA|length=7759bp|location=Sequence derived from alignment at Sc0000002:5302543..5310301- (Branchiostoma lanceolatum)
TCCTTTGAGTTTTGCGCGCGTGTCATCGGGTGCCCCTCCCCAAAATACGC
TGCAGCAAATTCACCTTGACTCGGTGGTAGTGTGTTTTGCGTAAGTTCTA
TTGAAAAATGAAAATGCAGTGTGCGTATATCATATACGTGATGTCTGTTC
TTGCTGTTACCAAAAGTCAGCTTACTCCGATGAATAGTTTTAACATTAAC
ATGAATAGTATTGACTTGTCCCTGTATATGCGACGAACTGAAGAGGACTG
GACTGCCTTTAAAACTGTAAGTATATTGTGCCATCATTTGTGACGTATTT
GTCTTGCAAAGCGGGCTTGAGCTTCTTTTACTAACCTAGATTATCACATC
ATATCACTGTAAGGCATGCCTTATATGTGACATATCTTAATGTCAGGAAC
GTCTTACTTCAAACGGTAACGGAAGTTACAAAATGTGTACATTTATATGA
GAACGAGCGTATATGCAAATATCATGTCCTTGATGTATCATTTATGTTTG
TGAATGTAGGGCTCGCTGCGACCCGGACTGAACGGGAGCGACGGTTTAGT
TGGAGCTGCGAACTGGGAACGTTGGCAGGTCTGGAGAACAGGCAGCCCTC
TGCCTTCGGGGTACAAACAATCCCAGAGACCGAACGAGCAAGGTACTGAA
ATAAGATTTATAGATACAGTCAAACCTGTACAAGTGATGGCCTCTACATA
TACATAGACTCTAAGGGCCACCAGGCCAATGTGACCTCTTTTTTGGAAGT
ATTTTGGATATATTTTTTCCTATTGATACAAGCATTAAGACTCGTGTGCA
TAGGTTCCTTGGGTGGTCTTCTTCGGCATTAATATAGTGACCACCTGTCC
ACATAGGCCAGATTCAATCGGTCTCCTGAATGGTCTTCTTGGGCAGTTTT
GCCTGTACAGATATATAAACTATCATCATCACCCCCATCGCTACGTTTTT
TTAGATATCATTCGAGTGTCTTCTGTCAAGCAGATACGCTGAGCTAGTTG
AAGTAATAGGTGGACCGTCCTATTTTATTCCAAGCAATAAAATAATTGCG
TTTTTTTGTTGTAAAGGCTTGCATGTGGTAAATGGCTGTAAATATTTCAT
GAAGGCACTGATGGTCCACTTAGGAATCGCTTCTTAATTACATTTCTGTG
TCCTGTATTCAGCACAGACTGAGTTGCTTGAGAAATATCGTTCATAGTTG
GTTGCTACTGAAATAAATGTAAATGCACAAAACTGTATGTACGCGGTGAC
GTGAAGAAAGAGAGGCGTAGTTATAACTACGATAATATAACATGCCAACC
AATGAGTACTTTAAAACGTTGGCAATTTCAACATCCAAAAAAAACGAAAA
TTTACATTGCAACGTTCCCAAACTGCCTCCAATATCACATTCACATCTGT
TGTTGTTGATGTCTAATGGTGAGGTCAGAGGTGAAAGCATTCTTTTTATC
TAATAAATGTACAATTCTATATCTACATATAGTAAGTAATTCGTACAATC
CAGCTTCTGACACATTTGATACATGAATGTTATTCCATACCAAAGTATAT
TGTTCTCAGACTGGTAATTGTTTCACTTGTTGTTGTTTTTTTGCTTGTTT
AGAACGATGGACTGATGTTTCCTCAAGAGTACACATTCGGAACATAGAAT
GGCTGTCAGAGGAACACTCGGTAAGATAGCGTTGAACAGAAATTAGAAGT
AATAGGTAATCAGCACCAAGGACAGGGAAATACAGTGAGCACCAGGGACA
GGGAAACACGGTTTGAACGTCCATGTCCTTGATGCTAACTGTGTCCCCCT
ATCCCTGTTGCTGATATAACATGTTTTTGAAAATAATGAGGAATGATAAC
ACACAGACCTTGACAATAGCTTGCACAAAGCATAATTGTTGTTTGCTACT
TTTTCACTGTGTCCAAGGTATAATCTCTCTATCGTATATGAACATGTCTT
TATTTGTCTCTTTCTAGTTCTTAAGACATATAAGAGACATTCACATATTT
GATTTCAAGGAAGAGGGGTAGAAAACTGAGAATAAACATAGTATCACAAT
AAAAAAATTATATACCCAATTAAATTGATTTCTGTATTATTACACCGTGC
TTAATTGGAGACATTGAGAAACAACTAATTGGAAACAGGATCGCAACGGT
GAGGATGCTACCAGTTTCAAATTTCCATTCCCAAATGTGTTTGTATGCCC
GTATTTTCCTCACAGAACCTGAGCACGACGATGGAGTACAACCTGGCCTG
GGTGGACCCGCGGCTCGGCGGCCTGACGGCGTCGTGGTTTCCCGTNGTCT
GATGGCGTCGTGGTTTCCCGTCCCCGCCGACCTGGCCTGGACTCCCCCGA
TGTCTTTTGGCCGGAACGTTCGGCGGACGTCTGTTGTTGACCAGGGAAGC
AAGTCGAACAGCGGGATCTCCATGTGGCTCCATCGAAGCGGGATAGTGTT
TTATAGAATAACGTACTAACCATGTATTCTATTCTTACGTCACACAAAAT
TCTAAACTTGACTTTGCTCTGTTAGAAGATTATTTGTGCTCTAGTATAGC
TCTTAACTACACTTAATCCTGAAAGAAACTTTAAAGACAATAACTAAGTA
TTTTTCTCATCTCCATAGATGATAAGTATGATGAAATTTGAACTAAAAAT
TCATTTACATTTTATTTCTTTGATTACATCAGATCACCGGTCATATTCTC
AATTATAGAAAGAAACTCCACGTAAGATCATTTAGTAGGCGATTGCGTTA
CATGTCTTTTAGTTAGTGCCTAACAAGTTTAAAATGGATTGTGTTGTTTT
CTTTCTGTACTTAGTTTTTTTTCTCATTGTTTTTACTTACGTGATCTATT
TGTAATTCATGTTGCTGCAGTCGTGCCTTGAAGCTTACATGTAGTGTTCA
ACTGTGGCGGTATCCCTTCGATTCACAAGTGTGTAGTGTGAAACTGCACG
GATGTAAGTACGGATCCTAACATTATCACTGCTATAATCAAAATATACAA
GTGTCTACCGCTTCAGGTGGCATGGGTGCCGCTACGTAGCTTACTAGAAC
ACGTATCATCGAGATTATGTGTAGTATTTGTGCACAGAAACATCGTATGC
CCTAGGGTCAGAGTCCAAGGTGGCCTGATGTTTACCATTGACTATGAACA
TCGAAATAGAAGAAGCAGCCTTTTCATTGACCCCTACATCTTTTCCGTTT
AATCAACAGATAATGGCGTTAGGTTTAATGTCCTGCCGTCCAATACAAGT
CACCAGCCCCCCCATCACTGCAGACGCCACGGCTGTGAGGTCACAGTTCA
TGCTAACAGCGGTAGAAATCAGAATAGAAAGGGACTCTTTTCTTACCGAT
GGGCCAGGTATGTCTCTTCATGATGGGGTAGGGGATAAATGCATGGCTGA
GATACAGCAAGGGTTCCTATACTCACCAATGTTTCCCTGCCCTTGGTGCT
GACTGTGTTCTCCTTTCATTTGTGCTGTGTTTCCACGCCCTTGACTCTGA
CTGTGTTTCCCTGTCCTTGGGTTCTGACTGTGTTTTCCTTTCCCTGGTGC
CGGTTTTGTTTCACTGTCCCTGGTGCTGACTGTGTTTCCCTATTCATGGT
TCTGTTTCCCTGCACCTGGTGCTAAATGTGTTTCCTTGTCCCTGGTACTG
ACTGTGTTTCCCTATTCCTGGCGCTGACTGTGTTTCCCTGTCCTTGGTAT
TGACTATGTTTCCCTGTCCCTGGTGCTGACTGTATCACCCTGTCCTTGGT
ACTGACTATGTTTCCCCATCCCTGGTGTTGACTGTGCTTCTCAGTCCCTG
TCAATGACTATGTTTCCCTGTCATTGATGCTGAACAGAGCAGAACTAGAA
AATTAATGTAGTAGATGCCACGGACAAATATTATGTTCATTTGGCAGATA
CATGTAGATGAAAATCACAAGCTTAGCCCCTGTGTCGTTCCTTCTCTTAC
AGGCTGTAAGTACTTCAGTGAGAAGTGTGACCATGACGTTGAACATTGTC
TGGACGCTGCCTCCTGTCGCGATGACGAAGTTTGCCAGGAGTGTAAAAGA
AGTGTGGGACGGTGTTCACACGACCTTCACAGCTGTGACGAAAACAACGG
TTGGTTTTGTTATCTATCACAAATGGTTACTGTTTCAGGTTCTTTATGGC
AGAAAAAAGGTGTGGCACTGAGGTCATTACAGGTTTGCGATAGCAAAACC
TATTGTATTTGTGCTGGCAACTATGGGCGACGCCATGTTGGGTGTTACCA
CTTTGACGGGAAGGGGTGCCTTTTCCCCTAGTTTTAGTACGGCTTTTCAA
AGAGCTGTCTGTTTGTTTGTTTGTTTCAGATTCGAATGATTACACAACAC
TGGAAGTGCGCATCCATCTCAGACGCCGCCTTTTGTCCTACTTCTTCACG
ACGTTCATCCCGTCCACAGTGGTGGTCACCGCGTCCTTCTTACAAGCATG
GCTGNGGTCGTCGCGTCCTTCTTACAAGCATGGCTGCCGCTCGTCCCGAC
AGCCATTGCGGGCCGGTTCGTGCTGGGCATCTTTGCCGTCCTGGTGATGA
TATCCGGAGACAACATGAAACACCTCATCTTACGGGTAACTTCAGCTACC
ACTTAGAATGACATTATGGATGTTAGACTGTTTTTAAAGTAACTTACCAT
CGAAATACCCCAAATACAACACATGTATTAGTACTCAACTTTTGGGTGGA
AAGGCGCGCAGTGTCTGACCTGAGCCCATGTAACCTCCATTAACATTAAT
CCGCCGGGTTACATAAATCCGCCACTTTGAAAAAACAGTGGGCTTGAGAG
ATCTCTAGTGCAGCAGTCCCCAATCCCCAGGTATGTACAGTTTAGATATA
CAGGGGTGTATTATACTGGGAATGTTGGGTTGGAGATCTGTTTGGACGTA
TTTTTCTGGGTGGCGGAATTATGTACCTAGTTGAATCATGTAACTAGATG
TTACAGGAATGATTTATAATTTCACTTCTTTGGCTTTCTTATCTCTACAG
TTGTCGGAGGCGCGTGCCATCGACATCTGGATAATGACGTGTATCCTGTT
CGTCACACTGGCCCTGCTGGAGACCTTGGTCGTACATTTCATTCACGACA
TGCTGAAGAGACAGGTACGTTCATATCACGTATTATCATATAGGTAGATG
TCGTCGACCAATCAGAAGGCTCCATTTGCGGGCCTGCATTCTTCATACAG
ACCTAAAAGCGGGTCTGTAAACTTCGTACGGACCCACGAGTCTGTAAACT
TCGTACGGACCCGGTGTTCGAACGTTACCATTAATGACAGGGGGTTAATC
GTTTTGTTTTCCAACTCCATGTTAAGACAAATACTACACAAATCAAATAC
TACACAATGTATTACTAACTACTATATGGACAATGGCTATATGATAATGA
CATTAATGACCCGCTTTCCTTCGGTCTATACGGTGTGATAAGGCATGGTC
GTTCCTATAACCACCTCTTCGCGACCTCGGCACTTTATTCGGTGGTTATA
GGAACGATAATGACTTATCACACCGTATAGACCTCAGGGCGGGTCATTAA
CCCTATATTACTTCTTCAATATTTTAGTTAATTTCTGCAAATTGTGACAA
CCAATTGGAGACATTAAGGCTTGAAACTGACATGTATAACATACTCTGGG
CGGACACAATTGACTGTCATCACATTAAGCTGAAATATCATGATTAAAAA
TGTGCTCTCTGCAACGTGTGCACTTTGGGTACGATGATTTTAACCATGCA
AGGAGCATGGTATTTTTTTAAAAGAAATACCATGCTTCTAACGCACATTT
TATATGCACACTGTGATTGATATCGTTCTAACACAATTCTTGTCAGGAAA
AGAAGGCGTCACTGGAGCGCACGCCATCTTTCCACATTCCTCGGCCTCAC
CTGAAGCGCCCCCTGCCCGCCTGGTGGTATCGTCTGCCCAACAAACAATG
GATGACCATGTACAACCCTTACATACCCTCATCATCATCTGGAGCTGTGG
AGGTGGACATGTCTGCTTATGAGGTATAAAATCTACTAACAAAGTTCCGC
CAGAAATGTAACGTCCAAACAGATCTCCAATCCAACGTCCCCCAGTATAA
TGCACTTCTGTATATTTAAACTGTACATACCTGGAGGTGCTGCACTAGAG
ATCTCTCAAACAGTGTTTTTCAAAGTGGTGGATTTATGTAACCGGGTGGA
TCAATGTTCATTGAGGTTATAAACCTACAAATCATGCAGTAATCCCTTAA
CAAACGTCACTCTTAATGCATGCATGTTGATTGTCAAGGAATGAAAAGAA
AGTAAGTGAAAGTGCCAATATGAACATACCGGTATCACGACATTTACTTT
CAGCATACGCTTTAAAGTTAGGACCATAGTGTGTCTAAATGTTTGAAGCT
TTTTTCCCTACACTTGAGGACTATCGTGTGTTTACAAGCATTTTCTTGAA
AATTTTCACTTGTGTAACTTGACTGTGCATGAATAAAGTCGACGTAATGC
AGCAATGAACTCATGCGTTGGTGAAGTTTAGACATCCAGATAACAGTTAC
TGAATCCACTGGATTGGTTTTGGAAACGAACAGACGTTTTCGGTAGCATC
CACTACCTTTCGTCAGTGACTGGATGAGATTTCTGGTTCACCAGGCTTCA
AGGAAAAACTATATTTGCATATCAATTCATAGTTTTTGCTTAAAACCTGG
TGAACCAGAAATCCTGTCCAGTCACTGACAAAAGATAGTGGATGCTACCG
TTTTGAAAACGTCTATCCCAATTGCTTGAGTAACTGTTACCTTGCAGTGA
ACTCGTATTATAGAACGCGCAGGAAAATGCTAACAGGATTTTCTTCACCC
AAGGACGAGAAAACAAAGAGCAACTTCAAACCCCTTGTCAACATTCCACG
GGCCAAGTTCAGGCAGCCGGGCATTGCATCATGGGAGCAGCTTCCCAGCA
ACCAGTGGAAGGTCCAGCTGAACTACGGCTCCAGAGCCCGGACCGGGGAA
CTCTACCACACGGAAAGACTGCCACGGTCAGAGGAGATGCCACGAAAGAT
AGATCGAGCCGCAAGAATAGCATTCCCCTGTGCCTTCTTGCTGTTCAATC
TATGGTTTTGGCTGTTCTACCTTCTATTCTAATGTCTTTTATTTATTTAA
TCTTCATCGTCTTGTTTCTTTATCTCTTTATTAGACTTATCCGTTCTCCG
AGAAGTTTTCATTCTATTCTCATTACATTACACCATACTATATCATATCA
TATCACATTATACTATAATCTATATCACATTATACTAGGTTGTAGTATGT
TATATCCTGTTATATCATATCATATCATATCATATCACATGATGTCATAT
CATACGTCCTATTATATTGCAGTATATCATATTCTGTTGTATCATTATAT
CATATATGCATATCATATCATATATGATATATTAAATATCATATTATATT
GTATCATATTGTATCATATCATATCATATTATACTATACTATATAAGATC
AGATCATATTATATCATATTATATCACATGGAAGAAAAGGGACGCTAGTA
TATGAAATTGTTGTATGGTATGATATGTATTTTCGCATTGAATAGTGTGT
GTTGCTTTCAATATAGAAAGATAGAGCATTAATGTATTGTTCAAACCAGG
TCAATATTTGAAAATCTGAAAGTCCATGTATACCCTGTGTCTTTGTTGGT
ATAAACTATGAATCATATATCCTTGTGAATTTTATCATCAATAAATATAA
ATGTCATCG

Coding sequence (CDS) from alignment at Sc0000002:5302543..5310301-

>BlTCONS00008155 ID=BlTCONS00008155|Name=BlTCONS00008155|organism=Branchiostoma lanceolatum|type=CDS|length=708bp|location=Sequence derived from alignment at Sc0000002:5302543..5310301- (Branchiostoma lanceolatum)
ATGGCTGNGGTCGTCGCGTCCTTCTTACAAGCATGGCTGCCGCTCGTCCC
GACAGCCATTGCGGGCCGGTTCGTGCTGGGCATCTTTGCCGTCCTGGTGA
TGATATCCGGAGACAACATGAAACACCTCATCTTACGGTTGTCGGAGGCG
CGTGCCATCGACATCTGGATAATGACGTGTATCCTGTTCGTCACACTGGC
CCTGCTGGAGACCTTGGTCGTACATTTCATTCACGACATGCTGAAGAGAC
AGGAAAAGAAGGCGTCACTGGAGCGCACGCCATCTTTCCACATTCCTCGG
CCTCACCTGAAGCGCCCCCTGCCCGCCTGGTGGTATCGTCTGCCCAACAA
ACAATGGATGACCATGTACAACCCTTACATACCCTCATCATCATCTGGAG
CTGTGGAGGTGGACATGTCTGCTTATGAGGACGAGAAAACAAAGAGCAAC
TTCAAACCCCTTGTCAACATTCCACGGGCCAAGTTCAGGCAGCCGGGCAT
TGCATCATGGGAGCAGCTTCCCAGCAACCAGTGGAAGGTCCAGCTGAACT
ACGGCTCCAGAGCCCGGACCGGGGAACTCTACCACACGGAAAGACTGCCA
CGGTCAGAGGAGATGCCACGAAAGATAGATCGAGCCGCAAGAATAGCATT
CCCCTGTGCCTTCTTGCTGTTCAATCTATGGTTTTGGCTGTTCTACCTTC
TATTCTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00008155-exon-Sc0000002-1564993656:5310036..5310301BlTCONS00008155-exon-Sc0000002-1564993656:5310036..5310301Branchiostoma lanceolatumexon
BlTCONS00008155-exon-Sc0000002-1564993656:5309660..5309792BlTCONS00008155-exon-Sc0000002-1564993656:5309660..5309792Branchiostoma lanceolatumexon
BlTCONS00008155-exon-Sc0000002-1564993656:5308632..5308699BlTCONS00008155-exon-Sc0000002-1564993656:5308632..5308699Branchiostoma lanceolatumexon
BlTCONS00008155-exon-Sc0000002-1564993656:5307840..5308086BlTCONS00008155-exon-Sc0000002-1564993656:5307840..5308086Branchiostoma lanceolatumexon
BlTCONS00008155-exon-Sc0000002-1564993656:5307349..5307431BlTCONS00008155-exon-Sc0000002-1564993656:5307349..5307431Branchiostoma lanceolatumexon
BlTCONS00008155-exon-Sc0000002-1564993656:5306945..5307092BlTCONS00008155-exon-Sc0000002-1564993656:5306945..5307092Branchiostoma lanceolatumexon
BlTCONS00008155-exon-Sc0000002-1564993656:5306203..5306349BlTCONS00008155-exon-Sc0000002-1564993656:5306203..5306349Branchiostoma lanceolatumexon
BlTCONS00008155-exon-Sc0000002-1564993656:5305717..5305972BlTCONS00008155-exon-Sc0000002-1564993656:5305717..5305972Branchiostoma lanceolatumexon
BlTCONS00008155-exon-Sc0000002-1564993656:5305188..5305301BlTCONS00008155-exon-Sc0000002-1564993656:5305188..5305301Branchiostoma lanceolatumexon
BlTCONS00008155-exon-Sc0000002-1564993656:5304279..5304455BlTCONS00008155-exon-Sc0000002-1564993656:5304279..5304455Branchiostoma lanceolatumexon
BlTCONS00008155-exon-Sc0000002-1564993656:5302543..5303448BlTCONS00008155-exon-Sc0000002-1564993656:5302543..5303448Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00008155BlTCONS00008155-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:5302543..5310301 -
Properties
Property NameValue
GeneIDBlCUFF004081