|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009939 ID=TCONS_00009939|Name=TCONS_00009939|organism=Clytia hemisphaerica|type=transcript|length=2396bpRun BLAST on NCBI protein sequence of TCONS_00009939-protein >TCONS_00009939-protein ID=TCONS_00009939-protein|Name=TCONS_00009939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp MSLPFLPGNTFADPTKTKYHRGQSLGYKNGYTMPKVSNNNPLTEDELNALRun BLAST on NCBI transcript from alignment at sc0000100:445974..471578- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009939 ID=TCONS_00009939|Name=TCONS_00009939|organism=Clytia hemisphaerica|type=transcript|length=25605bp|location=Sequence derived from alignment at sc0000100:445974..471578- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000100:445974..471578- >TCONS_00009939 ID=TCONS_00009939|Name=TCONS_00009939|organism=Clytia hemisphaerica|type=CDS|length=15093bp|location=Sequence derived from alignment at sc0000100:445974..471578- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00009939 vs. Swiss-Prot (Human)
Match: EFHC1 (EF-hand domain-containing protein 1 OS=Homo sapiens GN=EFHC1 PE=1 SV=1) HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0 Identity = 302/530 (56.98%), Postives = 381/530 (71.89%), Query Frame = 2
Query: 203 SLPFLPGNTFADPTKTKYHRGQSLGYKNGYTM---PKVSNN------NPLTEDELNALANHKPSLTYGQSAQAPPEDFIPAHVAFDKKVLLFFAYFKQTVHESPNEHYNVRPVKIYYYLEDDSIAVIEPIVENSGIPQGKLIKRQRLPKNDLGEHWHWKDLNININVTFYGKSFMIYDCNKWTKDYLISQGKVLNLQSDCPADPYTESRNQPLRTYKTPPEFDKLKQFLELDRKVLRFYCIWDDRDSMFGEIRPCVLHYYLVDDTMEIREVHTPNDGHDPFPVLIGRQRMPIDRNNVPASFPAISMEISEHEICDWFEPKHFQLGATVFIMGRRFLLYDCDTCTKDYYGVKFNVKEFPTIDVSEKFPDNVNKEIPPYNGFGSLEDSLQSCLSLVPQPPKKDFIKMLGNDNKVLRYEATLESMRSEDKLRRFIISYRLSDDMINVYEKAQRNSGIIGGKFLERTRVCKPGSQIDSPEFYTPADFSIGAVIEIFKHRFKITDVDEYVLKYLESFPGKFPLDTINSIRKKLGK 1765
LPFLPG +F D TKT +HR Q+L Y+NGY + P V N L++ EL+ LA+ P LTYGQ QAPP DFIPAHVAFDKKVL F AYF++ V S E Y +R V IYYYLEDDS++VIEP+VENSGI QGKLIKRQRL KND G+H+HWKDLN IN+T YGK+F + DC+++T+ +L SQG LN DPYTE R QPLR Y TP +FD+LKQFL D++VLRFY IWDD DSM+GE R ++HYYL+DDT+EIREVH NDG DPFP+L+ RQR+P +FP +EIS+ E+ +W+ K F +G ++ I+GR F +YDCD T+ YY KF + + P IDVS++ P V +E+PPYNGFG +EDS Q+C +L+P+ PKKD IKML NDNKVLRY A LES EDK RRF+ SY L+ DMI+++E RNSGIIGGK+L RT+V KP S +D+P +Y P+DF IGAVIE+F HRF I D DEYVLKY+ES ++ + + SI+ + K
Sbjct: 8 GLPFLPGTSFKDSTKTAFHRSQTLSYRNGYAIVRRPTVGIGGDRLQFNQLSQAELDELASKAPVLTYGQPKQAPPADFIPAHVAFDKKVLKFDAYFQEDVPMSTEEQYRIRQVNIYYYLEDDSMSVIEPVVENSGILQGKLIKRQRLAKNDRGDHYHWKDLNRGINITIYGKTFRVVDCDQFTQVFLESQGIELNPPEKMALDPYTELRKQPLRKYVTPSDFDQLKQFLTFDKQVLRFYAIWDDTDSMYGECRTYIIHYYLMDDTVEIREVHERNDGRDPFPLLMNRQRVPKVLVENAKNFPQCVLEISDQEVLEWYTAKDFIVGKSLTILGRTFFIYDCDPFTRRYYKEKFGITDLPRIDVSKREPPPVKQELPPYNGFGLVEDSAQNCFALIPKAPKKDVIKMLVNDNKVLRYLAVLESPIPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPYSTVDNPVYYGPSDFFIGAVIEVFGHRFIILDTDEYVLKYMESNAAQYSPEALASIQNHVRK 537 The following BLAST results are available for this feature:
BLAST of TCONS_00009939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.