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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009830 ID=TCONS_00009830|Name=TCONS_00009830|organism=Clytia hemisphaerica|type=transcript|length=2042bpRun BLAST on NCBI transcript from alignment at sc0000099:620138..625046+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009830 ID=TCONS_00009830|Name=TCONS_00009830|organism=Clytia hemisphaerica|type=transcript|length=4909bp|location=Sequence derived from alignment at sc0000099:620138..625046+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009830 vs. Swiss-Prot (Human)
Match: ZN112 (Zinc finger protein 112 OS=Homo sapiens GN=ZNF112 PE=1 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 1.251e-36 Identity = 109/356 (30.62%), Postives = 172/356 (48.31%), Query Frame = 1
Query: 802 TKNRCFKCYMCDRSFPTMAHLKMHQVLH--DMSIQCQKCIQHFKTKEMLDQHQCIRQQLDSKHPCHKCELKFESFVELQQHLKTHIVPKDFKTNSKTEVFICYLCGHHAFSKPEMRYHFRIHL--KRFECHVCGQYFTKSSELEKHSVIHSATQ-FTCRKCGKVLDSEPAFLIHLDIHADEAAFKFECSVCGKRFHVLSNLESHLKVHAAEKTYKCDVLGQGLNQTYRVKEHTKLVHSKPRQYKCTVCGQKFDQASRVKEHIASVHSKPRQYKCSVCEQGFDQ-AXXXXXXXXXXXXXPRHYHECNVCGEKFNTRSRLDRHLKAHKS-----CSVC-KLKVHSEQFVSHMKTHTTD 1833
T + +KC CD+ F ++L+ HQ +H + +C++C + F L HQ + + + C +C F LQ H + H K FK C CG ++ H R+H K ++C CG+ F+K+S L H +H+ + + C +CGK H +H+ E + C VCGK F + L+ H +VH K YKC++ G+G +Q+ R++ H + VH+ + YKC VC + F ++SR++ H VH + R YKC C +GF +S H KP ++C VCG+ F+ RS L H + H C C K S + H + H++D
Sbjct: 548 TGEKPYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTG-EKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFK---------CEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVHSGERPYI--CEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHRR-VHTGGKPYKCEVCTKGFSESSRLQAH-QRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKP---YKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQRVHSSD 886 HSP 2 Score: 121.709 bits (304), Expect = 1.984e-28 Identity = 83/273 (30.40%), Postives = 134/273 (49.08%), Query Frame = 1
Query: 802 TKNRCFKCYMCDRSFPTMAHLKMHQVLH--DMSIQCQKCIQHFKTKEMLDQHQCIRQQLDSKHPCHKCELKFESFVELQQHLKTHIVPKDFKTNSKTEVFICYLCGHHAFSKPEMRYHFRIH--LKRFECHVCGQYFTKSSELEKHSVIHSATQ-FTCRKCGKVLDSEPAFLIHLDIHADEAAFKFECSVCGKRFHVLSNLESHLKVHAAEKTYKCDVLGQGLNQTYRVKEHTKLVHSKPRQYKCTVCGQKFDQASRVKEHIASVHSKPRQYK 1605
T + FKC C + F +L++HQ +H + +C++C + F L HQ + + + C +C F LQ H H S +IC +CG + ++ H R+H +K ++C +CG+ F++SS LE H +H+ + + C C K H +H + +K C CGK F S+L++H +VH EK YKC+V G+G +Q ++ H + VH+ + YKC CG+ F +S + H VHS + YK
Sbjct: 632 TGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTG-EKPYQCDECGKSFSQRSYLQSHQSVH---------SGERPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHRRVHTGGKPYKCEVCTKGFSESSRLQAHQRVHVEGRPYK--CEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQR-VHTGEKPYKCDACGKGFRWSSGLLIH-QRVHSSDKFYK 890 HSP 3 Score: 111.694 bits (278), Expect = 2.815e-25 Identity = 93/331 (28.10%), Postives = 144/331 (43.50%), Query Frame = 1
Query: 997 CELKFESFVELQQHLKTHIVPK-------DFKTNSK----------TEVFICYLCGHHAFSKPEMRYHFRIHL--KRFECHVCGQYFTKSSELEKHSVIHSATQ-FTCRKCGKVLDSEPAFLIHLDIHADEAAFKFECSVCGKRFHVLSNLESHLKVHAAEKTYKCDVLGQGLNQTYRVKEHTKL---------------------------VHSKPRQYKCTVCGQKFDQASRVKEHIASVHSKPRQYKCSVCEQGFDQ-AXXXXXXXXXXXXXPRHYHECNVCGEKFNTRSRLDRHLKAHKS-----CSVC-KLKVHSEQFVSHMKTHT 1827
C F + LQ H K HI K F +SK + + C +CG + + H R+H K ++C C + F++SS L+ H +H+ + + C +CGK H +H E +K C CGK F S+L+ H +VH EK +KC+ G+G + ++ ++ H ++ VH+ + Y+C CG+ F Q S ++ H SVHS R Y C VC +GF Q A KP ++C +CG+ F+ SRL+ H + H C VC K S + +H + H
Sbjct: 476 CSNSFSHNLYLQGHPKIHIGEKPRKEHGNGFNWSSKLKDHQRVHTGQKPYKCNICGKGFNHRSVLNVHQRVHTGEKPYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYK--CEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSH-QSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTRVKP---YKCEMCGKGFSQSSRLEAHRRVHTGGKPYKCEVCTKGFSESSRLQAHQRVHV 800 HSP 4 Score: 83.9593 bits (206), Expect = 1.397e-16 Identity = 58/221 (26.24%), Postives = 100/221 (45.25%), Query Frame = 1
Query: 802 TKNRCFKCYMCDRSFPTMAHLKMHQVLH--DMSIQCQKCIQHFKTKEMLDQHQCIRQQLDSKHPCHKCELKFESFVELQQHLKTHIVPKDFKTNSKTEVFICYLCGHHAFSKPEMRYHFRIHL--KRFECHVCGQYFTKSSELEKHSVIHSATQ-FTCRKCGKVLDSEPAFLIHLDIHADEAAFKFECSVCGKRFHVLSNLESHLKVHAAEKTYKCDVLGQ 1449
T + ++C C +SF ++L+ HQ +H + C+ C + F + L HQ + ++ + C C F L+ H + H K +K C +C ++ H R+H+ + ++C CG+ F+ S L+ H +H+ + + C CGK H +H E +K C CGK F S L H +VH+++K YK + G+
Sbjct: 688 TGEKPYQCDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTRVKP-YKCEMCGKGFSQSSRLEAHRRVHTGGKPYK---------CEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYK--CDACGKGFRWSSGLLIHQRVHSSDKFYKSEDYGK 896 The following BLAST results are available for this feature:
BLAST of TCONS_00009830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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