TCONS_00001273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001273
Unique NameTCONS_00001273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001273 ID=TCONS_00001273|Name=TCONS_00001273|organism=Clytia hemisphaerica|type=transcript|length=464bp
AAACAATATTGAGTGTAAACCCTGCGTTTATTTTGGATCTCCTTTTGCCC
TCAATTTTACGCTTTACTTCATGTATTTTAACTCCCAAAGAGCTTGTCAG
ACCCAAAAAAAAATGTGAGGATTTCGAAGCCGGTATAATGCTTTCTCTTC
ATAGGGCATCCTAAGTATTTTCAATTCATTCCTTGATTTCTTGTTGGTAA
AATATCACAATGCGTGTCATACTCATGGCGGAAGGCACGTGAAATTGGGC
GCCAATATCAATCAGGAGTGCTTTCTCAAGTACAGAATGTAATGTGGAAC
TAGACAAACACAATTTAAGCGTATGTCTTGCGCTGTCTGTTATTTTGACT
GGATTTATTCCACTTGTGTAAGAACACGAGATGATGACTTAACCATAATT
TCCACTAACAAACTATTCAACTAAATAAATTGGCAAGAACATTTCATATT
TGAGTGATAATGTA
Run BLAST on NCBI

transcript from alignment at sc0000007:119808..120271

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001273 ID=TCONS_00001273|Name=TCONS_00001273|organism=Clytia hemisphaerica|type=transcript|length=464bp|location=Sequence derived from alignment at sc0000007:119808..120271 (Clytia hemisphaerica)
TACATTATCACTCAAATATGAAATGTTCTTGCCAATTTATTTAGTTGAAT
AGTTTGTTAGTGGAAATTATGGTTAAGTCATCATCTCGTGTTCTTACACA
AGTGGAATAAATCCAGTCAAAATAACAGACAGCGCAAGACATACGCTTAA
ATTGTGTTTGTCTAGTTCCACATTACATTCTGTACTTGAGAAAGCACTCC
TGATTGATATTGGCGCCCAATTTCACGTGCCTTCCGCCATGAGTATGACA
CGCATTGTGATATTTTACCAACAAGAAATCAAGGAATGAATTGAAAATAC
TTAGGATGCCCTATGAAGAGAAAGCATTATACCGGCTTCGAAATCCTCAC
ATTTTTTTTTGGGTCTGACAAGCTCTTTGGGAGTTAAAATACATGAAGTA
AAGCGTAAAATTGAGGGCAAAAGGAGATCCAAAATAAACGCAGGGTTTAC
ACTCAATATTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000677XLOC_000677Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001273-exon-sc0000007-1491911889:119808..120271TCONS_00001273-exon-sc0000007-1491911889:119808..120271Clytia hemisphaericaexon
TCONS_00001273-exon-sc0000007-1510915933:119808..120271TCONS_00001273-exon-sc0000007-1510915933:119808..120271Clytia hemisphaericaexon
TCONS_00001273-exon-sc0000007-1575043694:119808..120271TCONS_00001273-exon-sc0000007-1575043694:119808..120271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:119808..120271 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.278257	0.407016	1.26023	1.38705	0.187622	0	0	0	0	0.145222	0.140956	0	0	0	0.237005	0.169562	0	0.107051	0.295793	0	0.134517	0	0.159522	0	0.298752	0.133315	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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