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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009856 ID=TCONS_00009856|Name=TCONS_00009856|organism=Clytia hemisphaerica|type=transcript|length=832bp CGAGATGTAATGGTTATTGGGGCAAAAGTCAATAGGCTGAGGGCTTTTTG ACTTTCGACAAAATCTTTTATCGTTTTCTTATTACTGAAAAGGGTTATTC TCAAGAATTTTCTTGACTTTGGCCTAACTTTCACGCATAAACGATGATTT ACAATAAACTTTTTGAATAGAAACTGATTTCTGATAAAGGGTTGACATCA GCTGTGCGTTAGATTGAATCCTTGGATGTAGCTTGGATGCTTTTAATACG TTCAAACGCATGTTTTTTGGAACATAGCGGCTCTCATTAAAACTTTAATT TCAGCTATCAAacaacttgtaaaaaaaaatgtgttacGTACCAAAGCGAT ACGTTTTATCTGGACTGATCCACTTTGCTACATTCTGTTTATACTCACTT CGAGTTAATCTGAGTGTGGCCATAGTATCCATGGTCAACCAGACATATGC AAATGCGAAAAAGACTTCTCTTATAGAATGTGGAACAGGGAATACCACAA TAGCAATAACACAGgagGATGGCGAGTTCTTATGGGATCAGAACCGACAA GGTCTAATCCTTGGAGCCTTTTTCTATGGTTACTTGATTACACAAGTTCC TGGAGGGTGGTTGGCCAATCGTTATGGCGGTAAATGGGTGTATGCAGTTG GCATGCTGTTTTGTAATATCATGACCGCCCTCACGCCTGTGGCGGCACGA ACATCGTATATGTTTCTTATTGCAGCGCGTGTTATCGAAGGTCTAGGTCA GGTAAGGAATCATcacattttgttttttcatatcAAATCAAATGATGTTT TCTACAATTATTTTCAACAGTCTAGTTTAGAC Run BLAST on NCBI protein sequence of TCONS_00009856-protein >TCONS_00009856-protein ID=TCONS_00009856-protein|Name=TCONS_00009856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MCYVPKRYVLSGLIHFATFCLYSLRVNLSVAIVSMVNQTYANAKKTSLIE CGTGNTTIAITQEDGEFLWDQNRQGLILGAFFYGYLITQVPGGWLANRYG GKWVYAVGMLFCNIMTALTPVAARTSYMFLIAARVIEGLGQVRNHHILFF HIKSNDVFYNYFQQSSLD Run BLAST on NCBI transcript from alignment at sc0000099:423339..425365- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009856 ID=TCONS_00009856|Name=TCONS_00009856|organism=Clytia hemisphaerica|type=transcript|length=2027bp|location=Sequence derived from alignment at sc0000099:423339..425365- (Clytia hemisphaerica) CGAGATGTAATGGTTATTGGGGCAAAAGTCAATAGGCTGAGGGCTTTTTG
ACTTTCGACAAAATCTTTTATCGTTTTCTTATTACTGAAAAGGGTTATTC
TCAAGAATTTTCTTGACTTTGGCCTAACTTTCACGCATAAACGATGATTT
ACAATAAACTTTTTGAATAGAAACTGATTTCTGATAAAGGGTTGACATCA
GCTGTGCGTTAGATTGAATCCTTGGATGTAGCTTGGATGCTTTTAATACG
TTCAAACGCATGTTTTTTGGAACATAGCGGCTCTCATTAAAACTTTAATT
TCAGCTATCAAACAACTTGTAAAAAAAAATGTGTTACGTACCAAAGCGAT
ACGTTTTATCTGGACTGATCCACTTTGCTACATTCTGTTTATACTCACTT
CGAGTTAATCTGAGTGTGGCCATAGTATCCATGGTCAACCAGACATATGC
AAATGCGAAAAAGACTTCTCTTATAGAATGTGGAACAGGGAATACCACAA
TAGCAATAACACAGGTTAGAGATGTACCAATGAATTTAAAGTACGAAGTG
CTAGAGAGGAAAAGCAACGCTTACCTCGTTTTCAAAATATTGATATGGTA
ATTAATTCCCAGGGGAGTTCATAAAAAGTTCACTCTATATTCATAAAAGT
TTGGCTTGAAGACTGAAGGAATTTAATCACCTTGGCAATTGTTTCAAAAC
GAGGCAGTCGTTGCACTCAAAATAATTTATGAGACCTATCAGCCTTTTTC
AAGCAAGAAAAGAGTAAAGCCTCGAGATTCATGCCGCTTTTGAATGACGG
ATGAAATCTGCTAGCACTTTCTTTCTTCTTAATTGACTTTATTTTCGAAA
ACTGGTAATATGTTATATTCAATCTGGTATTTGTGAAAAGCCACGCGGTG
CACGCGTATTTAGTTGGGAAATAAGTAGCTTCATATTCCATCCAACAGCT
TCAATTCTTACCCCTTCGGGGTTATAAATTTCAACTTTCTAAACTTTTGT
CAAGTCGTATTTGATAGATAAGCAAGGAAATATTAGATTTTAGCAATTTC
GGAATCCTCAAAGAGACTATTATTGATTTTGATGGTTTTCAAGGATATGG
AAAAGAAACCCCTTTGGTTCGTTCCATATACCGCATCCATTTTGCTTAAA
AAAGGCCCATTTCCAGTGAGCCCGGACCCAATTTCAACTGACAGAATTCT
ATCTTCATTTTTCAGGAGGATGGCGAGTTCTTATGGGATCAGAACCGACA
AGGTGAGATTTTTAGATCTTAAAAAATCATTTTTCGACATAAAAATTCAT
TCATAGTTATCCTCTTACAGAGGATTATTTTTAGTGATGAAATTTTTAAC
GAGAAAAAATGAATCCGCCTGAAGGGGAGAGGAATTTTTGCAGAAAGAAA
TTTTAGTGAATTTGACGAGTTTACTTACAGTAAAAAATTGTCCGAATTCG
CCAAAATTTCTTCCCGCCAAAATTGAAATCTAGGGTATTCGCCAAAATCA
ATTCTCGCCAAATTTAGAAATTTTCTTAAACAGCCAAAGTAAATTCCGCT
AAAGTGCACCGAAATTGGCGAATGAGCCCATTCGCCAAAATTCTTCTTGT
CAAGATTATTTCTCTTCGTGTTTACAGGAGAAAAAAAATGAATTTTAGAT
TATTGAGAAAATCAGCGTGGTTCTAACTAAACTAAATCTGTTTAAAATAG
TTATTGCTATTGTTTTGATTATATTGTTATATCTTGTTTATCTTAGGTCT
AATCCTTGGAGCCTTTTTCTATGGTTACTTGATTACACAAGTTCCTGGAG
GGTGGTTGGCCAATCGTTATGGCGGTAAATGGGTGTATGCAGTTGGCATG
CTGTTTTGTAATATCATGACCGCCCTCACGCCTGTGGCGGCACGAACATC
GTATATGTTTCTTATTGCAGCGCGTGTTATCGAAGGTCTAGGTCAGGTAA
GGAATCATCACATTTTGTTTTTTCATATCAAATCAAATGATGTTTTCTAC
AATTATTTTCAACAGTCTAGTTTAGAC Coding sequence (CDS) from alignment at sc0000099:423339..425365- >TCONS_00009856 ID=TCONS_00009856|Name=TCONS_00009856|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0000099:423339..425365- (Clytia hemisphaerica) GTCTAATCCTTGGAGCCTTTTTCTATGGTTACTTGATTACACAAGTTCCT GGAGGGTGGTTGGCCAATCGTTATGGCGGTAAATGGGTGTATGCAGTTGG CATGCTGTTTTGTAATATCATGACCGCCCTCACGCCTGTGGCGGCACGAA CATCGTATATGTTTCTTATTGCAGCGCGTGTTATCGAAGGTCTAGGTCAG GTAAGGAATCATCACATTTTGTTTTTTCATATCAAATCAAATGATGTTTT CTACAATTATTTTCAACAGTCTAGTTTAGACGAGGATGGCGAGTTCTTAT GGGATCAGAACCGACAAGATGTGTTACGTACCAAAGCGATACGTTTTATC TGGACTGATCCACTTTGCTACATTCTGTTTATACTCACTTCGAGTTAATC TGAGTGTGGCCATAGTATCCATGGTCAACCAGACATATGCAAATGCGAAA AAGACTTCTCTTATAGAATGTGGAACAGGGAATACCACAATAGCAATAAC ACAGGTCTAATCCTTGGAGCCTTTTTCTATGGTTACTTGATTACACAAGT TCCTGGAGGGTGGTTGGCCAATCGTTATGGCGGTAAATGGGTGTATGCAG TTGGCATGCTGTTTTGTAATATCATGACCGCCCTCACGCCTGTGGCGGCA CGAACATCGTATATGTTTCTTATTGCAGCGCGTGTTATCGAAGGTCTAGG TCAGGTAAGGAATCATCACATTTTGTTTTTTCATATCAAATCAAATGATG TTTTCTACAATTATTTTCAACAGTCTAGTTTAGACGAGGATGGCGAGTTC TTATGGGATCAGAACCGACAAGATGTGTTACGTACCAAAGCGATACGTTT TATCTGGACTGATCCACTTTGCTACATTCTGTTTATACTCACTTCGAGTT AATCTGAGTGTGGCCATAGTATCCATGGTCAACCAGACATATGCAAATGC GAAAAAGACTTCTCTTATAGAATGTGGAACAGGGAATACCACAATAGCAA TAACACAGGTCTAATCCTTGGAGCCTTTTTCTATGGTTACTTGATTACAC AAGTTCCTGGAGGGTGGTTGGCCAATCGTTATGGCGGTAAATGGGTGTAT GCAGTTGGCATGCTGTTTTGTAATATCATGACCGCCCTCACGCCTGTGGC GGCACGAACATCGTATATGTTTCTTATTGCAGCGCGTGTTATCGAAGGTC TAGGTCAGGTAAGGAATCATCACATTTTGTTTTTTCATATCAAATCAAAT GATGTTTTCTACAATTATTTTCAACAGTCTAGTTTAGACGAGGATGGCGA GTTCTTATGGGATCAGAACCGACAAGATGTGTTACGTACCAAAGCGATAC GTTTTATCTGGACTGATCCACTTTGCTACATTCTGTTTATACTCACTTCG AGTTAATCTGAGTGTGGCCATAGTATCCATGGTCAACCAGACATATGCAA ATGCGAAAAAGACTTCTCTTATAGAATGTGGAACAGGGAATACCACAATA GCAATAACACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009856-exon-sc0000099-1575043694:424852..425365 | TCONS_00009856-exon-sc0000099-1575043694:424852..425365 | Clytia hemisphaerica | exon |
TCONS_00009856-exon-sc0000099-1575043694:424114..424150 | TCONS_00009856-exon-sc0000099-1575043694:424114..424150 | Clytia hemisphaerica | exon |
TCONS_00009856-exon-sc0000099-1575043694:423339..423619 | TCONS_00009856-exon-sc0000099-1575043694:423339..423619 | Clytia hemisphaerica | exon |
TCONS_00009856-exon-sc0000099-1510915933:424852..425365 | TCONS_00009856-exon-sc0000099-1510915933:424852..425365 | Clytia hemisphaerica | exon |
TCONS_00009856-exon-sc0000099-1510915933:424114..424150 | TCONS_00009856-exon-sc0000099-1510915933:424114..424150 | Clytia hemisphaerica | exon |
TCONS_00009856-exon-sc0000099-1510915933:423339..423619 | TCONS_00009856-exon-sc0000099-1510915933:423339..423619 | Clytia hemisphaerica | exon |
TCONS_00009856-exon-sc0000099-1491911889:424852..425365 | TCONS_00009856-exon-sc0000099-1491911889:424852..425365 | Clytia hemisphaerica | exon |
TCONS_00009856-exon-sc0000099-1491911889:424114..424150 | TCONS_00009856-exon-sc0000099-1491911889:424114..424150 | Clytia hemisphaerica | exon |
TCONS_00009856-exon-sc0000099-1491911889:423339..423619 | TCONS_00009856-exon-sc0000099-1491911889:423339..423619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000099 | supercontig | sc0000099:423339..425365 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055085 |
transmembrane transport |
cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00009856 vs. Swiss-Prot (Human)
Match: S17A5 (Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 8.844e-26 Identity = 57/137 (41.61%), Postives = 81/137 (59.12%), Query Frame = 2
Query: 347 RYVLSGLIHFATFCLYSLRVNLSVAIVSMVNQTYANAKKTSLIECGTGNTTIAI--TQEDGEFLWDQNRQGLILGAFFYGYLITQVPGGWLANRYGGKWVYAVGMLFCNIMTALTPVAARTSYMFLIAARVIEGLGQ 751
RY L+ L F F +Y+LRVNLSVA+V MV+ + C + I + Q ++ WD QG ILG+FFYGY+ITQ+PGG++A++ GGK + G+L ++T TP+AA LI R +EGLG+
Sbjct: 39 RYNLAILAFFGFFIVYALRVNLSVALVDMVDSNTTLEDNRTSKACPEHSAPIKVHHNQTGKKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGLGE 175
The following BLAST results are available for this feature:
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