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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009758 ID=TCONS_00009758|Name=TCONS_00009758|organism=Clytia hemisphaerica|type=transcript|length=3332bpRun BLAST on NCBI protein sequence of TCONS_00009758-protein >TCONS_00009758-protein ID=TCONS_00009758-protein|Name=TCONS_00009758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=755bp MIHQIFNLSFLFFPMQHKFTSLEFVEFKKVEFKERIFLLHTQLIFIEISDRun BLAST on NCBI transcript from alignment at sc0000098:636262..649694- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009758 ID=TCONS_00009758|Name=TCONS_00009758|organism=Clytia hemisphaerica|type=transcript|length=13433bp|location=Sequence derived from alignment at sc0000098:636262..649694- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000098:636262..649694- >TCONS_00009758 ID=TCONS_00009758|Name=TCONS_00009758|organism=Clytia hemisphaerica|type=CDS|length=27216bp|location=Sequence derived from alignment at sc0000098:636262..649694- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009758 vs. Swiss-Prot (Human)
Match: MET13 (Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1) HSP 1 Score: 398.667 bits (1023), Expect = 1.428e-123 Identity = 232/658 (35.26%), Postives = 372/658 (56.53%), Query Frame = 1 Query: 445 ISLLPKAAAEFNSKKYWEDFFKKR-QQSFEWYCEYSLLSEVIYKYCDRQNKILIPGCGNSRLSESLFDAGYNSLINIDISDVVIKSMIKRNKSARAKMKFLLMDIKKLSFGDCEFDTILDKGTLDAIYTDDQQ--INDVRAYFSESVRVLKSGGRFLIVSLAQQHILQELMQYFVM-GFSIHIHGIKQDGSGDIGSK----LPVFIFIITKLSEKSQRSV---EFSMGDVNKPQMCKDNEHAISLVKEQQDYVMVMDRLAKSKLDDILSIELWGDNETNNNSQDPRYTLTLVDGDMV----NGFYGVFIVPEGRETEWQFSSENGRRELAEVIGYKRLAIASLHRGHTYENIDQIKEELSQKVLDVAPPGMPNKYKVPFMSAGESTGYRKVQFDGKTNLSGSVVIQDVQNEDQTYTRQLIFSQMNKVVQSETRIINDPSXXXXX-----------XXXDRVP-------DSSYLLWDIYKAMLVAFHFIPNVNLTSQDETLDVLLIGVGGAALPSFISKTFEKIRMTCVELDGELLDLAKTWFGAEETEAVQYVTQDGLQFIQEKVDQAQ-QDIYDVIIFDVGGLDDG-RIFVPPKAFIEEGVLKNTRTLLKEKGALLINTNPSRVDNNEEMISIIKRFHSNVYRFDLPNSSNKPIVC 2313
++LLPK++ EF S YWE FF++R +++FEWY Y L V++KY + K+L+ GCGNS LSE L+D GY ++NIDIS+VVIK M + N + R +M FL MD+ ++ F D F +LDKGTLDA+ TD+++ + V +E RVL+ GGR+L +SLAQ HIL++ + +F G+ + +H + + ++ LPVF FI+TK ++ E + KP + E V+E+Q Y + +L + +S++L + ++ +PRYTL +VD V + + +FI+P+GRETEW F + GR++LA G++RL +LHRG YE++D I+ ELS +V+++AP GMP + +VPF+S G G R VQ + LSG VI+DVQ +D+ Y R+LIF VVQSE R++ D S K +K + + +P D SYL + +KAM+ + N L + L +L++G+GG +LP F+ F K + VE+D +L++A WFG +++ ++ DGL +I + + YDVI+FDV D + PP AF+E+ L+ +++L +G ++N + + +++ +K +Y + N+ + C
Sbjct: 1 MNLLPKSSREFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVIGCGNSELSEQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQMEFPDASFQVVLDKGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAHILKKAVGHFSREGWMVRVHQVANSQDQVLEAEPQFSLPVFAFIMTKFRPVPGSALQIFELCAQEQRKPVRLESAERLAEAVQERQQYAWLCSQLRRKARLGSVSLDL-----CDGDTGEPRYTLHVVDSPTVKPSRDNHFAIFIIPQGRETEWLFGMDEGRKQLAASAGFRRLITVALHRGQQYESMDHIQAELSARVMELAPAGMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDVQGDDKRYFRRLIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPAAPGQSIDKSYLCCEHHKAMIAGLALLRNPELLLE-IPLALLVVGLGGGSLPLFVHDHFPKSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYIASLAGGGEARPCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEILFC 652 The following BLAST results are available for this feature:
BLAST of TCONS_00009758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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TCONS_00009758 (transcript) - C. hemisphaerica
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Overview
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