TCONS_00009767 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009767
Unique Name	TCONS_00009767
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	589

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000098:185839..186427

transcript sequence

>TCONS_00009767 ID=TCONS_00009767|Name=TCONS_00009767|organism=Clytia hemisphaerica|type=transcript|length=589bp
GAAAATAAATTGTCAGTTAGATAAGCATGTTCGTTGGCTAGCCATTTTCA
GAAATGGAAGATTTCATCTCTCTATCAAATTATCGACCTCACTTTTGCTT
CAAATGTCTTCCAATAGTAAACCAATTGACGCAGAATTTTACATAGATTC
caaaaaagtagcaaaaaagcAAGCTAAAGTTTCTGTATCTAAAGTATGGC
CCTTTGAAGTACTGCCCGTATTTTGACCTCACGactacgagtatactcgt
agtTGGCAGCGAACTTGTTAAAGTGAGAAAAACAGTGTGTAAAATAACAT
AGAAGATAAGTTCTTATAAGTAAAGGATTTTTTGGTCATGTACGAATTTA
TAACTTAAGCCTGTTACGTCACTTTCATTTAAAACCTAGGAAGGTATTTT
TACAATTCAAACGAAAAACCATATGACTGTACTGATTGTCCAATTGTGTC
CGAATTTCTGTCCAGATTTTTTCTAACTGTATTTCGGACAGAGAATTTAG
GCCGTTACTGTGAAATTGGACTTGAATGTAACACTGTTCCCATCAGCTTG
AAATTTATGAACAGAATTCTGTAAACATATAAACCCTAC

Run BLAST on NCBI

transcript from alignment at sc0000098:185839..186427

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009767 ID=TCONS_00009767|Name=TCONS_00009767|organism=Clytia hemisphaerica|type=transcript|length=589bp|location=Sequence derived from alignment at sc0000098:185839..186427 (Clytia hemisphaerica)
GTAGGGTTTATATGTTTACAGAATTCTGTTCATAAATTTCAAGCTGATGG
GAACAGTGTTACATTCAAGTCCAATTTCACAGTAACGGCCTAAATTCTCT
GTCCGAAATACAGTTAGAAAAAATCTGGACAGAAATTCGGACACAATTGG
ACAATCAGTACAGTCATATGGTTTTTCGTTTGAATTGTAAAAATACCTTC
CTAGGTTTTAAATGAAAGTGACGTAACAGGCTTAAGTTATAAATTCGTAC
ATGACCAAAAAATCCTTTACTTATAAGAACTTATCTTCTATGTTATTTTA
CACACTGTTTTTCTCACTTTAACAAGTTCGCTGCCAactacgagtatact
cgtagtCGTGAGGTCAAAATACGGGCAGTACTTCAAAGGGCCATACTTTA
GATACAGAAACTTTAGCTTgcttttttgctacttttttgGAATCTATGTA
AAATTCTGCGTCAATTGGTTTACTATTGGAAGACATTTGAAGCAAAAGTG
AGGTCGATAATTTGATAGAGAGATGAAATCTTCCATTTCTGAAAATGGCT
AGCCAACGAACATGCTTATCTAACTGACAATTTATTTTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005458	XLOC_005458	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009767-exon-sc0000098-1491911889:185839..186427	TCONS_00009767-exon-sc0000098-1491911889:185839..186427	Clytia hemisphaerica	exon
TCONS_00009767-exon-sc0000098-1510915933:185839..186427	TCONS_00009767-exon-sc0000098-1510915933:185839..186427	Clytia hemisphaerica	exon
TCONS_00009767-exon-sc0000098-1575043694:185839..186427	TCONS_00009767-exon-sc0000098-1575043694:185839..186427	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000098	supercontig	sc0000098:185839..186427 .

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.176075	0.386674	4.50914e-05	0	0	0	0	0	0	0	0.257152	0.717728	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00009767 vs. Swiss-Prot (Human)

BLAST of TCONS_00009767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00009767 (transcript) - C. hemisphaerica