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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009599 ID=TCONS_00009599|Name=TCONS_00009599|organism=Clytia hemisphaerica|type=transcript|length=1813bp
TGAATTTGAAAAGAGACTCAACAACAATTTACTGAAGAGACTGTCACAAT
ATGTAACATAATTTGCTTCAAAAATACAAGGGGGCGATCATCTTCCTGTT
TGTCATCCTATTTATAACAATCTTGCTGGTCACACTATACCTTATGTTAA
AGAAAGGcttctgttgttgttgttgcaacAAAGAGAAAGAGGACGAAGAG
AGTCTTTACACTGACCTCGAGCATGATGAAGAAGACGATGAGATGGAGGG
TCATATCCCTCCTCCAAAAGGTGAACTTCTCCACAGCGGTGAACATCACT
TAGAACCCGAAGAACGTGCCGTAGAGGAGCAGGAACATCACATTCCGGAG
ATCATCGTCACCGAAGGTCATTTCGTCCCTGAGAAGAAGAGCAAGAAAAA
ACAACTGTCCGGTATGTTGAAACGAATGCGACCGGGCAAAGGAAAAGTCC
GATTTAGCCCGTCTAGTGAACAGATCAGCATGATAAGTTCAGAAGGTAGC
ACCATTACCAGCGATTACGGATCGACCACGAATTCCTTACCTATTCACAG
ATCAGATTCTATGGAGAGTTTCATGTCGGCTGTTTCGGCCGCTACAACGA
ACAATATCGATGAGTTTGGAGATGAACTTTCTCCGAGTCGTTTGCAAGTT
TTTTTACATTATGATCCGAAATTATGGACTTTGACAGTAGGTGTCAAGCA
AGCTGATTGCTTAGTATCGACCACAGGTAGTGCCATGTATTGGCAAGCAC
ATGTAACAATATTACCCTTTAAAAAACATAGATTCAAAACGAAGTATAAG
TCGACATCGACACCAATTTTTAATCAGAACTATGAAGTAGAAAACATCGC
GCAACAAGCCCTCTCACAGCTTTCCGTTCGTTATCGGATCTACGGCCGTC
CAGGGCGAGGTGGGCGTAAAAAGCTGGCGGGAGAAACAGAAGTTGAACTT
TCACATATAACCCAGATGGAGGATATGATAATAAAGGACTGGCGTGTTTT
GAGGCGTAAAGGTGGACCTTTCATCCGCCATGAAAGTGAAGTTTAGATGT
TTAttttaaattcttatttttgggAGGGCTATAGTggtatatattttatt
ttctagttttatttttctcgtgttgttttttattaatgacattttttgAA
GGCTTAGTGTAAAGGGCTCTGTCCAGAGAGGAACCAGCTTCTAATTTGCA
ACGAAAAATTTTTCTATTCAGATATATTAATGATTACTCAAACTGACTCG
GTGAACtctgaagaaaaattaaaaggagCTGCATAAAGATGAATCTccct
cttttttataaaaattactcATTTTTAATGGGTTATTCACTGTTATGTTC
tattgtattttaatttttttacattttaatttaCAACTTGGGGTATTTTA
AGTGAAAAGTACATGGCAAATATGGAGAGATCACTTTACTTAGTCAGAGC
CCGGAGAACTGGCATAATTTTATAGTAAAGACAGAGACTTAAGGGGAAGC
ACAATTTTgacgttttgatttttgaattcagACTTTATCTTTTGTTCTCT
GATCAGAGACTAGAACAATTATATCATTCTATCAAAGTTTCCAAACCTGA
AGCTTTTACCTGTCGATGTAGAATAATTGGTAGTAGTATTCTTGTTAGAT
TTTTTAGTAGCTAAATTAagggagatattttcgtgtttttctaaccaaca
ttttctttttttaattcatttttataTGTCATCATCCATACTTGTAAAAA
TAAACCATTAATAGTCTACTACGATAATTACACACTACATATGCAGCAAT
Cgtaattcaaaaa Run BLAST on NCBI transcript from alignment at sc0000097:530925..537323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009599 ID=TCONS_00009599|Name=TCONS_00009599|organism=Clytia hemisphaerica|type=transcript|length=6399bp|location=Sequence derived from alignment at sc0000097:530925..537323+ (Clytia hemisphaerica)
TGAATTTGAAAAGAGACTCAACAACAATTTACTGAAGAGACTGTCACAAT
ATGTAACATAGTAAGTATGCACGATATGACTGTAAAAAGAATTGAGCAAT
AAATGATAGCTTCTTGTAATCTTTTATACTTCAAAACCTTACCATATTCC
AAGCTTGCTATTTGAATGATTCTTATACAGTATATATTGATAAAGATCTT
AAGAGATGGTATtacaaaatgacttattttgaaacaaaagttttttttaa
agcagAGTATAAATTCCTGTATTTCTGTAAATTCAGTTGTAactatttga
aagttttttaaaaattgatttcagCAATACATattcaaaaatgaaagaga
gtaagtatataatattatatttttcagtctttttttttgttttttttgag
gATTGGATTGAATGACCATTTAATCATAACTTGctattgcaatttttttc
tcagCAAGGTTTCTTCACGCTTAAGTTAAGGCAGAATATTGCTATACCCT
GTATTTATGCTTTAAAGTCATCATCTGCTATATGTGAAACTTTTTCTAAT
CCATCTATctatttatctatctatctatctatttatctatttatttttta
aagtatcATAAGATGCAATCTCATACTCGCCAAAAAGGCCCATACTGTAA
aacatactctcgggtacctaatagccggggggtttggaataagcgggggg
gggttgggaaaaatctcaaaacttaataggcggggggttggaataaaaat
gtcctgggtggaaaattttcgaaaaattaattagcgggaggacggctatt
aggtacccgagagtatttgTGACCCTCTAAGCATTGTCAATTTACCCTTT
TAATCTAATAATATGTTATTCCAATAAGGGAATTCTTGATAAACATGTTT
AACAATTAAATATAACTGCATGCCCCCTTTAAAGTTGTGAAAATATTCTG
GGAAgttctttaaacttttaaaatcagcaaatcttGTGAGAAAAGTAATT
CCAACAAAGTACCTAGTCTGTACTCTGTTTCTATCCTCCCTTATGAGCTT
TATGtgttaaaaaactttcaaaggcCTTTGAACTTATGATGAAATACTTT
TTCATTGTGTTTAGTTTAGAAAACAAAATACCGTGTTGGTCTAAATAAGA
TATTGTTCctggaaaaagaaagaaaacttcATTTCTGTCTTTACCAATAT
CCCTTATTATTAAAAAACTTATTTTGTTAATGagatctgaaagaaaaatt
aaaataaagccCAAAACACTGCCCGAACTGTGTATTTCCAGAAAATAGTT
CATAGTGAGCACAGTAGACTTCATTTTCTTCATGTAACTTTCTGAGAATA
TTGGATATTAAAAAGCTAAAATTATTTTACTCACTAAGTTCTTGAGTTCT
TGCTTGTCAAAACTCCTAAAAAAACTAAATAGTATTAAAAATTGTATTCC
TCTATAAGCTTTTTAAAATATCATCTTTCTTCCAAACGCCTTTCTTCAAG
TCCAATAAAAAAGGGTTTATTTCTCATCATATCCTATAATATGTATAATA
TGATCCAAGTATTGACATCCTACCTCCTTGTTATAACTACAGTAGATAAT
TAATAAACAAAACTCCACCTTGAATTGAGGTAAAGAATGATAATTTCAAT
AATCATGATGATAAACTGATTATGAGACCACTCTAAAAACATGAGCATGA
GTCTGTTTGAGATGTCTAGTCTTATTGAATAATCATCAATGTCATAAACa
gtatataaaaacaaaaagattatgtGATAGTTTCTATTATTACATTTTGA
ACTGTCTTCCCTTTTAGAATCAGTGTTTGAAACTAGAATGACACTGTTAC
TTTAGACAATATGTCTTGAAACTATCTCTCTAAGATGAAAATGTTACTTT
TGAATATAGTTTtttaaaacaaagatttagtaTAAAGATTTGATTTGTGA
CTTTGTTGTTGAATGCATTTGAAAAGATTGACCTATTTACATAGGGTAGT
TGAAAGAAATCAATTAAATATTAGTAACATTTTATTTCACTTGAAAGATT
AACATTGACAATCTTAAGGAAACTaacttttttatcttctttctCCATGC
TCTGGCAACctctttatcaaataaatttgattCAACATTAACAGTTGATA
AGAAATTCTGATATTATAACTCAACTAGCCCAATCATTTCTCTACGAATA
CTTCTCTCTATCAAGCTACTAAAGTTAATGGTCCCACTCCTAAGAGCCAA
CTATTTGCCAAACGAATTTGCTGTCATAGCAACATAGCataaattaccta
tttcatTATATTTTGAATAGCACTCAACAATTAGTTTCTCTAACAACTGT
ATAGCAACGAAATGAGGTGTGTTGCACTCTAATGTCTCATGTCAgctttt
ggtttgttttgtagTAGTTGTTGTGAGTAAAAATAGTTTGAGTCCTAAAG
TAAACATTGAACCTTTAGTAATATGCAACAGCTTTTTTTCATGACAGTGT
AGTCTAGTAGGatggttttgaaaattatataaaCGTTGAGGGAGTTGTGT
TTTGATTTACTTGGTGTCACTCAAATAATGTTAGATTCGTATTATCATAG
TTTACATTATGATATAATAGTGTGTTCTCTCCTGATGTGTTTTGATTCTA
ATGACTGATATACCAGGGCTTTTATTGTCACTCTTTCTTACACTCTGAAC
TCAAAATATTATCTGAAAGGGATCCCTGTagtattttcaagtattatTAT
ATACTGTATTTTATTATAACACTTGAATTTTACTTGAATTCTTTGTGAAG
ACtcaatttatcattttatagTGTAAAGAAAGTTATTATTGATGGATTAT
CTTAACTTGGTAGGGAGCTAACACAACATAGTTAGATGAAACGAGTTGTT
TTTCGGGTTTTAGGCATGGCTTATTTCTCAAGTCCATGCTAAAACTCTAG
ATTAAAATCATCTTATACTGATTGCAAGTTGTTCATAGAAGTCTTAGATT
TTTGTAACACATAGTTAGAAGGATTTCGGTTGCTTTAAAAACTGATACCC
AGAACCGATTTTACCCAGGTACCCTCTGGTTTACAAAGAGTTCTTGAGTT
TATGGCAGTATTGAACAGCGcactattttcattttttgaacaacatagat
attttttatttgtcttTTAATCAAAATCCTAGACTGCAAAAAAACACAAC
AGTGGACTTACATTCAAATTATAATAGGGAAAactaaagaaaagaaataa
ttttatataattttctCACTCTGTAGGTATCCAATTTCATTATCCCCAGA
TGGGATGAAGTTTTAGGGTTTAGGTCAACTTTTCTATTGATAAAGTcatc
tttattttgtttttaattcaattttatcAACACTTTTGTGACCTATGTTG
CAATCAAGTTTGATAAACTTTGGATGGGCTTAGATTACTTTTGGCGATGA
ATTTCGAAATTGTCATCACTAACGTTAATTTTCTCTACAGAGCATAACGT
TTACTGGCAACCTTAACAACCTAAATCTACTCAAGTTACTTTTCTCACTT
CGAGATTTACCTTTTTGACCTTTACATAAAACTATGGTTCAAATGCCTTC
CCATCAGAAAAATGTCTTGCTCGGGGTAAATACTTGTATATTAGTGTTTC
TTTCTGttgcaaaatgaaaattatagtGGAGAAAGCAATTGGTAGGTCTT
ACTTTTTGATGAGAAGTTCCAATTTAGAATTGTTtgattttgtatatatt
ttcctgaaagaaattaattgttctttttttcttcagccTTGACAAGTTTT
GTTAATTTATATGGGTCTTCTTTCAGAAAAGGATTTCGAAATCTCGAACT
CTACTCATCTTAAGATCTAGCCACgttgaaagttttctttttgtcaAAAT
TGTTCTCGAATACTCTCACGTCAAAATAAAGTTTTCCAGTTGGCGATTTC
CTGGGACAATACTACCAAATTCTACAAAAAATCGGAATTGGAAATCTACC
AGAATCTACTATTTTAGTTTTCTCAGATTTTACAAGCACTTTCGTTATAA
GGAACTTTTAGAATTGACTTTCTAAGGGCCTCTTGCTCCACCTTCTTGCT
CCCTTCAGTGCTCCGTAGAAATTTTTCCATAACTTCACCAGCTTTGAAGA
AAAACAGTTATGAATTCCAAAGGAATCGTATAGTGAGAGAATAAAATTAA
AACGTATATACTACTTGGTCGGGTCCTCTCTTGAACTTGTGAAAATTCGA
AATTCTGTTTTGCTGTTATTCAGACATCTAATTGTAGTGGGCATTTGGTA
TTTTGTTTAATGAAAGTGAGTTTCTCTGAACGgaaggatttttttttgga
actaTTCGTTTGGCTGGTCTATGTTAGTCTAAAGGAAAAAAAAGCTCGAG
CTAAATTTCGTATTTTATCATAAAATTTATGCAGCTGACCTCAATACTGT
TATATATCTTTATATATCTATTGtagaaaaaaaagttctttCGAACTTAA
GTATGACAGTTTAATTTCAATATACAGTGTTGCTCCTTTCCAAATCAGTG
GAATGGGTACGtcaactgtttttctttgagtCAACATACAACATATTCAA
CATTATACACTGTAACACTGATGTCTTTTTTCTCTCTCATTTTCAGATTT
GCTTCAAAAATACAAGGGGGCGATCATCTTCCTGTTTGTCATCCTATTTA
TAACAATCTTGCTGGTCACACTATACCTTATGTTAAAGAAAGGcttctgt
tgttgttgttgcaacAAAGAGAAAGAGGACGAAGAGAGTCTTTACACTGA
CCTCGAGCATGATGAAGAAGACGATGAGATGGAGGGTCATATCCCTCCTC
CAAAAGGTGAACTTCTCCACAGCGGTGAACATCACTTAGAACCCGAAGAA
CGTGCCGTAGAGGAGCAGGAACATCACATTCCGGAGATCATCGTCACCGA
AGGTCATTTCGTCCCTGAGAAGAAGAGCAAGAAAAAACAACTGTCCGGTA
TGTTGAAACGAATGCGACCGGGCAAAGGAAAAGTCCGATTTAGCCCGTCT
AGTGAACAGATCAGCATGATAAGTTCAGAAGGTAGCACCATTACCAGCGA
TTACGGATCGACCACGAATTCCTTACCTATTCACAGATCAGATTCTATGG
AGAGTTTCATGTCGGCTGTTTCGGCCGCTACAACGAACAATATCGATGAG
TTTGGAGATGAACTTTCTCCGAGTCGTTTGCAAGTTTTTTTACATTATGA
TCCGAAATTATGGACTTTGACAGTAGGTGTCAAGCAAGCTGATTGCTTAG
TATCGACCACAGGTAGTGCCATGTATTGGCAAGCACATGTAACAATATTA
CCCTTTAAAAAACATAGATTCAAAACGAAGTATAAGTCGACATCGACACC
AATTTTTAATCAGAACTATGAAGTAGAAAACATCGCGCAACAAGCCCTCT
CACAGCTTTCCGTTCGTTATCGGATCTACGGCCGTCCAGGGCGAGGTGGG
CGTAAAAAGCTGGCGGGAGAAACAGAAGTTGAACTTTCACATATAACCCA
GATGGAGGATATGATAATAAAGGACTGGCGTGTTTTGAGGCGTAAAGGTG
GACCTTTCATCCGCCATGAAAGTGAAGTTTAGATGTTTAttttaaattct
tatttttgggAGGGCTATAGTggtatatattttattttctagttttattt
ttctcgtgttgttttttattaatgacattttttgAAGGCTTAGTGTAAAG
GGCTCTGTCCAGAGAGGAACCAGCTTCTAATTTGCAACGAAAAATTTTTC
TATTCAGATATATTAATGATTACTCAAACTGACTCGGTGAACtctgaaga
aaaattaaaaggagCTGCATAAAGATGAATCTccctcttttttataaaaa
ttactcATTTTTAATGGGTTATTCACTGTTATGTTCtattgtattttaat
ttttttacattttaatttaCAACTTGGGGTATTTTAAGTGAAAAGTACAT
GGCAAATATGGAGAGATCACTTTACTTAGTCAGAGCCCGGAGAACTGGCA
TAATTTTATAGTAAAGACAGAGACTTAAGGGGAAGCACAATTTTgacgtt
ttgatttttgaattcagACTTTATCTTTTGTTCTCTGATCAGAGACTAGA
ACAATTATATCATTCTATCAAAGTTTCCAAACCTGAAGCTTTTACCTGTC
GATGTAGAATAATTGGTAGTAGTATTCTTGTTAGATTTTTTAGTAGCTAA
ATTAagggagatattttcgtgtttttctaaccaacattttctttttttaa
ttcatttttataTGTCATCATCCATACTTGTAAAAATAAACCATTAATAG
TCTACTACGATAATTACACACTACATATGCAGCAATCgtaattcaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009599-exon-sc0000097-1491911889:530925..530984 | TCONS_00009599-exon-sc0000097-1491911889:530925..530984 | Clytia hemisphaerica | exon |
| TCONS_00009599-exon-sc0000097-1510915933:530925..530984 | TCONS_00009599-exon-sc0000097-1510915933:530925..530984 | Clytia hemisphaerica | exon |
| TCONS_00009599-exon-sc0000097-1575043694:530925..530984 | TCONS_00009599-exon-sc0000097-1575043694:530925..530984 | Clytia hemisphaerica | exon |
| TCONS_00009599-exon-sc0000097-1491911889:535571..537323 | TCONS_00009599-exon-sc0000097-1491911889:535571..537323 | Clytia hemisphaerica | exon |
| TCONS_00009599-exon-sc0000097-1510915933:535571..537323 | TCONS_00009599-exon-sc0000097-1510915933:535571..537323 | Clytia hemisphaerica | exon |
| TCONS_00009599-exon-sc0000097-1575043694:535571..537323 | TCONS_00009599-exon-sc0000097-1575043694:535571..537323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:530925..537323 + |
Blast
The following BLAST results are available for this feature:
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