TCONS_00009553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009553
Unique NameTCONS_00009553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009553 ID=TCONS_00009553|Name=TCONS_00009553|organism=Clytia hemisphaerica|type=transcript|length=320bp
cgACTATAAGAATTGATATGAAATGATTTAGTTGACCAGCAACTAcgtac
aaaatacaaaaaatttagTAATAGACATAATTTAGTGTTTCTTTGTTGCT
GGATGCTCAGTTTTGAATTTTCCTTCATACAAACATGCGTCCCAATCTTG
GTTGTACAACAATCCTTTAGGACAAGCAATGCATCCGACAGTTTGTCCTT
GATAACATCCAACATATTGGTGTGGGCTGTTTGGATCAGCAAGGTTTCCA
GTGAAGTGTTTGCCAGCATGAGGACATTTGTCAGGACATGCAAAAGTGGT
AGCAGGTTGGAATGGTAAAG
Run BLAST on NCBI

protein sequence of TCONS_00009553-protein

>TCONS_00009553-protein ID=TCONS_00009553-protein|Name=TCONS_00009553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
LYHSNLLPLLHVLTNVLMLANTSLETLLIQTAHTNMLDVIKDKLSDALLV
LKDCCTTKIGTHVCMKENSKLSIQQQRNTKLCLLLNFLYFVRSCWSTKSF
HINSYS
Run BLAST on NCBI

transcript from alignment at sc0000095:249594..249913

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009553 ID=TCONS_00009553|Name=TCONS_00009553|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at sc0000095:249594..249913 (Clytia hemisphaerica)
CTTTACCATTCCAACCTGCTACCACTTTTGCATGTCCTGACAAATGTCCT
CATGCTGGCAAACACTTCACTGGAAACCTTGCTGATCCAAACAGCCCACA
CCAATATGTTGGATGTTATCAAGGACAAACTGTCGGATGCATTGCTTGTC
CTAAAGGATTGTTGTACAACCAAGATTGGGACGCATGTTTGTATGAAGGA
AAATTCAAAACTGAGCATCCAGCAACAAAGAAACACTAAATTATGTCTAT
TActaaattttttgtattttgtacgTAGTTGCTGGTCAACTAAATCATTT
CATATCAATTCTTATAGTcg

Coding sequence (CDS) from alignment at sc0000095:249594..249913

>TCONS_00009553 ID=TCONS_00009553|Name=TCONS_00009553|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000095:249594..249913 (Clytia hemisphaerica)
CTTTACCATTCCAACCTGCTACCACTTTTGCATGTCCTGACAAATGTCCT
CATGCTGGCAAACACTTCACTGGAAACCTTGCTGATCCAAACAGCCCACA
CCAATATGTTGGATGTTATCAAGGACAAACTGTCGGATGCATTGCTTGTC
CTAAAGGATTGTTGTACAACCAAGATTGGGACGCATGTTTGTATGAAGGA
AAATTCAAAACTGAGCATCCAGCAACAAAGAAACACTAAATTATGTCTAT
TActaaattttttgtattttgtacgTAGTTGCTGGTCAACTAAATCATTT
CATATCAATTCTTATAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005335XLOC_005335Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009553-exon-sc0000095-1491911889:249594..249913TCONS_00009553-exon-sc0000095-1491911889:249594..249913Clytia hemisphaericaexon
TCONS_00009553-exon-sc0000095-1510915933:249594..249913TCONS_00009553-exon-sc0000095-1510915933:249594..249913Clytia hemisphaericaexon
TCONS_00009553-exon-sc0000095-1575043694:249594..249913TCONS_00009553-exon-sc0000095-1575043694:249594..249913Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009553-proteinTCONS_00009553-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:249594..249913 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0480027	0	0	0	0	0	0	0.421065	0	0	3.0722	10.2671	0.916547	0.44483	0	0	0	0.355493	0	0	0	0	0	0	1.02407	1.5854	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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