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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009333 ID=TCONS_00009333|Name=TCONS_00009333|organism=Clytia hemisphaerica|type=transcript|length=1048bp
CGCTCCTTGAATTTAAGATGGAGATAGAGATGGAACCGCGCTTGATTAAT
TTTAATGTGAAAATTGGCGatcaaaacatttctttccatTCAAGAGAAAG
CATAATGGTCAGTGAGATCAAATTGGAGGTCTTCAAAATCACTGGAATTC
CAATTCCAAACCAAATCGTTTTTCAAAAGCATGCAAGATCTTTGTTTGGA
TTACCTGATGACAAAACGATTGTGGTCAACGAACCTGCTACCGGTGAACC
GCTGGCCCATCTGCAATGCCTGGTGACTCCTATAAAGGGATATCCACAGC
TTGGGGTATTTTATCGACAGTTATTAGAAGATGAGTTAAATCAACATAAA
CATAGTTGTAAAGACTGTTTGATATATCAAAGAGAAAGGTTTGACCCCAA
GGATGTTTATGATGACGAATATGGTTATATTGACGAGGAACCCCCTTCTA
ATAGTGAATTTTATTTTAACCACGACGAGTTGATACGTGCAAGATATTCG
TTCAAACATCTTTTTGAAGTACTGCATACATTCCCAATTGTATATGTTTG
CATTTCAGAGGACCATAGCCACTTGGTCAACTTTGATGCCAACAAGATGG
GGGAACAANTGTTTGCATTTCAGAGGACGATGGCCACTTGGTCAACTTTG
ATGCCAACAAAATGAGGGAACAACCAGATTTGTGCTCTGTTGAAGGGATC
AAAACTCTGTTTCGTCAAAATATGAAAAGTAGTTGCTCGATGCTTTCAGA
TGATCAAACGTTTCTTTTTGTTGAAACTATGAGAACACAAGTCGGTTTAT
CCTGCATAGAAATCATTCACAATGATTATCAGtggttttataaaaaacaa
agttctaggaatgaagtTGATGTTTTTGTTCGATTCGGCCTTGGTGTATT
CAGCCAACCCTCGGGCTCTAGTTTTATCCGCTCCGATTTGTTCGTCCAAA
TTATAAACACAAGTGGTGAGGGTTTTCTTAAATGGTACCCTAATAATTCT
ACTTGTCATATCGATGGTTTGAAATGTTTTGTGGAAGCTAACTTGTGG Run BLAST on NCBI protein sequence of TCONS_00009333-protein >TCONS_00009333-protein ID=TCONS_00009333-protein|Name=TCONS_00009333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
LLEFKMEIEMEPRLINFNVKIGDQNISFHSRESIMVSEIKLEVFKITGIP
IPNQIVFQKHARSLFGLPDDKTIVVNEPATGEPLAHLQCLVTPIKGYPQL
GVFYRQLLEDELNQHKHSCKDCLIYQRERFDPKDVYDDEYGYIDEEPPSN
SEFYFNHDELIRARYSFKHLFEVLHTFPIVYVCISEDHSHLVNFDANKMG
EQXFAFQRTMATWSTLMPTK Run BLAST on NCBI transcript from alignment at sc0000091:588118..589165 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009333 ID=TCONS_00009333|Name=TCONS_00009333|organism=Clytia hemisphaerica|type=transcript|length=1048bp|location=Sequence derived from alignment at sc0000091:588118..589165 (Clytia hemisphaerica)
CCACAAGTTAGCTTCCACAAAACATTTCAAACCATCGATATGACAAGTAG
AATTATTAGGGTACCATTTAAGAAAACCCTCACCACTTGTGTTTATAATT
TGGACGAACAAATCGGAGCGGATAAAACTAGAGCCCGAGGGTTGGCTGAA
TACACCAAGGCCGAATCGAACAAAAACATCAacttcattcctagaacttt
gttttttataaaaccaCTGATAATCATTGTGAATGATTTCTATGCAGGAT
AAACCGACTTGTGTTCTCATAGTTTCAACAAAAAGAAACGTTTGATCATC
TGAAAGCATCGAGCAACTACTTTTCATATTTTGACGAAACAGAGTTTTGA
TCCCTTCAACAGAGCACAAATCTGGTTGTTCCCTCATTTTGTTGGCATCA
AAGTTGACCAAGTGGCCATCGTCCTCTGAAATGCAAACANTTGTTCCCCC
ATCTTGTTGGCATCAAAGTTGACCAAGTGGCTATGGTCCTCTGAAATGCA
AACATATACAATTGGGAATGTATGCAGTACTTCAAAAAGATGTTTGAACG
AATATCTTGCACGTATCAACTCGTCGTGGTTAAAATAAAATTCACTATTA
GAAGGGGGTTCCTCGTCAATATAACCATATTCGTCATCATAAACATCCTT
GGGGTCAAACCTTTCTCTTTGATATATCAAACAGTCTTTACAACTATGTT
TATGTTGATTTAACTCATCTTCTAATAACTGTCGATAAAATACCCCAAGC
TGTGGATATCCCTTTATAGGAGTCACCAGGCATTGCAGATGGGCCAGCGG
TTCACCGGTAGCAGGTTCGTTGACCACAATCGTTTTGTCATCAGGTAATC
CAAACAAAGATCTTGCATGCTTTTGAAAAACGATTTGGTTTGGAATTGGA
ATTCCAGTGATTTTGAAGACCTCCAATTTGATCTCACTGACCATTATGCT
TTCTCTTGAatggaaagaaatgttttgatCGCCAATTTTCACATTAAAAT
TAATCAAGCGCGGTTCCATCTCTATCTCCATCTTAAATTCAAGGAGCG Coding sequence (CDS) from alignment at sc0000091:588118..589165 >TCONS_00009333 ID=TCONS_00009333|Name=TCONS_00009333|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at sc0000091:588118..589165 (Clytia hemisphaerica)
TCATTTTGTTGGCATCAAAGTTGACCAAGTGGCCATCGTCCTCTGAAATG
CAAACANTTGTTCCCCCATCTTGTTGGCATCAAAGTTGACCAAGTGGCTA
TGGTCCTCTGAAATGCAAACATATACAATTGGGAATGTATGCAGTACTTC
AAAAAGATGTTTGAACGAATATCTTGCACGTATCAACTCGTCGTGGTTAA
AATAAAATTCACTATTAGAAGGGGGTTCCTCGTCAATATAACCATATTCG
TCATCATAAACATCCTTGGGGTCAAACCTTTCTCTTTGATATATCAAACA
GTCTTTACAACTATGTTTATGTTGATTTAACTCATCTTCTAATAACTGTC
GATAAAATACCCCAAGCTGTGGATATCCCTTTATAGGAGTCACCAGGCAT
TGCAGATGGGCCAGCGGTTCACCGGTAGCAGGTTCGTTGACCACAATCGT
TTTGTCATCAGGTAATCCAAACAAAGATCTTGCATGCTTTTGAAAAACGA
TTTGGTTTGGAATTGGAATTCCAGTGATTTTGAAGACCTCCAATTTGATC
TCACTGACCATTATGCTTTCTCTTGAatggaaagaaatgttttgatCGCC
AATTTTCACATTAAAATTAATCAAGCGCGGTTCCATCTCTATCTCCATCT
TAAATTCAAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009333-exon-sc0000091-1491911889:588118..589165 | TCONS_00009333-exon-sc0000091-1491911889:588118..589165 | Clytia hemisphaerica | exon |
| TCONS_00009333-exon-sc0000091-1510915933:588118..589165 | TCONS_00009333-exon-sc0000091-1510915933:588118..589165 | Clytia hemisphaerica | exon |
| TCONS_00009333-exon-sc0000091-1575043694:588118..589165 | TCONS_00009333-exon-sc0000091-1575043694:588118..589165 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:588118..589165 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
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