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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009203 ID=TCONS_00009203|Name=TCONS_00009203|organism=Clytia hemisphaerica|type=transcript|length=1020bp
CCTGGGTTCGTTTTGCTATGGGTGTTAATCACCTATGTGGAACATTTGAT
CAGTATGAGGAAATATCCAAAAGGTCCATTTCCTTTACCTTTGCTTGGTA
ATCTGAAACTATTGGGGAAGAAACCTTTCTTGGATTTTATCAAGTTGAGT
AAAACTTATGGTGACGTCTTCAGTATGAGTTTCGGCATGAAACGTGTGGT
AGTAATCAATTCATACGAAGCAATAAAAGAAGCTTTAGTGACAAGAGGTC
ACGATTTCGCTGGTCGTCCAAACGATAATATACCTCTCGGAATTCAAACT
AATAATTTCCAGGATTTAGCAACAAAGGACTATTCGAAGTCTTGGTCTTT
TCTACGGAAATTGACgtacaaaagtcttcatttttacGGTACTGGTATTA
AAAATGTTGAAGATTTGGTGATGGAGGATGTCGAGGAAATGGTCTCTTTA
TTGTCCAAAGAAGTTGGCAATCCGATTCTTATTCATAAATATTTCGgaaa
caCTTCTATCAACACAATCAACAACATTTGTTTCAGTAAGAGATACCTTC
CCACCGATCCCGAGTTCTTAGACATTCTTCGATTCAGTCACCACCTTAAT
CTCGGGTGTGCTCCCGGTCAACTTATCACTGTTTTTTCCATGGTTACAAT
ACTTTCCAGACACTGAAcgttttcgaaatttaaaaattgcttCCAAGGAT
CGGCAAGCGCACACACATCGTATGTTCAATGAGCATATCGCGACTTTCAA
CCCGGATAAAATGCGAGATTTGACCGACCACTTGTTGtattagctctagt
ttagacggcccactttttgccctgcctattctaattgtgaattaaacagg
gcataaagtgggctgtctaaagtgatgcaaagccctcttttgacgtcaat
gcaatgtcttctttcaaacctttccaagcaaagattctaacaaccaactt
tgtgccctctttctgcctactctaacaattagaataggcagggcagaaag
tcggccgtctaaactagagc Run BLAST on NCBI protein sequence of TCONS_00009203-protein >TCONS_00009203-protein ID=TCONS_00009203-protein|Name=TCONS_00009203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
PGFVLLWVLITYVEHLISMRKYPKGPFPLPLLGNLKLLGKKPFLDFIKLS
KTYGDVFSMSFGMKRVVVINSYEAIKEALVTRGHDFAGRPNDNIPLGIQT
NNFQDLATKDYSKSWSFLRKLTYKSLHFYGTGIKNVEDLVMEDVEEMVSL
LSKEVGNPILIHKYFGNTSINTINNICFSKRYLPTDPEFLDILRFSHHLN
LGCAPGQLITVFSMVTILSRH Run BLAST on NCBI transcript from alignment at sc0000091:495338..496960+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009203 ID=TCONS_00009203|Name=TCONS_00009203|organism=Clytia hemisphaerica|type=transcript|length=1623bp|location=Sequence derived from alignment at sc0000091:495338..496960+ (Clytia hemisphaerica)
CCTGGGTTCGTTTTGCTATGGGTGTTAATCACCTATGTGGAACATTTGAT
CAGTATGAGGAAATATCCAAAAGGTCCATTTCCTTTACCTTTGCTTGGTA
ATCTGAAACTATTGGGGAAGAAACCTTTCTTGGATTTTATCAAGTTGAGT
AAAACTTATGGTGACGTCTTCAGTATGAGTTTCGGTGAGTTGGttgaatt
ttataaaaaaattggaacattTGTATGAACTCTTTTTTATTTAACGATCG
TTGATTTGAAACAACAGCTAACTCAAAAGTCTGATAGCTTAACCATATGG
CTTCAAAGTAAAAGGCTTTTGGTTCTTCAAAGTTTGGTCAGCAAAAAGGT
GACGTTGAAAACAATAGATGATCCTAATTCCTTTTGGATCTTTTGACTCA
AATTTTACCAGTCTAAATTTACTGAAACTAGCCCTAAAAATCACTGATAC
TTGATACGACTCTGTCTTTTCAAATTTCTAGGCATGAAACGTGTGGTAGT
AATCAATTCATACGAAGCAATAAAAGAAGCTTTAGTGACAAGAGGTCACG
ATTTCGCTGGTCGTCCAAACGATAATATACCTCTCGGAATTCAAACTAAT
AATTTCCAGGATTTAGCAACAAAGGACTATTCGAAGTCTTGGTCTTTTCT
ACGGAAATTGACgtacaaaagtcttcatttttacGGTACTGGTATTAAAA
ATGTTGAAGATTTGGTGATGGAGGATGTCGAGGAAATGGTCTCTTTATTG
TCCAAAGAAGTTGGCAATCCGATTCTTATTCATAAATATTTCGGTAATTA
TttgttaaattttaattttgctttAGTTATTGCCAGTGAAAAAGTTAGGC
TAGCATTTGAATTGTTCGGTAATACTTAATTGGTGTACCACAGAAATGGG
CGTTATTGGTCAGTAGTAGCCTGTGAAAGGACCAAAGTTTTGCATTTCTT
ACCAAAAGTGgtgatatcaatttttttgactttataagATGAGGCTGCCA
CCATGATAAAAACGCATTCTGAATTCAATCCCTTTTGATAATTACAGGTA
GTAAGGCCCATGGATCCTACTGAAATCtttattgttgattttttttcagg
aaacaCTTCTATCAACACAATCAACAACATTTGTTTCAGTAAGAGATACC
TTCCCACCGATCCCGAGTTCTTAGACATTCTTCGATTCAGTCACCACCTT
AATCTCGGGTGTGCTCCCGGTCAACTTATCACTGTTTTTTCCATGGTTAC
AATACTTTCCAGACACTGAAcgttttcgaaatttaaaaattgcttCCAAG
GATCGGCAAGCGCACACACATCGTATGTTCAATGAGCATATCGCGACTTT
CAACCCGGATAAAATGCGAGATTTGACCGACCACTTGTTGtattagctct
agtttagacggcccactttttgccctgcctattctaattgtgaattaaac
agggcataaagtgggctgtctaaagtgatgcaaagccctcttttgacgtc
aatgcaatgtcttctttcaaacctttccaagcaaagattctaacaaccaa
ctttgtgccctctttctgcctactctaacaattagaataggcagggcaga
aagtcggccgtctaaactagagc Coding sequence (CDS) from alignment at sc0000091:495338..496960+ >TCONS_00009203 ID=TCONS_00009203|Name=TCONS_00009203|organism=Clytia hemisphaerica|type=CDS|length=1998bp|location=Sequence derived from alignment at sc0000091:495338..496960+ (Clytia hemisphaerica)
CCTGGGTTCGTTTTGCTATGGGTGTTAATCACCTATGTGGAACATTTGAT
CAGTATGAGGAAATATCCAAAAGGTCCATTTCCTTTACCTTTGCTTGGTA
ATCTGAAACTATTGGGGAAGAAACCTTTCTTGGATTTTATCAAGTTGAGT
AAAACTTATGGTGACGTCTTCAGTATGAGTTTCGGCATGAAACGTGTGGT
AGTAATCAATTCATACGAAGCAATAAAAGAAGCTTTAGTGACAAGAGGTC
ACGATTTCGCTGGTCGTCCAAACGATAATATACCTCTCGGAATTCAAACT
AATAATTTCCAGGATTTAGCAACAAAGGACTATTCGAAGTCTTGGTCTTT
TCTACGGAAATTGACgtacaaaagtcttcatttttacGGTACTGGTATTA
AAAATGTTGAAGATTTGGTGATGGAGGATGTCGAGGAAATGGTCTCTTTA
TTGTCCAAAGAAGTTGGCAATCCGATTCTTATTCATAAATATTTCGgaaa
caCTTCTATCAACACAATCAACAACATTTGTTTCAGTAAGAGATACCTTC
CCACCGATCCCGAGTTCTTAGACATTCTTCGATTCAGTCACCACCTTAAT
CTCGGGTGTGCTCCCGGTCAACTTATCACTGTTTTTTCCATGGTTACAAT
ACTTTCCAGACACTGACCTGGGTTCGTTTTGCTATGGGTGTTAATCACCT
ATGTGGAACATTTGATCAGTATGAGGAAATATCCAAAAGGTCCATTTCCT
TTACCTTTGCTTGGTAATCTGAAACTATTGGGGAAGAAACCTTTCTTGGA
TTTTATCAAGTTGAGTAAAACTTATGGTGACGTCTTCAGTATGAGTTTCG
GCATGAAACGTGTGGTAGTAATCAATTCATACGAAGCAATAAAAGAAGCT
TTAGTGACAAGAGGTCACGATTTCGCTGGTCGTCCAAACGATAATATACC
TCTCGGAATTCAAACTAATAATTTCCAGGATTTAGCAACAAAGGACTATT
CGAAGTCTTGGTCTTTTCTACGGAAATTGACgtacaaaagtcttcatttt
tacGGTACTGGTATTAAAAATGTTGAAGATTTGGTGATGGAGGATGTCGA
GGAAATGGTCTCTTTATTGTCCAAAGAAGTTGGCAATCCGATTCTTATTC
ATAAATATTTCGgaaacaCTTCTATCAACACAATCAACAACATTTGTTTC
AGTAAGAGATACCTTCCCACCGATCCCGAGTTCTTAGACATTCTTCGATT
CAGTCACCACCTTAATCTCGGGTGTGCTCCCGGTCAACTTATCACTGTTT
TTTCCATGGTTACAATACTTTCCAGACACTGACCTGGGTTCGTTTTGCTA
TGGGTGTTAATCACCTATGTGGAACATTTGATCAGTATGAGGAAATATCC
AAAAGGTCCATTTCCTTTACCTTTGCTTGGTAATCTGAAACTATTGGGGA
AGAAACCTTTCTTGGATTTTATCAAGTTGAGTAAAACTTATGGTGACGTC
TTCAGTATGAGTTTCGGCATGAAACGTGTGGTAGTAATCAATTCATACGA
AGCAATAAAAGAAGCTTTAGTGACAAGAGGTCACGATTTCGCTGGTCGTC
CAAACGATAATATACCTCTCGGAATTCAAACTAATAATTTCCAGGATTTA
GCAACAAAGGACTATTCGAAGTCTTGGTCTTTTCTACGGAAATTGACgta
caaaagtcttcatttttacGGTACTGGTATTAAAAATGTTGAAGATTTGG
TGATGGAGGATGTCGAGGAAATGGTCTCTTTATTGTCCAAAGAAGTTGGC
AATCCGATTCTTATTCATAAATATTTCGgaaacaCTTCTATCAACACAAT
CAACAACATTTGTTTCAGTAAGAGATACCTTCCCACCGATCCCGAGTTCT
TAGACATTCTTCGATTCAGTCACCACCTTAATCTCGGGTGTGCTCCCGGT
CAACTTATCACTGTTTTTTCCATGGTTACAATACTTTCCAGACACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009203-exon-sc0000091-1491911889:495338..495521 | TCONS_00009203-exon-sc0000091-1491911889:495338..495521 | Clytia hemisphaerica | exon |
| TCONS_00009203-exon-sc0000091-1510915933:495338..495521 | TCONS_00009203-exon-sc0000091-1510915933:495338..495521 | Clytia hemisphaerica | exon |
| TCONS_00009203-exon-sc0000091-1575043694:495338..495521 | TCONS_00009203-exon-sc0000091-1575043694:495338..495521 | Clytia hemisphaerica | exon |
| TCONS_00009203-exon-sc0000091-1491911889:495819..496130 | TCONS_00009203-exon-sc0000091-1491911889:495819..496130 | Clytia hemisphaerica | exon |
| TCONS_00009203-exon-sc0000091-1510915933:495819..496130 | TCONS_00009203-exon-sc0000091-1510915933:495819..496130 | Clytia hemisphaerica | exon |
| TCONS_00009203-exon-sc0000091-1575043694:495819..496130 | TCONS_00009203-exon-sc0000091-1575043694:495819..496130 | Clytia hemisphaerica | exon |
| TCONS_00009203-exon-sc0000091-1491911889:496437..496960 | TCONS_00009203-exon-sc0000091-1491911889:496437..496960 | Clytia hemisphaerica | exon |
| TCONS_00009203-exon-sc0000091-1510915933:496437..496960 | TCONS_00009203-exon-sc0000091-1510915933:496437..496960 | Clytia hemisphaerica | exon |
| TCONS_00009203-exon-sc0000091-1575043694:496437..496960 | TCONS_00009203-exon-sc0000091-1575043694:496437..496960 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:495338..496960 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
The following BLAST results are available for this feature:
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