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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009190 ID=TCONS_00009190|Name=TCONS_00009190|organism=Clytia hemisphaerica|type=transcript|length=3755bp
aagaaaatcaaatcaatcataTTCTAGAACGGCGCACTGTTTGTGTAGTT
TattaaaacaaaacatttactTTGGTTTGAAATTCAACCAGCCATGAAAA
TTATGCTCAATACCTCATATTAACTCTCGCTGAGATCTCGTGCATCGCTT
TTTGATGGAAaagtaatacaaaaaaatttctataacTTATTTCGAAAACC
TTCATCTATCCAGGTTTTAATTGGACAATTTGCAAATGAAAAGGATGAGG
GTGGAGTTGGCAATCAGCGCCCTTCTACTGATTCAAATAATCAACGCCCT
TCCACATTCACGATACCAAGAATCGAACAGTCGTACGAAGAATGTTGGAG
GATTTCGCATCAATAAAAAGGGAGTAGTCGAGCAATGCGTAGATGCCGCC
TGTGAGACAAAAGGTAGTGGAATCACAGATACAGCGATCGCTGAGATCAA
ATCACAGATTGAACACAGTAATGGCAAGATGGACATGATGAAAAACGGCA
ATCGTCATATATCGACTGTAGTAGCCAAAAAGAAATCTGCAGAACCTTCT
GTCACTGAAGATGCTTTCTTCGCAAGCCCTGAAGTGGAGAAGGAGATTGT
GAAAGGCGAACAGAGGATTCTCGCTGCAAAACAAAAAGCAGCTCATAAGA
AAGAAATCGGAGAGAGTGATAAAGACTATTATGCAAGAAATCTCGAAGAG
GATCATACACCTAAAAAAGCAAACGGGGAACCAATGAAGCTTGCGACAGA
CGAAAAGGAGAACATGAAATTACCAGGAGACAATCCAAAGACTGATTCCA
AGTCAAAGAAGGAGCCACAAGACCCAATGCTGTTGCCAGGCGACCCTAAG
AAAAGCAGTGAGGATGAAGCTAAACCAAAGAAAGACGAGAAGTCAAATAA
GAAGGCTGAATTGAACACAGATTCAAAAGATTCAGAAGGTGTTCCAACCA
AAAATCCTAATGATAAAACAGAAGatgagaagaaaaagaaagacgaGGAC
GAGAAAAAGAAAGACGAGGATAAGCAGAAGGAAGAAAAGATGGAAAAAGA
CGCTAAggaagaacaaaagaagaagGAGGAGGAGGCtgagaaggagaagg
agaaggaggagaagaagaagaaggaagaagaagagaagaaagaaCAAGAA
AGAAAGGACGAGGAAGCAAAGAAGAAGGCTGAAGAGGAAGAAACGAAGAA
AGCTGAAGAGGAAgaagagaagaagaaaaaagatgaagaagaaaagaaga
aaaaagatgaagaagaaaagaagaaaaaagatgaagaagaaaagaagaaa
aaagatgaagaggaaaagaagaaagctgaagaggaagaagagaagaagaa
aaaagatgaagaagaaaagaagaaggctgAGGAGGAAGAAACGAAGAAAA
AAGATGACGAAGACCCAAAGAAAAAGGAGGAGGAGAAGGACgaagaagag
aaaaagaaagaggaagagaaaaagaaaaaagaagacgaAGAGGAGAAAAA
GAAGGAAGAGGAGGAGAAGAAAAACAACGACGAACAAACGAAGgagcaaa
agaaagaagaaggcAAAGATAACAAAGAAGCTGAAAAAATGGACGAAAAC
AAGACGACTCAAGCCAAAAAAGCTGAAGAGGAAGAAGAGAAAAAACAAGA
AGCAGATAAAAAGGAAAACGAGAAGCAGAAGAAGGCTGAGGAAGAGAAAG
AAGCTCAAGAAAAAGAAGCGAAAAAGAAACAAGAAGAGGAAGAGCAAAAG
CAAAAAGAAGCGATGAAGCAAgctgaagaaaaacaaaaggaggatgaaaa
gaaagtcgaagaagagaaaaaagaagTGGAAAAGAAGGCAGAAGAACAGA
AAACACTTGACCAAAAGCAAGctgaagagaaagaaaaattgattaaGAAG
CAAGAAGAAGAACAGAAGAAGCTCGAAAATAAACAAAGCTCCGAACAACC
AAAGGAAAAAGAGGCTGCTTACGGAGATTTCAAGAAGTTCAACCCGGCag
gagaaaaagaaaagaaagaaggcAGTAAAATGGACTGGTTTGACATGAAG
GATATGGACCATGATCAATCCATTCGAAGTGAATGTACTGACGCCGCATG
CACGGTGGCAGGGGCCAGTGCCGTACACGAGAGCAAAGAGGAGGAAGCTC
TTAATGCACTGAAAATGGCAAAAGGAGAGAAAGACGAGAAAGCAAAAGAA
GATATAAAACCTGAAGACAAAATTGTTGAAGATAAAAAACctgaaagtga
agaaaataaGAAACCCGAGGAGGAGCCAAAAGTGGAGGAGACGAAAAAAC
CTGAGCAGGAGCAGAAAGTAAATGAAGCACTTTCCAAAGAAGGAGAGAAA
CCACTCTCTGAGGAGGAGCACGGAAACAAAGGAGAAGGGTGCACCGATGC
TGCTTGTTCAGCCGCTTTCGAGAAAGACAACAAGGGTGAGAGTGATGGCC
AGAAAATGGAGGGGAGCGAAATGAAAAAGGAAGGAACGTCAGAAGAGAAC
GGTGGAGAGCAAACAAAAGCTAATGAGAAGGAGGAGGGAAAGGAAGAGGA
TAAAAAGTTTGATCCAAAAGAAGATGATAATGGTCCCAACAAGAATTGGC
TTCCTAAATTTTCAGAAGGCGAAAGAGATTCAAAAGATGAGAAATCAAGT
GACGAAAAGGAGGAGAAAACAAAATCGAACGATTCACAAGAATTATTAAT
GGATAAACCATCACAAGACCAAAACGAACAGAACAAAACAACCGAGTTTG
ATAACAAATCGAGTACGAAGAAAGAGGAAGATgacgaaaaaaatcgaaaa
gaagaagaaaataaagaagaaacgAAAAGTCAGTACGAAAGAAGCCCACA
GGATACTTCAAATATCGCTTGAAAATGAGATTTGCTTGTCTGATGAACTA
GGCAGTGATATTGACTGTATGAATGGACTTTTATTGTAGAGGGTATGAGG
TGTGAACAATAAACACttcaaaattgaccaaaaaggaCTGTAAACCTAGT
TTTAGATCCCAACCAACCTagaatattttttagaaaaagttcttctttaa
agcttttttcacatgtacgaaAATTCTACTAAAGACCTTGAAGGGTGGGA
ATTCacctaagcttacgtagtgtaTTAAGGCCTTATGTAGAATTTGCTTG
cgctcaaaaagttttgaacggaaggaaaagtcacgtaagaccctcttaat
caacaaaaactctacataatgtcggggaaattcccaaaagacagccttac
gaacaattttccgtaaggtcttaaataaaattttacgtacatgtgaaaaa
agcttaagtGTCGCAGATTTCTTGGAGTTAAATCTTATCACttcaaattt
tatataaagTTCATATATTTCGAAGGGgaaattttatttagtatttcaaT
TCAGCACAGTCTTTTTAAGAACTTTTGAATCTCCATGATTTCAAACCGGG
CGAAAGATTACTTCGATCTTAATCCTTCTGAATGGAATATAAAATATTAT
CTCTTGagcattttgggtttttttttgaaagcatAGTTTTTGTAATTTCA
GTATACTCTCCAAGAGGTTTAATGAGATTTCAGGGTTAGGAGAATTATTT
CTTAGCCAATTTAGAAAATTATCAGGTTttaataaaaccttaaaatgttt
gCTTTGTATATAGCCATATTTATATGTCaagacaaattttatttttgttg
aaatattttaggattttttaaaagattgaatGACATAAAATTCACATCAA
Tgtcg Run BLAST on NCBI transcript from alignment at sc0000091:190710..195054+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009190 ID=TCONS_00009190|Name=TCONS_00009190|organism=Clytia hemisphaerica|type=transcript|length=4345bp|location=Sequence derived from alignment at sc0000091:190710..195054+ (Clytia hemisphaerica)
aagaaaatcaaatcaatcataTTCTAGAACGGCGCACTGTTTGTGTAGTT
TattaaaacaaaacatttactTTGGTTTGAAATTCAACCAGCCATGAAAA
TTATGCTCAATACCTCATATTAACTCTCGCTGAGATCTCGTGCATCGCTT
TTTGATGGAAaagtaatacaaaaaaatttctataacTTATTTCGAAAACC
TTCATCTATCCAGGTTTTAATTGGACAATTTGCNGTAATACAAAAGTAAT
CTATAACTTATTTCGAAAACCTTCATCTATCCAGGTTTTAATTGGACAAT
TTGCAAATGAAAAGGTGAGATTTAATATTTCTCGGACAAATGTTTTAACG
GACACACAGGTCAGTGATGGCCTAAATCAGGGGCCAAACTTCTAAAGGGG
gtatctcaaaaagttaagttcTCTCAGCTACTATAATGAATAAATATTTG
AGCACTAAAGACTGCTTTGGGAGACGATCCTTCTTATGCGTAAGGAGTGG
TAcggaaaatatttcttgaaacTTGCATTTATTACGACTGTGGTGTTCCA
GAATTACTTCAAGAAACACTTTTTGATtaaataattttgtgattttttta
agttACCCTTTTCAATACACGATTCTgaaaaaacagaagaaaaatctCTT
TATACCTGCGTTATTGAATCAAAAAGTGGTTTGTAAAGTGTAATCTAGTT
GTGCTAAACATCATAAAAATTTTACCCGAGGGCGTAAAAGCGTGAAACTT
AACACGTTGGTTTCGGAGCCAAAATTCGGTTAAAATTTTTGGGCATTATC
AAATAATAACTATTCTCTTTATTTATTTTACAGGATGAGGGTGGAGTTGG
CAATCAGCGCCCTTCTACTGATTCAAATAATCAACGCCCTTCCACATTCA
CGATACCAAGAATCGAACAGTCGTACGAAGAATGTTGGAGGATTTCGCAT
CAATAAAAAGGGAGTAGTCGAGCAATGCGTAGATGCCGCCTGTGAGACAA
AAGGTAGTGGAATCACAGATACAGCGATCGCTGAGATCAAATCACAGATT
GAACACAGTAATGGCAAGATGGACATGATGAAAAACGGCAATCGTCATAT
ATCGACTGTAGTAGCCAAAAAGAAATCTGCAGAACCTTCTGTCACTGAAG
ATGCTTTCTTCGCAAGCCCTGAAGTGGAGAAGGAGATTGTGAAAGGCGAA
CAGAGGATTCTCGCTGCAAAACAAAAAGCAGCTCATAAGAAAGAAATCGG
AGAGAGTGATAAAGACTATTATGCAAGAAATCTCGAAGAGGATCATACAC
CTAAAAAAGCAAACGGGGAACCAATGAAGCTTGCGACAGACGAAAAGGAG
AACATGAAATTACCAGGAGACAATCCAAAGACTGATTCCAAGTCAAAGAA
GGAGCCACAAGACCCAATGCTGTTGCCAGGCGACCCTAAGAAAAGCAGTG
AGGATGAAGCTAAACCAAAGAAAGACGAGAAGTCAAATAAGAAGGCTGAA
TTGAACACAGATTCAAAAGATTCAGAAGGTGTTCCAACCAAAAATCCTAA
TGATAAAACAGAAGatgagaagaaaaagaaagacgaGGACGAGAAAAAGA
AAGACGAGGATAAGCAGAAGGAAGAAAAGATGGAAAAAGACGCTAAggaa
gaacaaaagaagaagGAGGAGGAGGCtgagaaggagaaggagaaggagga
gaagaagaagaaggaagaagaagagaagaaagaaCAAGAAAGAAAGGACG
AGGAAGCAAAGAAGAAGGCTGAAGAGGAAGAAACGAAGAAAGCTGAAGAG
GAAgaagagaagaagaaaaaagatgaagaagaaaagaagaaaaaagatga
agaagaaaagaagaaaaaagatgaagaagaaaagaagaaaaaagatgaag
aggaaaagaagaaagctgaagaggaagaagagaagaagaaaaaagatgaa
gaagaaaagaagaaggctgAGGAGGAAGAAACGAAGAAAAAAGATGACGA
AGACCCAAAGAAAAAGGAGGAGGAGAAGGACgaagaagagaaaaagaaag
aggaagagaaaaagaaaaaagaagacgaAGAGGAGAAAAAGAAGGAAGAG
GAGGAGAAGAAAAACAACGACGAACAAACGAAGgagcaaaagaaagaaga
aggcAAAGATAACAAAGAAGCTGAAAAAATGGACGAAAACAAGACGACTC
AAGCCAAAAAAGCTGAAGAGGAAGAAGAGAAAAAACAAGAAGCAGATAAA
AAGGAAAACGAGAAGCAGAAGAAGGCTGAGGAAGAGAAAGAAGCTCAAGA
AAAAGAAGCGAAAAAGAAACAAGAAGAGGAAGAGCAAAAGCAAAAAGAAG
CGATGAAGCAAgctgaagaaaaacaaaaggaggatgaaaagaaagtcgaa
gaagagaaaaaagaagTGGAAAAGAAGGCAGAAGAACAGAAAACACTTGA
CCAAAAGCAAGctgaagagaaagaaaaattgattaaGAAGCAAGAAGAAG
AACAGAAGAAGCTCGAAAATAAACAAAGCTCCGAACAACCAAAGGAAAAA
GAGGCTGCTTACGGAGATTTCAAGAAGTTCAACCCGGCaggagaaaaaga
aaagaaagaaggcAGTAAAATGGACTGGTTTGACATGAAGGATATGGACC
ATGATCAATCCATTCGAAGTGAATGTACTGACGCCGCATGCACGGTGGCA
GGGGCCAGTGCCGTACACGAGAGCAAAGAGGAGGAAGCTCTTAATGCACT
GAAAATGGCAAAAGGAGAGAAAGACGAGAAAGCAAAAGAAGATATAAAAC
CTGAAGACAAAATTGTTGAAGATAAAAAACctgaaagtgaagaaaataaG
AAACCCGAGGAGGAGCCAAAAGTGGAGGAGACGAAAAAACCTGAGCAGGA
GCAGAAAGTAAATGAAGCACTTTCCAAAGAAGGAGAGAAACCACTCTCTG
AGGAGGAGCACGGAAACAAAGGAGAAGGGTGCACCGATGCTGCTTGTTCA
GCCGCTTTCGAGAAAGACAACAAGGGTGAGAGTGATGGCCAGAAAATGGA
GGGGAGCGAAATGAAAAAGGAAGGAACGTCAGAAGAGAACGGTGGAGAGC
AAACAAAAGCTAATGAGAAGGAGGAGGGAAAGGAAGAGGATAAAAAGTTT
GATCCAAAAGAAGATGATAATGGTCCCAACAAGAATTGGCTTCCTAAATT
TTCAGAAGGCGAAAGAGATTCAAAAGATGAGAAATCAAGTGACGAAAAGG
AGGAGAAAACAAAATCGAACGATTCACAAGAATTATTAATGGATAAACCA
TCACAAGACCAAAACGAACAGAACAAAACAACCGAGTTTGATAACAAATC
GAGTACGAAGAAAGAGGAAGATgacgaaaaaaatcgaaaagaagaagaaa
ataaagaagaaacgAAAAGTCAGTACGAAAGAAGCCCACAGGATACTTCA
AATATCGCTTGAAAATGAGATTTGCTTGTCTGATGAACTAGGCAGTGATA
TTGACTGTATGAATGGACTTTTATTGTAGAGGGTATGAGGTGTGAACAAT
AAACACttcaaaattgaccaaaaaggaCTGTAAACCTAGTTTTAGATCCC
AACCAACCTagaatattttttagaaaaagttcttctttaaagcttttttc
acatgtacgaaAATTCTACTAAAGACCTTGAAGGGTGGGAATTCacctaa
gcttacgtagtgtaTTAAGGCCTTATGTAGAATTTGCTTGcgctcaaaaa
gttttgaacggaaggaaaagtcacgtaagaccctcttaatcaacaaaaac
tctacataatgtcggggaaattcccaaaagacagccttacgaacaatttt
ccgtaaggtcttaaataaaattttacgtacatgtgaaaaaagcttaagtG
TCGCAGATTTCTTGGAGTTAAATCTTATCACttcaaattttatataaagT
TCATATATTTCGAAGGGgaaattttatttagtatttcaaTTCAGCACAGT
CTTTTTAAGAACTTTTGAATCTCCATGATTTCAAACCGGGCGAAAGATTA
CTTCGATCTTAATCCTTCTGAATGGAATATAAAATATTATCTCTTGagca
ttttgggtttttttttgaaagcatAGTTTTTGTAATTTCAGTATACTCTC
CAAGAGGTTTAATGAGATTTCAGGGTTAGGAGAATTATTTCTTAGCCAAT
TTAGAAAATTATCAGGTTttaataaaaccttaaaatgtttgCTTTGTATA
TAGCCATATTTATATGTCaagacaaattttatttttgttgaaatatttta
ggattttttaaaagattgaatGACATAAAATTCACATCAATgtcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009190-exon-sc0000091-1491911889:190710..190922 | TCONS_00009190-exon-sc0000091-1491911889:190710..190922 | Clytia hemisphaerica | exon |
| TCONS_00009190-exon-sc0000091-1510915933:190710..190922 | TCONS_00009190-exon-sc0000091-1510915933:190710..190922 | Clytia hemisphaerica | exon |
| TCONS_00009190-exon-sc0000091-1575043694:190710..190922 | TCONS_00009190-exon-sc0000091-1575043694:190710..190922 | Clytia hemisphaerica | exon |
| TCONS_00009190-exon-sc0000091-1491911889:190994..191023 | TCONS_00009190-exon-sc0000091-1491911889:190994..191023 | Clytia hemisphaerica | exon |
| TCONS_00009190-exon-sc0000091-1510915933:190994..191023 | TCONS_00009190-exon-sc0000091-1510915933:190994..191023 | Clytia hemisphaerica | exon |
| TCONS_00009190-exon-sc0000091-1575043694:190994..191023 | TCONS_00009190-exon-sc0000091-1575043694:190994..191023 | Clytia hemisphaerica | exon |
| TCONS_00009190-exon-sc0000091-1491911889:191543..195054 | TCONS_00009190-exon-sc0000091-1491911889:191543..195054 | Clytia hemisphaerica | exon |
| TCONS_00009190-exon-sc0000091-1510915933:191543..195054 | TCONS_00009190-exon-sc0000091-1510915933:191543..195054 | Clytia hemisphaerica | exon |
| TCONS_00009190-exon-sc0000091-1575043694:191543..195054 | TCONS_00009190-exon-sc0000091-1575043694:191543..195054 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:190710..195054 + |
Blast
The following BLAST results are available for this feature:
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