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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009241 ID=TCONS_00009241|Name=TCONS_00009241|organism=Clytia hemisphaerica|type=transcript|length=1890bpRun BLAST on NCBI transcript from alignment at sc0000091:63128..74700- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009241 ID=TCONS_00009241|Name=TCONS_00009241|organism=Clytia hemisphaerica|type=transcript|length=11573bp|location=Sequence derived from alignment at sc0000091:63128..74700- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009241 vs. Swiss-Prot (Human)
Match: ARSB (Arylsulfatase B OS=Homo sapiens GN=ARSB PE=1 SV=1) HSP 1 Score: 379.407 bits (973), Expect = 3.191e-123 Identity = 203/476 (42.65%), Postives = 292/476 (61.34%), Query Frame = 2
Query: 230 AEKPPNIVLMVADDLGWTDVGFHGSDQIPTPNIDKLAKEGIILNNYYVQPICSPTRSALMTGRYPIHTGMYHNTIYVEEPWGLPLEEKILPQYLKDMGYATHAVGKWHLGYFAKEYTPTYRGFDSYYGYYCGAEDYFNHARSGADFPSFYGLDLHR---DYHGMSEPDRSQKGNYSSNLFASEAIDIIEKHQEEQPLFLYLPFQNVHVPLQAPKETIDKFSYIEDKNRRTFAAMMSKLDDAIGQVHQALEEKGILDNTIIIFTSDNGAISTEGFSSNYPLRGVKHMVFEGAVRVPAFINSPLLKRSGVTSMQMMHVTDWLPTIVNLAQGKI--TKEIDGFDQWKTLQSDVESPRKEILLNIDHFF--------NQEALIAGEWKIIVDSLYEDGLYS----DGWIKAPGYNATG-----KATSVIKCGPKPDKTTHCNETHCLFNLQNDPCEYNDVSSQYPEIYQQMKNKLEDYKK 1591
A +PP++V ++ADDLGW DVGFHGS +I TP++D LA G++L+NYY QP+C+P+RS L+TGRY I TG+ H I+ +P +PL+EK+LPQ LK+ GY TH VGKWHLG + KE PT RGFD+Y+GY G+EDY++H R L++ R D+ E K YS+N+F AI +I H E+PLFLYL Q+VH PLQ P+E + + +I+DKNR +A M+S +D+A+G V AL+ G+ +NT+ IF++DNG + G +N+PLRG K ++EG VR F+ SPLLK+ GV + +++H++DWLPT+V LA+G TK +DGFD WKT+ SPR E+L NID F N A + + S + +++ W GY G + + P D T +T LF++ DP E +D+S +YP I ++ ++L+ Y K
Sbjct: 41 ASRPPHLVFLLADDLGWNDVGFHGS-RIRTPHLDALAAGGVLLDNYYTQPLCTPSRSQLLTGRYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSEDYYSHERCTL----IDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAIALITNHPPEKPLFLYLALQSVHEPLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQTLAG-GNNWPLRGRKWSLWEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGHTNGTKPLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPCPRNSMAPAKDDSSLPEYSAFNTSVHAAIRHGNWKLLTGYPGCGYWFPPPSQYNVSEIPSSDPPT---KTLWLFDIDRDPEERHDLSREYPHIVTKLLSRLQFYHK 507 The following BLAST results are available for this feature:
BLAST of TCONS_00009241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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