Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009217 ID=TCONS_00009217|Name=TCONS_00009217|organism=Clytia hemisphaerica|type=transcript|length=1099bp
GTCCACGATGCTCTGGTAAAGACAGGCATGATCAATAACACAGTCATCAT
TTTCACCACAGATAACGGAGGTCCTGCTAATGGTTTTGACGCAAACTGGG
CCAATAATTTCCCTTTAAGAGGTGTCAAGGCTACGCTATGGGAAGgAGGT
GTGCGAGCGGCTGGATTTGTTCATAGTAACTTGTTAAAGAAGCCAGGTCG
AACATCCATGGACTTAATACACATTACCGATTGGGTTCCAACGCTGGTCA
ATTTAGcaggtggatcttcaaaagctCCCTTTGATGGTGTGGATCAATGG
CCTTGTTTATCTGAAGGTCTACCTTCTGCTAGAGAAGAGATTTTGCTGAA
TATTGATCACCATGACTGGAAAAATAGAGCTTTACGAATGGGTGATTGGA
AAATTATACAAGAAACTGGTACATGGGACGGTTGGTATGCCCCGCCAGGG
GTTATTGGTATGGAAAACAATATTCTGGTTGACGACCCTTATATCACATT
CCAAAGTCAACCAGTGGTCAATTGTGGTGAAAAACCTGCCAATGTTTCGA
GCACGTGTTTTAAGAAACCCAATTTCTGTTTATTCAACATCATCGACGAT
CCTTGCGAATATCATGATTTGTCAGGCAAATATCCTGAACTTCTGGAAAC
AATGAAGAAAAGATTGCAATTTTATGAGGATAGTGCAGTTCCACCAAGAA
GAAATGAGACAGGAGATCCCAGAGCAAACCCAAAGCTCCATAATGGTGTA
TGGGTACCTTGGATTACTCTACCTTAAATCTCACAGAaagcaaaaagtca
aaatattaaatgaaaatatcaTTAATTGTAGAGCTGGTAGGATCATAATT
AAAACCTGACATCTAATGTCATCTAGTTTTAGACGTAGTTCTATATTCGT
CGTCGAAcgatgtattttatattttaacaTTCCTTGTATTCCTTGTAAAC
ATGTGTTGTTTGTAGCGTTGATGGATAAAGTTTATCAAGAATTCAACCCT
TCCACTGGCAATCCCAAAGTGTTGGATTTTAAGGAATCAGtcaaaaagaa
cttttttgcaGCTACAGATATAAAGAGCATTCGAAAAATTGTCTTtaat Run BLAST on NCBI transcript from alignment at sc0000091:32902..40592- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009217 ID=TCONS_00009217|Name=TCONS_00009217|organism=Clytia hemisphaerica|type=transcript|length=7691bp|location=Sequence derived from alignment at sc0000091:32902..40592- (Clytia hemisphaerica)
GTCCACGATGCTCTGGTAAAGACAGGCATGATCAATAACACAGTCATCAT
TTTCACCACAGATAACGGAGGTCCTGCTAATGGTTTTGACGCAAACTGGG
CCAATAATTTCCCTTTAAGAGGTGTCAAGGCTACGCTATGGGAAGGTACG
GCCCGAGCGCTATTCCAACTTCGTTTCAGCATCCATTTAACGTTTTAAGG
GCGTTATAGGCGTTAGCTAGACGTTGTTTTGATATTTTCAGACATCTTGG
AGAAGGTCTTACCTGTTGCTGTATGATTCTTAAGTCGAATTCATAAGATC
AAAAGCTCTCCTTTAAGCTACTCAACCACTTTCAAATTACTTGCAATTTC
ATCTATTGAATCTTGAACGAATAAACTATTTTTTAAGAAGTCAGAAAACC
AGCGAAATTTTACGGACCTTTGACTTTTTATTATTTTAAGGAGGTGTGCG
AGCGGCTGGATTTGTTCATAGTAACTTGTTAAAGAAGCCAGGTCGAACAT
CCATGGACTTAATACACATTACCGATTGGGTTCCAACGCTGGTCAATTTA
GCAGGTGGATCTTCAAAAGCTCCCTTTGATGGTGTGGATCAATGGCCTTG
TTTATCTGAAGGTCTACCTTCTGCTAGAGAAGAGATTTTGCTGAATATTG
ATCACCATGACTGGAAAAATAGAGCTTTACGAATGGGTGATTGGAAAATT
ATACAAGAAAGTATGATGGTTTTGATTTTTTTTCCATGCTTTCTTTTGTA
CGCTAGCAATACAGCATCAGTTTTATTGAGTTGTAGATTAAAAAAGGTAG
TGTCCTTAGCGAAAAGAAAAGGTGGGATAAGATTATTGTTTTCTATTCTT
ATTGATATTGTGTGTTTCGTTAGATACTAACTACAAAATATACAAGTGTC
GCTGTATAATAACGTGGTCAATCAATTTTCCCCGACGGTCAGATTCTTTT
ACTTTCAAGTATATTTTTGAATGTGAAAATATTTTTCTTCTAAAAAGCTA
TTTTAATATACTGTAATCGATTTTAATCAATCATCAATGTTGAAACAATT
AATGTTTATTGTTCTTGCCTTTTAAAAATTAGATAAACAATATTATCTCC
TTTATCTTTCCTTTTTAGCTGGTACATGGGACGGTTGGTATGCCCCGCCA
GGGGTTATTGGTATGGAAAACAATATTCTGGTTGACGACCCTTATATCAC
ATTCCACAGTCAACTAGTGGTCAACTGTGGTGCTAAACCTGCCAATGTTT
CGAGCACGTGTTTTAAGAAACCCAATTTCTGTTTATTCAACATCATCGAC
GATCCTTGCGAATATCATGATTTGTCAGGCAAATATCCTGAACTTCTGGA
AACGATGAAGAAAAGATTACAATTTTATGAAGATAGTGCAGTTCCACCAA
GAAGAAATGAGACAGGGGACCCCAGAGCAAACCCAAAGCTCCATAACGGT
GTATGGGTACCTTGGATCACTCTACCTTAAAACCAAAGTCAAGAAATTGA
TTCTTAAAAGGATTATTGTTATTCGTAAGGTTTGTAGGGTCCTAGACCTA
ACACCTAGAGCCACTAAAAAACTGTGCTACATTTCGTCGTCCATCGATGC
ATTTTTGAATTTAGACTTTAAAGGGAACGACGCATGGTATATTTATGAAA
TGCTGATCTAGCATTGGCACAAACACCCATACGGAGGAGTATTTAGGAGT
GCTGGATCATAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAACGTCTTTGCA
ATCTTTTTGTTTACATTTTGTCTTCATTCACTTTCGTTTACTGTTGAAAA
CATAACAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT
TACTCCTTATAATTATGTGTAGTTTTTAGAGTTTATGTGTAAAGAGTTTA
TTTAGAGTTTAATCGATTCACTTTCACTTCACTGTAGGAAGGGTTGTCAA
GAGCAAGGTGTTAGATTTTCAAAAGAACACACATTATGCTCAAGAATCAA
CTTGTTGGTGACGTAATTGAAGTGTGTGTCATTCATTTTCTCTTTAAATG
TATATCTTTAAACTCTCCTCTCCTTTGGACGGTGGGAACCTTTTTTGAAA
ATTTTGACTTCGCAATTCCTACTCTTACATATACCTAAAAGATATATAAT
GATGACAAAAACAGACGATCTAATCCTTGGGTTGAACATTTGGTGCATGA
TAGAACGGAGTAATAAAAAGTGCTATTGATTAATACTTTAAAACTAACTT
TTAGCCTGTAATAAGCCTGTATGATGGCGGAGTACTTTCTCATATTTTAG
AGATACAGACACACAAACTTTTCTACTCAATGACATGCTCCTAAGCTCGA
CACACTGATTTTTTATACAAGATGACATCATCGATATGTATGCATACTTG
ATACTGCCAAAAATACAATTAAAATCTAACTGTCATAAGGTTTTTCTAAT
CTCCCCATGTTATGATGTTGTCTTTAAATAATTTCTCACCGTTTTTGACA
ATTTTTCAGTTTTATTTCATATATGTCATTTTGATACGCATTTCAAATTT
TTAGATAAATACAATGTGAGTGCGATGTAACTTAGTGAGAAAACATTTTA
ATTATAAAGTCTTGTAACAACTTTCTGTCATATGATCTTGATCTTTTTGA
GCAAGTTTTTTATTTTACGTTCATTGCTAACAATTTTTTTCAGTTTCAAC
CTTGTGAACTGTATAAATTTGTTGTAATATCTCCACACATAATATTGAGA
TTTATCTTAATAGACAACTCTTAACACAGGGTAAATAGTTAAATGACAAA
ATGAAGGCAATTTTATGGCAATTTTTCTTGGTAGCTTCCCTCGTTGGTCA
AATTTTGTGCGCAGAGAAACCAAACTTTGTTATTATCGTAGCTGACGACT
TGGTAAGAACACGACAAATTGAACCATAGGTAAACCCAAAAATCTAATAG
AAGAAAGGGATGCTATAATCCTGAAGCAAAATCTTAAGATCTCAAATGTG
CGAACCTTAAGATCTCCAAATTCTGTTGTAATTTTTTACAAATTCATGAA
TCGTAGAAATTGAGTCCCTTAATTGAAAGGGGCGTTAATTCAGGGGTTGG
ACAATCTCACCATTCTACAACAGACCTATGACCCTGGGCTTAATAAAATT
TGAAAAGCTTTGGTCAATGAGAAAATCCACCTAAACTAATTTGTGTTAGC
CTTTTCTAATGTCTGCTTTTCCACCAAAGGGATGGAATGATGTCAGCTTC
CACGGATCAGATCAAATCCCAACACCTAACATTGATAAATTGGCAAAAGA
AGGAATTATTTTGAATAATTATTATGTTGCACCTATATGCTCACCATCTC
GGAGTGCCATCATGACTGGGAGATACCCTATTCATACAGGTTGATTATTT
TCTTATCAAGTTCATAGGATTTAATTTCAATAAAACACGAAAATTTCTGT
ATCATTATTACAAGAAATACCAAGCAAGGTTTTCAAGCTTGCTAACGTTT
AAATTTCAAGTCAGTACTCTCAAACTGACCAGCGCCAGTTGCAAAAGCCA
TTGACAAATAAGAAAGAATGAAATGTTTTGAGGGGGTTGGATATGGTCTA
ATTATAGTATTTCTACTTTTGATGTTCAGGTATGCAAGTAAGCACAATAT
TTGCATATGACACATGGGGTGTCAGTTTAAATGAAACATTCTTACCAGAG
ATTCTCAAAGAACAGGGATATGCAACGCATGCTATCGGCAAGGTATGTCG
TGTATTAACATTCGGAGATTTTTTCATCCTGTGAGAGATGCTTTTTTTTC
TTTGTTTGACTTATTAGTATTGCACGCGTTCTATGATTCGAGAAGCAATG
TTCACAATCTTTTAGAGAGTCAAAGTTGGATCTTCTTGAGAAATGAATGC
ACTCTACCCCAAGAATGAAATATATAATCCATAAAATCCAAACTTTCCGT
CATTTTATTTCTTAGTGGCATGTTGGTATGTTTGCGAAAGAATACACTCC
AACATACAGAGGCTTTGATTCGTTTTATGGCTACTACCTTGGGAAAGCTG
ATTATTGGGACCACTCCAATAACGAGAAGTACTGGGGGCTCGATCTACAT
GACAATTTAGAGGTCAGTGGTCCTGATGTTATTGCCCACTACTCCCTTTT
GAAATCAAAATTGGTGTCATGAGCTTCGTCAATATTGTTTGTTTTATGTT
CCAGTTGATTCCAACTTCACCTGAGACCTTCAAACAAGGTAGAAAAGATA
CTATGAACAATGACACTCATCGAGAAGCTCTAAGGGCTATAAGCTCAAAG
CTAAGAAATAATTAAGGTTAGGGGGAGGGGCCAATTCTGTTATTACCGCA
ATACTGTCTTCCCTGAGTTTTACTGGAGCGTCCGAAGATATCACCAGTAT
CAGTACTTTCCTGCTATTAATAACTTTCTGATTTTTTTGTCATTTTAGCC
TGTATGGACACAATGGGGTAACTACAGTACGGAGATGTATACAGCAGAAG
CAGAAGGTCGTATACACAATCATGACCAATCGAAACCACTTTTCTTATAC
CTCGCATATCAAGCGGTTCACAGTGCTAATAGGGATGCAGATGCACTGCA
AGCCCCCGATTCATGGATACGAAAGTACAATCACATTCAGCACGAAGGAC
GTAGAAAATTTGCAGCCATGATGGGTTATATGGATTATGGCATTGGAAGG
GTAGGAAGCAAAAACGTTTGTAACATTTGGTCGACTAACCACCATATGAA
TTCTGGGAATTAAAAAACAAAAGACTAATGCCACTCTACTGTCAGCTACA
TTTCTAGCCAAACGTTGTAAAAAGAAAGTAATTATTTTCTTTGAAGTTCA
AACCTTTCGATACAAAACTTCGAAGCATTGACTTACTTTCTTGTAACCGC
AGGTCCACGATGCTCTTGTAAAGACAGGCATGATCAACAATACAGTCATC
ATTTTCACCACAGATAACGGAGGTCCTGCTAATGGTTTTGACCAAAACTG
GGCAAATAATTTCCCTTTAAGAGGTGTCAAGGCTACACTATGGGAAGGTA
CGGCCCCTGCAAATGTTCATTAGACTTCTCTCTTTAATACCCATAAAGGG
TGTAAAAAGATTCTTGAAAATGCCCCCCCCCCCCGGGAAAAGGCGAAAAT
CTGTGAGATACCCTTGCAAAATTTATCTTCTTGATATCATTAAAGTGAGG
GTAGAGGAACTAAAATCAGTTTTTCACCCCTGGAATTTTCGGAATAACGT
TAACCCTTTAGAAATACGAATAAGCTTTCGGGGGGGGGGGGGGCATTTTA
AAAAAGCTTTTTCCCCCCTTTTTTTTTAAAAAACCCCCCCCCCCCCTGGA
AAATGTCAAAATTTGAAAAAATCACTTTCAAAATTTTTTTTTTTTTTTAA
AAAACCCCCCCCCCCCCTGGAAAATGTCAAAATCTGTGAGATACCCTTGC
AAAATTTATCTTCTTGATATCATTAAAGTGAGGGTAGAGGAACTAAAATC
AGTTTTTCACCCCTGGAATTTTCGGAATAACGTTAACCCTTTAGAAATAC
GAATAAGCTTTCATTCGACCGCCTGGACATTTTTCTTACATTACCCGCTG
GAAACGATCCTCCAATGGAATGCTATTTCGGCGTCCACCTAACGGTTTAT
AGATGTCATTTAGTTGATACTGCATGATTTCATAGTCGAATTTAAAAGCT
CAAAATTATTCTTTTTGGCTTTATCAACTTTAACATTTATATTGATGTTT
TTTCTTTAAAAGACTTTTTCAGAAAGTCAAAAAACCGGTGCATAAATTTA
TGTTGATCCCTTGGATGTTGAAACTGAAGGTCCTTACTCTCTTTCACAAT
CTTCTAGGAGGTGTGCGAGCGGCTGGATTTGTGCATAGCAATTTGTTAAA
GAAGCCAGGCCGAACATCCATGGACTTAATACACATTACCGATTGGGTTC
CAACGCTGGTCAATTTAGCAGGTGGATCTTCAAAAGCTCCCTTTGATGGT
GTGGATCAATGGTCCTGTTTATCTGAAGGTCTACCTTCTGCAAGAGAAGA
GATTTTGTTGAATATTGATAACGATCGATGGATGAATAAAGCTCTGCGAA
TGGGAGATTGGAAAATTATACAAGAAAGTATGATGCATTTTATTCTTTTT
TTTCATATTGTCTATGATATAGGTTGGTTGCTGAGCTAAATGATTATTAG
TCCATGAGCTGGGGGTCAAAATAGGCTTAATGAACCCGAAATCTTTCGAT
TCCATACGTCTTGACCTTGGTAACATAGAAATTTCCACTCTACATAAAAT
TTGGAAACGTTTGGTATATAATATGTCTGGTAACCTCGTTGAGCCCAAAG
TCTCAAAATTTGACCCTCAGCTCATGGGCCATATTGTTGAGAACTTTCTT
CAATAGCTTTTAAAAATGACAGAAAAGATTGTGCTCTTCTTTGTTTATCC
TTTTTAGCTGGCACATGGGACGGTTGGTATGCCCCACCAGGGGTTATTGG
TATGGAAAACACAAATCTGGTTGACGACACTTATATCACATTCCAAAGTC
AACCAGTGGTCAATTGTGGTGAAAAACCTGCCAATGTTTCGAGCACGTGT
TTTAAGAAACCCAATTTCTGTTTATTCAACATCATCGACGATCCTTGCGA
ATATCATGATTTGTCAGGCAAATATCCTGAACTTCTGGAAACAATGAAGA
AAAGATTGCAATTTTATGAGGATAGTGCAGTTCCACCAAGAAGAAATGAG
ACAGGAGATCCCAGAGCAAACCCAAAGCTCCATAATGGTGTATGGGTACC
TTGGATTACTCTACCTTAAATCTCACAGAAAGCAAAAAGTCAAAATATTA
AATGAAAATATCATTAATTGTAGAGCTGGTAGGATCATAATTAAAACCTG
ACATCTAATGTCATCTAGTTTTAGACGTAGTTCTATATTCGTCGTCGAAC
GATGTATTTTATATTTTAACATTCCTTGTATTCCTTGTAAACATGTGTTG
TTTGTAGCGTTGATGGATAAAGTTTATCAAGAATTCAACCCTTCCACTGG
CAATCCCAAAGTGTTGGATTTTAAGGAATCAGTCAAAAAGAACTTTTTTG
CAGCTACAGATATAAAGAGCATTCGAAAAATTGTCTTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009217-exon-sc0000091-1575043694:40448..40592 | TCONS_00009217-exon-sc0000091-1575043694:40448..40592 | Clytia hemisphaerica | exon |
| TCONS_00009217-exon-sc0000091-1575043694:39883..40152 | TCONS_00009217-exon-sc0000091-1575043694:39883..40152 | Clytia hemisphaerica | exon |
| TCONS_00009217-exon-sc0000091-1575043694:39393..39474 | TCONS_00009217-exon-sc0000091-1575043694:39393..39474 | Clytia hemisphaerica | exon |
| TCONS_00009217-exon-sc0000091-1575043694:32902..33503 | TCONS_00009217-exon-sc0000091-1575043694:32902..33503 | Clytia hemisphaerica | exon |
| TCONS_00009217-exon-sc0000091-1510915933:40448..40592 | TCONS_00009217-exon-sc0000091-1510915933:40448..40592 | Clytia hemisphaerica | exon |
| TCONS_00009217-exon-sc0000091-1510915933:39883..40152 | TCONS_00009217-exon-sc0000091-1510915933:39883..40152 | Clytia hemisphaerica | exon |
| TCONS_00009217-exon-sc0000091-1510915933:39393..39474 | TCONS_00009217-exon-sc0000091-1510915933:39393..39474 | Clytia hemisphaerica | exon |
| TCONS_00009217-exon-sc0000091-1510915933:32902..33503 | TCONS_00009217-exon-sc0000091-1510915933:32902..33503 | Clytia hemisphaerica | exon |
| TCONS_00009217-exon-sc0000091-1491911889:40448..40592 | TCONS_00009217-exon-sc0000091-1491911889:40448..40592 | Clytia hemisphaerica | exon |
| TCONS_00009217-exon-sc0000091-1491911889:39883..40152 | TCONS_00009217-exon-sc0000091-1491911889:39883..40152 | Clytia hemisphaerica | exon |
| TCONS_00009217-exon-sc0000091-1491911889:39393..39474 | TCONS_00009217-exon-sc0000091-1491911889:39393..39474 | Clytia hemisphaerica | exon |
| TCONS_00009217-exon-sc0000091-1491911889:32902..33503 | TCONS_00009217-exon-sc0000091-1491911889:32902..33503 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:32902..40592 - |
Blast
BLAST of TCONS_00009217 vs. Swiss-Prot (Human)
Match: ARSI (Arylsulfatase I OS=Homo sapiens GN=ARSI PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 6.560e-46 Identity = 106/272 (38.97%), Postives = 137/272 (50.37%), Query Frame = 1 Query: 10 ALVKTGMINNTVIIFTTDNGGPANGFDANWANNFPLRGVKATLWEGGVRAAGFVHSNLLKKPGRTSMDLIHITDWVPTLVNLAGGSSKAP--FDGVDQWPCLSEGLPSAREEILLNID------HHD--------WK---NRALRMGDWKIIQETGTWDGWYAPPGVIGMENNILVDDPYITFQSQPVVNCGEKPANVSSTCFKKPNFCLFNIIDDPCEYHDLSGKYPELLETMKKRLQFYEDSAVPPRRNETGDPRANPKLHNGVWVPWIT 768
AL + G NN+VIIF++DNGG +NW PLRG K T WEGGVR GFVHS LLK+ RTS L+HITDW PTLV LAGG++ A DG D WP +SEG S R EIL NID H W A+R+G+WK++ + W P Q + N+ + LFNI DP E DL+G+ P+++ T+ RL Y +A+P R +PRA+P + G W PW +
Sbjct: 280 ALKRYGFYNNSVIIFSSDNGGQTFSGGSNW----PLRGRKGTYWEGGVRGLGFVHSPLLKRKQRTSRALMHITDWYPTLVGLAGGTTSAADGLDGYDVWPAISEGRASPRTEILHNIDPLYNHAQHGSLEGGFGIWNTAVQAAIRVGEWKLLTGDPGYGDWIPP---------------------QTLATFPGSWWNLERMASVRQAVWLFNISADPYEREDLAGQRPDVVRTLLARLAEYNRTAIPV-RYPAENPRAHPDFNGGAWGPWAS 525
The following BLAST results are available for this feature:
|
