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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009112 ID=TCONS_00009112|Name=TCONS_00009112|organism=Clytia hemisphaerica|type=transcript|length=425bp
TGAATACTCAGTCGAAATTGCCGAAGCTGGTGGTTTAACATCGAAGTTCT
CCACCATATTGGTTAATTGAAAATGCAATGTTGCAAGACCGTCAACTTGA
AATCTTGTCTCATATTTCTGCACTTCATGGTTCTTCTCACAAAAATAAAA
TAGCTGAATACATTTGTTTTCTTCATCCACTAGAATCTCTATTTGATCGT
CAGTAAAGCTTTGAGGACCATCAGTCACATTTTGAGATTTAGTTTTGACA
GTAATACTGGGAATATCATCTCGTACTGCAACCCAGTCGTCATCTAGTAA
CTCCATCTTGTGCTCATCACAAATAAACCTTTcatcaaaTTACCTTGAAT
TAATTTCCAAACCAAAACTGATTAACTCTCATCTCTAAGTTTTCTCTCAA
GAAGTGCAAAATTTGTAAGTAAAAG Run BLAST on NCBI transcript from alignment at sc0000090:593198..598273+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009112 ID=TCONS_00009112|Name=TCONS_00009112|organism=Clytia hemisphaerica|type=transcript|length=5076bp|location=Sequence derived from alignment at sc0000090:593198..598273+ (Clytia hemisphaerica)
TGAATACTCAGTCGAAATTGCCGAAGCTGGTGGTTTAACATCGAAGTTCT
CCACCATATTGGTTAATTGAAAATGCAATGTTGCAAGACCGTCAACTTGA
AATCTTGTCTCATATTTCTGCACTTCATGGTTCTTCTCACAAAAATAAAA
TAGCTGAATACATTTGTTTTCTTCATCCACTAGAATCTCTATTTGATCGT
CAGTAAAGCTTTGAGGACCATCAGTCACATTTTGAGATTTAGTTTTGACA
GTAATACTGGGAATATCATCTCGTACTGCAACCCAGTCGTCATCTAGTAA
CTCCATCTTGTGCTCATCACAAATAAACCTTTcatcaaaatatctaaaat
gaaaaaaggaatttgtttaaaaatcaaGGGATTTGAGCTCTCTTATAAGA
TGATtctgttaaaaaaatatcacatgttgaaatgtttcaattttacaaAC
TAGAATCTTAAATGTATCTATTAACCACTCCTTATTCGATGATGACTATG
ATGATAGCAACATAAAATTTGCAGTGTTGTCATAGTTCGCAACCCTTtct
taaaaattgttcttaaaaaattgcagaaaggggggggggtaatagAATTT
CTTGAAGAAAGGGGGAACTTTTCAAAAAGGGGGAGGTTCATCTAGAAAGG
GGAGGTTAAACGCGTTAGCAAAGGTCTTAGAGCACATCTTTCTAAATTTC
TAGTTTTGCAGTCTTGGACTGGGTTAAAATcctaaaatttttcttgctcg
ctttgCTCACTATcttttttcaccaattttcagaAGGGATATATACTACA
AAATAAACTCAAAAGCACCTCTTTCTAGCGAGAATATGCTAACATTTTAG
TTAATGGTGCATGATGTCTTGTGAAAGTGGGAAAAAAATCTTGACGTCAC
CAGGAATTTGAGGAGGATTCCATCAAACTTTTGGAAAGGAGTAGAACCTA
GAGTAGGGGGGTTGTTCTAGACTAAAGGGTAGTGATCTCCTTCAGAACTA
TGATTGTAttgtttaaaattaaaaaatgccaACATGGACAATTAATTTTC
TAATAATGACCAACCTTGataataagaactttttgaagtctaaaaataaa
gtctctagagaagaatttccagaaaaaagtcatattacataaataaaatc
aaattccAGCTTGTATTTTGGTGCATCTTACAGTCTTATTTTGACGAGAC
TGACTCGAActctaaaaaaaattgatctGTTGATTCTACAGTCAGACAGT
TGAATTGAAGGTTCAAGTTcaacagaaaataaaataaaattctcagATAG
CTATGTAAAAAAAGGTACCAGTGTTTTCTGGTGTTTGCAGCCTAAGTTTG
ATCACTTATACATACTGAGAGAGCTCCCAAATCTTGGAAATCTGACAAGT
TCTTTAATCTGGGGTCTACTGGTCTACtgtaattctgacacccttctttt
aGAGTTGGGATAATTAAAAAGGTAAGATCAGTCAGGGCTTCCTTGGTCTT
TTTNAGAGTTGGGATAATTAGAAAGGTAAGATCAGTCAGGGCTtccttgg
tcttttttaacattagctcggatagaataaaaacgtGAATCAAAACATAC
CTTATCAACaaaaccaaaccttctgtcttgcgtttactctttccttccca
acaactttcacttttggttatgtaggttttaaaatccacaagtaatgaac
cttttatagctttatctgaataaatcttgttgaaaaccttctgtcaggtt
tcattccacttacgttttttatccacatgGTGCACCAGTTTCCCTGATTT
TCCAATACAGtgattaaaaattggaactttcccatGGGCGCGATTGGGTG
TACCACCatcacaaaatatttttcatgaaaatttactGTATACTGCCATG
CATACCGTCAACTGATGCTAGgaacgattggttgaaacatgggactattg
atatctggcctgtattttcacttactgttaaattttttttgataatatac
atcaatcatactttctgtcataacatgtcacaataactttcactgatagc
gcaccttttaacttttttgttttcatttaaaatgactgGACGCTGATTgt
agaattagagaacgcccccACCTAatcgcctatcgcccgatgggattaac
aaataacgagtgcgtaactttctctagtccaataaggctgcaggatttga
gtcatgtgacatctctattgaaaaacctgCGCAGAAttaaatagaaatac
agggggtcacactactggctacaggaactgaaaacaaacaattaaggcaa
tattttttgttttttgaaggacaaaaggtaaaggaagctttactgaagga
gggataaggctgggactatctatttaaaagaaatgaacaaaaaaaggcac
ttttttgggtgataaataagattttacttagaaactttaattctcttacc
cccgtcttggGCTCCCCttatatgagcaagggaaccatgttggccgtacc
cctactgaaaatttcagatcaaaacaaacttgatgaaaattggaaaagct
ggtttttgactgtttctgatcctaaagtgctttttttttggtaaaagcta
tgcaatatatgtttggatttctagaaagcttacccattcattgtcaatat
attttttatttgaaagtaatctctttatggaataaaaagatatagtcaaa
tcttgtagggtcatttttcaaaaattttttgccaaaatcaattttcacat
ttcgccattttaccctacgcaaacacACGTGAGTCCcatagagcagttga
cggtacaaaaGAGAAATCCTGTATTTTCTAATACGccattcattaactca
aatcaaatggcttcagacagtgtagctggaacctcgatattccaggatta
gaaaaagctatacctgttatcttttttctttaaagaatcaacaagccatc
aacattgataaatTACACACATTTCCTCAGGAacatttaaaattatctgc
cattatgactttcttgaagccgttccgaaattaaccaatcgggttaggta
ttggaattcctatgggagttcttttccaagatttgtaaattagctaagtc
agcaaaaaaacttttcctgggggtttgaggaataaacagaactgttatca
tttgttttttattcaaccatatattcaaatttgtgctcaaaaatacttaa
ataaataagttgataatattcaatatactatttgcatctctcagaaaata
aacacttacagaacgacatagtttctcatttggaatacccccgtgtttgg
accattctattgtgggcgaaaaatagggcggaaactaagtagcaccctca
atgcaagattgccgcctcatctttattcacCTGCGTGAAaacgcgagcta
atcatttttttctcgcaagCTCAatgggaaaaggaaagtgatcgatattc
tttgaaggaaaaacgtcccaaagaccaaaagatgtattttgttgttgaga
atcgatcatgtgaagatgaaaaaatttctgctatgcgtttttttcggaac
gctgaaaaactctaatttcgatcttccttNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcttccttaaggtaaagagg
ttgcgagatttgggttagcgaggcaaaaattgctaaaaaactggtaaaat
cgtaatcctcaaaaatcgaaggtCCAGCCTCACTGTcagaggtttggtga
aatggtggtgccGCCATggctgaattgccgtcccatgttttgtcagatag
tcccaagttagagcagttgacggtattttgtcaacatccttttcattgga
tggATTGAACTACCACAAATTCAACATTCTTTCTATGAATTATTCCTCGA
AGATATTTAAATTAGTTAGtataaatacaaaaacatgCAAATTCTAGATA
GAAAATGACTGATCGCTGCTGAAAGTTGAAACACCCCAGATTAAAGAACT
CGTTGTCAGATTTCCAACATTTGGGAGCTCTCTCTGTATGTATAAGTTGT
AAAGTAATCAAACATACACCGTGAGATtggttgggtaacttgcatcagtg
gaggctaacatgcatagccctcaaatgaaagacctggctggtcattaaag
tACAAaggtaaatcaaaacaaaaatggtagagtagagctgcgagcgaagc
tgcgtagttggattttaatgaccagacaggtcattcatttgagggctatg
catgttataATAGCCTCCACTGACagactgatgcaagttacccaaccaAT
CTCACGGTAGGCTGCAAACACCAGAAAACACTGGTACCTTTTTTTTACAT
AGCTATctgagaattttattttattttctgattgAACTTTAACCTTCAAT
TCAACTGTCtgaaggaccctgccgacgcaccagacttaacgaacaccgga
cacgcgaaagtccggtgtaaaatgagaatttttttaccaccagaccatct
ctacaccggactaaAGGAAGTCGGTTGTCCGGTGTCGAAGAAGGAtactt
ttttccaccggacaatcaaaacataaatgTCCGGCGGCCAGAATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGACTGAcgccggactt
attgcgtccggtgtagcgaaaggatactttctgccaccggacaaatacac
cggacagtccggtgcgtcggcagggtcctctgtCTGACTGTAGTAGTGTA
GAATCAAACACAAcagatcaattttttttattagagtTTGAGTCAgtttt
gtaaaaatatataatctCAGTAAGAAAGTAAAGAATCAACTTACCTTGAA
TTAATTTCCAAACCAAAACTGATTAACTCTCATCTCTAAGTTTTCTCTCA
AGAAGTGCAAAATTTGTAAGTAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009112-exon-sc0000090-1491911889:593198..593536 | TCONS_00009112-exon-sc0000090-1491911889:593198..593536 | Clytia hemisphaerica | exon |
| TCONS_00009112-exon-sc0000090-1510915933:593198..593536 | TCONS_00009112-exon-sc0000090-1510915933:593198..593536 | Clytia hemisphaerica | exon |
| TCONS_00009112-exon-sc0000090-1575043694:593198..593536 | TCONS_00009112-exon-sc0000090-1575043694:593198..593536 | Clytia hemisphaerica | exon |
| TCONS_00009112-exon-sc0000090-1491911889:598188..598273 | TCONS_00009112-exon-sc0000090-1491911889:598188..598273 | Clytia hemisphaerica | exon |
| TCONS_00009112-exon-sc0000090-1510915933:598188..598273 | TCONS_00009112-exon-sc0000090-1510915933:598188..598273 | Clytia hemisphaerica | exon |
| TCONS_00009112-exon-sc0000090-1575043694:598188..598273 | TCONS_00009112-exon-sc0000090-1575043694:598188..598273 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:593198..598273 + |
Blast
The following BLAST results are available for this feature:
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