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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009137 ID=TCONS_00009137|Name=TCONS_00009137|organism=Clytia hemisphaerica|type=transcript|length=1900bpRun BLAST on NCBI transcript from alignment at sc0000090:265738..291374- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009137 ID=TCONS_00009137|Name=TCONS_00009137|organism=Clytia hemisphaerica|type=transcript|length=25637bp|location=Sequence derived from alignment at sc0000090:265738..291374- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009137 vs. Swiss-Prot (Human)
Match: RASA1 (Ras GTPase-activating protein 1 OS=Homo sapiens GN=RASA1 PE=1 SV=1) HSP 1 Score: 441.81 bits (1135), Expect = 1.927e-141 Identity = 250/584 (42.81%), Postives = 349/584 (59.76%), Query Frame = 2
Query: 182 APPPERWYHGRLGRKGAEEFLLKNNTPCAYLVRESDRKPGMYSLSYLSSTKNLSHFRITAICGDFYIGGRKFQSLQHLIGYYSTYGNLVKNEKLQSPVASLEPVHLAYRVVAKFPFTGSTDTDELSFVAGDVFAVQNEIDDDWMWVVSQNDNKSGLVPKALTEALGPDADPFEGQSWFVA-VDKHDAETILMNYGEVGNFIIRPSQNQ-GDYSLCLRERTQTLRFLIKRT-GQQFSLGGRSFNSIEDIISRYKKEQLAEGVSLSRPLERVRYEPFLRNAQGSMRTREQHNGGLPRIPPPRLNSRLSDTGF--VTKSGFLIKKGNRNKWKRLYMVLKGDEQQLLYFENEKRA-KPKGLFDLSYASVYTVHDSLFGRPNCFQIVVRALNETQTHF-LCTETSDQAQEWLEAIGPFCGSMNKQNQRKISQQNAIKELRSLEITICH---AQKIPVNKLPHPYCVVSLNDIKTCRTQAKEAPEPVFDEEFKFEDLPNDITSFTVSMYTRKTGPYTKDKEMARVTVNLNTMEPGKALDNWHSLTSAQHKSDM--GSVRITAKFKHEIIMPVEEYSKLTEVLLSRDYAFV 1897
APP +WYHG+L R AEE L + +YL+RESDR+PG + LS+LS ++HFRI A+CGD+YIGGR+F SL LIGYYS L+K EKL PVA EPV RV A P+T DTDE+SF+ GD+F V NE++D WMWV + ++ GL+ + L E +G + DP EG+ WF + K +A +LM G+V +F++RPS N GDYSL R RF I T QF +GGR +NSI DII Y+KEQ+ EG L P+ E L + ++ +E +N + + D + + K G+L+KKG +WK LY +L+G + QL+YFE+EKRA KPKGL DLS SVY VHDSLFGRPNCFQIVV+ +E F ET +QA++W++ + FC N RK S + K LR + + H A K+PV +PYC + LN ++ +T A+E PV+ EEF F+DLP DI F +++ + +KD ++ + L+ ++ G A D W L+S + GS+R+ A++ E IMP EEYS+ E++L ++ V
Sbjct: 175 APPTNQWYHGKLDRTIAEERLRQAGKSGSYLIRESDRRPGSFVLSFLSQMNVVNHFRIIAMCGDYYIGGRRFSSLSDLIGYYSHVSCLLKGEKLLYPVAPPEPVEDRRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVGREEDPHEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDIIDHYRKEQIVEGYYLKEPVPMQDQEQVLND---TVDGKEIYNT---------IRRKTKDAFYKNIVKKGYLLKKGKGKRWKNLYFILEGSDAQLIYFESEKRATKPKGLIDLSVCSVYVVHDSLFGRPNCFQIVVQHFSEEHYIFYFAGETPEQAEDWMKGLQAFC------NLRKSSPGTSNKRLRQVSSLVLHIEEAHKLPVKHFTNPYCNIYLNSVQVAKTHAREGQNPVWSEEFVFDDLPPDINRFEITLSNKTKK--SKDPDILFMRCQLSRLQKGHATDEWFLLSSHIPLKGIEPGSLRVRARYSMEKIMPEEEYSEFKELILQKELHVV 738 The following BLAST results are available for this feature:
BLAST of TCONS_00009137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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