TCONS_00008905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008905
Unique NameTCONS_00008905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008905 ID=TCONS_00008905|Name=TCONS_00008905|organism=Clytia hemisphaerica|type=transcript|length=1835bp
AATAGTTCTGTCAGATGTGTAAAAGTGAAACTGAGAAACAGCAACTTAGC
GCAAAAGAGAGGGAAGGAGAAAATAACAGGTGTGCTgtgaacaaaaattg
gagtagaAGAGCGACATGTTTGTACTCTAGAGCAGATAAATAGGAGAGAA
TTGAAAGCCGTACAAAAAAAGCCTAGAGGAGATCATAATTTTAAATTACT
GTATTGTTTGGTATTTTTTGTTGTCTATAGAAACAAAAGATAATAAATAC
AACATGATGCAGTCAATGGGTCAGCAACGATTTGGTAATGTGAACAACGT
AGCCCAACCTGCACCGCCAACATCCGCAGCTGGTGGTGCTGCGCCGCCAC
ACATGGCGAATAACCAACTCTCATCTACTGATAGAGAAAGAGTTTATCAA
TGGATATTAGAACTTGCTAGTCCTGATACACGAGAACATGCACTTTTAGA
ACTAAGCAAGAAGCGAGAAGTTGTCGCAGATTTAGCACCGATGCTATGGC
ATTCATTTgGCACAATTGCAGCTTTACTTCAAGAGATTGTCAACATTTAT
CCAATGATCAACCCACCAAATTTGACGGCTCACCAATCAAATCGTGTATG
TAACGCACTTGCTTTGTTACAATGTATTGCATCCCATCAAGAAACAAGAT
CACCCTTTCTTCAAGcACAAATTCCATTGTTCTTATACCAATTTCTTCAC
ACTACAAGTAAGACTAGACCATTTGAGTATCTCCGATTGACAAGTCTTGG
TGTCGTTGGTGCTCTAGTCAAGACAGACGATCAAGAAGTCATCACCTTTC
TTCTGTCAACGGAAATTATTCCCTTGTGTCTTCGGATCATGGAATCTGGA
AGTGAGCTTTCTAAAACGgTAGCAACTTTCATCTTGCAAAAGATTTTACT
TGACGAAACTGGTTTATCATACATTTGTCAAACTTACGAACGATTTTCTC
ATGTAGCCTTGATACTGGGGAAAATGGTACTGGCACTTTCATCCGAACCT
TCGCCTCGATTACTCAAACATGTCGTTCGATGTTATTTGAGACTCTCGGA
TAACCCAAGAGCACGTGAAGCACTTCGCCAATGTTTACCGGAATATCTAA
AAGACAGTACGTTTAATAATTGTCTAAAAGATGACACTTCAACTAAAAGA
TGGTTAGCGCAATTGAAAAAGAATCTACAAGAAATTCCACCACCTCAAAG
TTTAGCAGACGCTCACCGAATGGGCATGGGTAACTAACTGTGAGAAGAAT
TTTTTCGTTTTGAGTTTCATAATTTCCAGACAATTTTCCAGCTACGATAG
GGTGGAACTCTAAAATATTGTACAAGATCGTAATACATGATCGTGATATT
TTTTCCTGTTCAAAATTCTTTTGGTTCGGACAATATTGCAAATTGAACAT
TTTATCAACGATGAAGGATTGCCAGATATCGTATTGGTCTTATGCGGAGA
TATGCGACCAAGTTAGTATGAAAATGATTGGATCGTGAATTAGCAAGGct
aaaaaacaataaatttaagtagttttgtttttgataaccaatcatatttt
gtaaaaaatgtttaacgACCAATGTAAAAGAGAAGTAACAGCGCGGGACA
AAAAAAgttacttcaaaatatgttatcaTATTGCAACAAATCGTTTTTAG
AAATGGTAAATttcgtttcaaaattttttatttttctgagaCTCGCACGC
ACACAGCCGCCTCCGGTGACTTCTACATTGCCTTTCTAGAAGAATCTCCT
ATCCTATTCAAGGAAAATTAAggacactttttaattttcaaagatccCTT
CCTTCTTAGCTAGGTTATAAAAAGGTAAATTCCCA
Run BLAST on NCBI

transcript from alignment at sc0000088:577529..584317-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008905 ID=TCONS_00008905|Name=TCONS_00008905|organism=Clytia hemisphaerica|type=transcript|length=6789bp|location=Sequence derived from alignment at sc0000088:577529..584317- (Clytia hemisphaerica)
AATAGTTCTGTCAGATGTGTAAAAGTGAAACTGAGAAACAGCAACTTAGC
GCAAAAGAGAGGGAAGGAGAAAATAACAGGTGTGCTGTGAACAAAAATTG
GAGTAGAAGAGCGACATGTTTGTACTCTAGAGCAGATAAATAGGAGAGAA
TTGAAAGCCGTACAAAAAAAGCCTAGAGGAGATCATAATTTTAAATTACT
GTATTGTTTGGTATTTTTTGTTGTCTATAGAAACAAAAGATAATAAATAC
AACATGATGCAGTCAATGGGTCAGCAAGTAAGGCTTTTAATGAAGCAATT
TTTTTAATTATTCACTTTATAATCATAATTTAGAGTGATATAATTGTAAC
ACAGGCGATTCTACATTCTTTCTACGACACTTCTAAATAGAGCTTGATAG
GAATATTATTGACTGAAAAGTTGAACTTGAAAAAGACACATAATACTAAG
GAGGTCGAAACGTCGTTAAAAGAAAAATGTGTTATGTTTTATTTTGATTT
GGTTACACATTGCAAGGCTTTTTATGTTTCACTTATTGACTGAAAACATA
TATATGGTGAAGATCTGATCTCAAGAAAAAGAAGTGTGAAAATACTAAAT
AAAATAAAAATGAAACATACAAATAGAGATAATACTTTTATAATTATGCA
GCTTTTTCTTATTTTCTATTGTATATCCATATTTGTTTAGCCATAGTGTT
AAAATAAAAGTTCCCAAGAAGAAACATATTCAAAAATTAATTATCAATAT
TTTATAGCGATTTGGTAATGTGAACAACGTAGCCCAACCTGCACCGCCAA
CATCCGCAGCTGGTGGTGCTGCGCCGCCACACATGGCGAATAACCAACTC
TCATCTACTGATAGAGAAAGAGTTTATCAATGGATATTAGAACTTGCTAG
TCCTGATACACGAGAACATGCACTTTTAGAACTAAGGTATTTGAGTATGG
TTTTCATTCAAAACGAATCTAATTATGTTTATGTTTTTGAAACAGGCAAT
TCTTAAGACTTCTCAGTGTCCAGGTATTAGAGCTGCCCTTCTTTAAATTT
TGATTCTGTCAAAAATTCCTGTTTTTGCAAAAAGAAAGTTGCTGAAAAGC
TCCCTCTTTGATATCCTACAGAAGCTGTTCTTTTCAATATGATCGAAACC
CTTTTTATTAAAATATCCATTATGAAATGAAAAATTCACCATTCTTATAA
AAAAAACTTAAGTTTGCTCTATAATTTAGAATCAATAGCTAATTGGAATT
TCCATTGCTTTCATTTTTAATCCAAACGTCAGCAAGAAGCGAGAAGTTGT
CGCAGATTTAGCACCGATGCTATGGCATTCATTTGGTAAAATTTTGCATT
TTTTAATTGTTCATTGAAAAAAGGTTTTTCTAATGAACTATAGAATTTCA
AATTTTTGGGTTGTTTCTTTTACGACTTGCAAAATTGAGCATGAAGGCAT
AAAAAAATGGTTTCTATAATTTTGATACGCACACCTTTTTTAATAAAACA
ACTAAAATTTTGTAAACAATTTAGATTTTCTTTTTGAGTTTTAAGCCTAA
AAACGTTCCACATGTTCTTTCATCTAACCATTTTGTGAGTGAGTATTTTT
GTCCATTTTCCTAAGTTACAAAGGTACAAAGCCTTAGTAAAATGAACTTT
ATTTGTTTTTGATGTTTTATTTCTCGATCTTACATTCAATCTTTTTCAAT
ACCTTTTCTTATTATCAGGCACAATTGCAGCTTTACTTCAAGAGATTGTC
AACATTTATCCAATGATCAACCCACCAAATTTGACGGTAAAGAAATATTA
GTTTCTTGAGTTACATCCTTTATTGGGCTCTTCCATAAAAAAATTGAATA
ATGGGAGTGGAGGATATAACAAGTGTCAGTTGATCCCGGACATTCAAAGT
CTCCCCTATTCAGAGCAAGTTTGCCCCTTAAACAAGGCAAATTTTGCAGA
TTTTTCACTCACTACCCCCGGACAAAATATATCTATCCTCCAACCCCATG
TACAAAAATTTTCTGGAAGAGCCCTTTACACGAAAATAAGTAAACATTTA
ATTAACCCGAATTTGGAAATTTCGTGTTGATTAAAACCCCTTTAATTGAA
AACCAGTCGTGGTGTCCTTGAAAAAAGCATGTGTGTTAATTTCAAGACTG
TTCATTATGTGTCTATTTGACACAAGTGTGATAAGGTATTATTTTTTATG
TATTATATCTTTATTATAACTACTTACTGGCATCCTGTAACAAATTCGTG
CGAGAGGTAGGTAGGTAGAAGTCTACTATTCAAAACTGTTTTTAACTTCG
CTTCATCTAATAAGCTTGACTGAATATCTATCGTTATCCAATTTTTCTTA
TGGTTTAAAGTGAGATATCTGTTGTTCAATATTCTTCACTTCCTTAAAGG
TTTTATTTTTACATAAGTGATTCCGTTTCATATCAGACACATATTTTATA
TCAGGACAGTCTTGCTATTGTTATATTATTCTGACCAATCTTGCTCCACA
TCCGTGTCAATCTAATGTGAAAAAGCTTGTGAATTAGAATTGATGAGTAA
GCAAACGATATCACTCTTATTCAAAAACAAAACCTGTAACATAATAATAG
TAAAAATGATTTTTCACATTTATTCAACATCTGATTTTATTTTAGGCTCA
CCAATCAAATCGTGTATGTAACGCACTTGCTTTGTTACAATGTATTGCAT
CCCATCAAGAAACAAGATCACCCTTTCTTCAAGGTTTATATTTATGCAAA
GCCTTTCTTCTCTATTGTGTCTTTGTTTTCTGACATATTAAAAGTGAAGA
AATTTCAGCGAATATGGCGAATCGCGAAAAATTCGCTAAATTCGCCAAAA
ATTTTCCCCGCCAAATTTAGATTTATAGGCCATTCGCCAAATTTAAATTT
CTTTCAAACTAGTCTCTATTTCTCCTAAAAACCCCTTTTTTCATCCTTTT
TTAAAGCTTAAATATTCACCAAAAATGGGTCGTTCGCCAAAATTAATTTT
CACCAATATTTAGAAATTTTATTAAATCGCCAAAATAAATTCCGCCAGAT
TGCACCAAACTTTCCGGCCAAAATTTCTTCTCTTAAGGTAGTTCAGTATT
CTCTAGTGTGTTCGTAATAAATGTGTAGTTTGCCCTGAACTATCTATGTA
GTTTGGATGATTAAAAAGTACACCGAAAAAATAATGCAAGTATCTTAAAA
CTGGGTGTTCACTGGAAAAATATAAGCTCGGCTTTTACCCGCTCTAAAAA
ATTAATCCAGACAGAAATTATTGAAATAAAAATCTATCGAACGTAATCGT
AAACGGGTGAATTGCACCAAATCTGTACCATGGTTTTGAAAACAAGACAA
ACTGTCTTCAAGTTGCCATAGAAGTGGATGTGTTAGGTATTAGAGCTTAA
GTTTTTGTGGTACAGATTTGGCGCAATTCACCCATTTATCGCTCATTCAT
GGTATGGTGCTTGTTAATTTTTGCACACAAATCGATTGTATATCAATATA
AGTTTTTGGTATTGATTTTTGAGCATAGTGTATGTCTTACACTCTCGATG
CTCTTCTTTATTTCACTAATTCAAAGTTGGTTCCAATTGCTATACGGTTC
ATAATATTCTTATTTTTAAGCACAAATTCCATTGTTCTTATACCAATTTC
TTCACACTACAAGTAAGACTAGACCATTTGAGTATCTCCGATTGACAAGT
CTTGGTGTCGTTGGTGCTCTAGTCAAGGTAAAATACATATGAACATTATT
TTGGACATCTACTTAATCATCTTATAAGAAACCCGTTAAAAAAATGAATA
GAAATGTCTTCAAGTGATGTCTTATCCTATGAGACCATTTAGAGCCTCGT
TTTCAAAGAGTTGTTGACACTTGAATGTTCATTTGTATGTCCTGGCGTTA
TCAAAATTGATGACTTGATGAAATTGATGGCTTTGACATCTCAAGAAAAA
TATATTGTACAGTGGAGTCTCTTTAACTCGAGCCTCTATAACTCGAACAA
CGTTTCAGATCCCTTCAGTTAAGAATGTGTTACAAACCTCCGTAACTCGA
AATTTTCTTAACTTGAACAAATCTACGTTTTTTATGTTGTAGACAGACGA
TCAAGAAGTCATCACCTTTCTTCTGTCAACGGAAATTATTCCCTTGTGTC
TTCGGATCATGGAATCTGGAAGTGAGCTTTCTAAAACGGTAACTTGTCAT
TCGCTTGAATTTTTTTAATTTTATCTAAATACCTCAGCAAAATTATTTTG
TTTTAAAAGAATAAATACCGTACCTTTTTTGATCAGTTTTAATCAAAGAT
ATGAAGATATGAAGATTCTAGGAACTGGTGTACTTTTTTTAATGTTAATA
TCTACTTACGTTTGTCGTATACTTGAGGTATTGAAAATGTGTTCAAGTTA
TCGAAGCCTTTCTTTTACAATTTTACAGGTAGCAACTTTCATCTTGCAAA
AGATTTTACTTGACGAAACTGGTTTATCATACATTTGTCAAACTTACGAA
CGATTTTCTCATGTAGCCTTGATACTGGTAAGTGACCTTTGATCTCACAA
AAAGCTTGATATCTTCTTAAAGACTCGAAGGCAATTTTCTCTTGTGAGGA
TGACATGGCGCTTAACTAAGTTCATGTAGGTACTCAATCTATGTCGTTTA
TTTGTAGGTTGCGAATAGGTGGTCGAGTTCTTCAATTTTTTTTTGTCAGG
CTCTGGGGGACTTTACCTAAAAATGTTTGATGATGTACAGTTTTTGGTAT
TGGGAACTAGAAACGTCATCGTTTTTCTCTTACTCTGACCCTCCCCAGCC
CTTCCTTGGTTTCTATCCAAGCTCTCTTCGGATCTATTTTGCACACAAAC
TATTATCCTATATATAACTACACTACTTGGATGAAGATTCATTTTTCAAA
TTTTTATTTATTTTTTACATTTCTTATAAACAATTCATAACATCTAAATC
CTCGGTCGGTCTTATTTTTTTGAAACTTGTTATTTTCTACTGCGGAACAG
TACATTATGGAGAGCCAATTAACGATCAAAATGCAATTTTCTTACTTCTA
GGGGAAAATGGTACTGGCACTTTCATCCGAACCTTCGCCTCGATTACTCA
AACATGTCGTTCGATGTTATTTGAGACTCTCGGATAACCCAAGGTAGATT
TTTGAGCCCTACACAAATTTACTGCAGTAATTTTGCCAGTTAATTTAAAA
ACTAAAATATTGTCACTTTTGCCATATAATAAGTGTTTTATAAAGAAAAG
CATATCAAATTTTTTTGAAATTTACAAAGAAATATTACGTATCAGCTAGA
CATTTTTACAGGATTCATGCATCTGTTACATGCTATTTTCTACTCAATTT
TAAGATCATAAATATACAACATCTGTGCAGACATTTGTCATCATTTTGTT
CAAGAAGGTTTAACAAAAAGAGTGTGTTCAACAATAAAAAAGTTACGCAG
TGACGTAGAAAAATATCATGTACTAAAAAACAAGAATCCTATGAAATGGG
CTAATTACCTTATCGGAACATAATCTTTTTAATTATTCTTAATTTGGGAA
AGACCAGTCCCTAACCAGTAGCATACCACTCCGAATAATTTGTAACTAAC
CCCCCTTTGAAAGCAAAGATGTATTTCTTCCATTTCTTCCAATATATATT
CACAAATGTTCAATTTTTAAAATTTCTTCATCTTTTATCTCTCAGAGCAC
GTGAAGCACTTCGCCAATGTTTACCGGAATATCTAAAAGACAGTACGTTT
AATAATTGTCTAAAAGATGACACTTCAACTAAAAGATGGTTAGCGCAATT
GAAAAAGAATCTACAAGAAATTCCACCACCTCAAAGTTTAGCAGACGCTC
ACCGAATGGGCATGGGTAACTAACTGTGAGAAGAATTTTTTCGTTTTGAG
TTTCATAATTTCCAGACAATTTTCCAGCTACGATAGGGTGGAACTCTAAA
ATATTGTACAAGATCGTAATACATAACAGTTAACGCTTTTTAATTCGATT
TTCTCGGGGAAAAGGATTTTCATAGAATAAGAGGTGTGTCGAATACTTAC
TTTAAGTGGATTAATTTTCGCGTGGACTTTGGTACGCCAATTCGGAATCT
TAAAATTTTAACGTGGACAAATTTTCCCGAATTGGCCTCCATTTTATCCA
TTTTGACCAAAAAGTAGATTTTAAATTCTTTGCGAGGACTAATTTTCGCG
GAAACGGCTAAAATTTGCGAAATTTAATCTACGCGAAATTTAATCTACGC
GAAATTTAATCCATCGAATTAGAGAGCGTCAACTATATACATGATCGTGA
TATTTTTTCCTGTTCAAAATTCTTTTGGTTCGGACAATATTGCAAATTGA
ACATTTTATCAACGATGAAGGATTGCCAGATATCGTATTGGTCTTATGCG
GAGATATGCGACCAAGTTAGTATGAAAATGATTGGATCGTGAATTAGCAA
GGCTAAAAAACAATAAATTTAAGTAGTTTTGTTTTTGATAACCAATCATA
TTTTGTAAAAAATGTTTAACGACCAATGTAAAAGAGAAGTAACAGCGCGG
GACAAAAAAAGTTACTTCAAAATATGTTATCATATTGCAACAAATCGTTT
TTAGAAATGGTAAATTTCGTTTCAAAATTTTTTATTTTTCTGAGACTCGC
ACGCACACAGCCGCCTCCGGTGACTTCTACATTGCCTTTCTAGAAGAATC
TCCTATCCTATTCAAGGAAAATTAAGGACACTTTTTAATTTTCAAAGATC
CCTTCCTTCTTAGCTAGGTTATAAAAAGGTAAATTCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004984XLOC_004984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008905-exon-sc0000088-1575043694:584041..584317TCONS_00008905-exon-sc0000088-1575043694:584041..584317Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1575043694:583382..583560TCONS_00008905-exon-sc0000088-1575043694:583382..583560Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1575043694:582983..583035TCONS_00008905-exon-sc0000088-1575043694:582983..583035Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1575043694:582532..582599TCONS_00008905-exon-sc0000088-1575043694:582532..582599Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1575043694:581585..581672TCONS_00008905-exon-sc0000088-1575043694:581585..581672Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1575043694:580591..580697TCONS_00008905-exon-sc0000088-1575043694:580591..580697Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1575043694:580130..580225TCONS_00008905-exon-sc0000088-1575043694:580130..580225Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1575043694:579791..579889TCONS_00008905-exon-sc0000088-1575043694:579791..579889Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1575043694:579175..579266TCONS_00008905-exon-sc0000088-1575043694:579175..579266Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1575043694:578346..578622TCONS_00008905-exon-sc0000088-1575043694:578346..578622Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1575043694:577529..578027TCONS_00008905-exon-sc0000088-1575043694:577529..578027Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1510915933:584041..584317TCONS_00008905-exon-sc0000088-1510915933:584041..584317Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1510915933:583382..583560TCONS_00008905-exon-sc0000088-1510915933:583382..583560Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1510915933:582983..583035TCONS_00008905-exon-sc0000088-1510915933:582983..583035Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1510915933:582532..582599TCONS_00008905-exon-sc0000088-1510915933:582532..582599Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1510915933:581585..581672TCONS_00008905-exon-sc0000088-1510915933:581585..581672Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1510915933:580591..580697TCONS_00008905-exon-sc0000088-1510915933:580591..580697Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1510915933:580130..580225TCONS_00008905-exon-sc0000088-1510915933:580130..580225Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1510915933:579791..579889TCONS_00008905-exon-sc0000088-1510915933:579791..579889Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1510915933:579175..579266TCONS_00008905-exon-sc0000088-1510915933:579175..579266Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1510915933:578346..578622TCONS_00008905-exon-sc0000088-1510915933:578346..578622Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1510915933:577529..578027TCONS_00008905-exon-sc0000088-1510915933:577529..578027Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1491911889:584041..584317TCONS_00008905-exon-sc0000088-1491911889:584041..584317Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1491911889:583382..583560TCONS_00008905-exon-sc0000088-1491911889:583382..583560Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1491911889:582983..583035TCONS_00008905-exon-sc0000088-1491911889:582983..583035Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1491911889:582532..582599TCONS_00008905-exon-sc0000088-1491911889:582532..582599Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1491911889:581585..581672TCONS_00008905-exon-sc0000088-1491911889:581585..581672Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1491911889:580591..580697TCONS_00008905-exon-sc0000088-1491911889:580591..580697Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1491911889:580130..580225TCONS_00008905-exon-sc0000088-1491911889:580130..580225Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1491911889:579791..579889TCONS_00008905-exon-sc0000088-1491911889:579791..579889Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1491911889:579175..579266TCONS_00008905-exon-sc0000088-1491911889:579175..579266Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1491911889:578346..578622TCONS_00008905-exon-sc0000088-1491911889:578346..578622Clytia hemisphaericaexon
TCONS_00008905-exon-sc0000088-1491911889:577529..578027TCONS_00008905-exon-sc0000088-1491911889:577529..578027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:577529..584317 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.1721	14.879	20.2699	27.5294	1.38867	1.77849	1.5756	3.80935	4.10948	3.08153	1.41988	3.49879	3.63507	4.45147	7.92411	3.75209	6.90157	6.21451	3.4312	5.12215	6.90571	9.1299	7.72967	9.8709	7.8265	5.41854	1.95758	2.95802	3.2947	5.02266
Blast
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BLAST of TCONS_00008905 vs. Swiss-Prot (Human)
Match: CNOT9 (CCR4-NOT transcription complex subunit 9 OS=Homo sapiens GN=CNOT9 PE=1 SV=1)

HSP 1 Score: 485.723 bits (1249), Expect = 2.389e-168
Identity = 239/286 (83.57%), Postives = 255/286 (89.16%), Query Frame = 2 
Query:  368 LSSTDRERVYQWILELASPDTREHALLELSKKREVVADLAPMLWHSFGTIAALLQEIVNIYPMINPPNLTAHQSNRVCNALALLQCIASHQETRSPFLQAQIPLFLYQFLHTTSKTRPFEYLRLTSLGVVGALVKTDDQEVITFLLSTEIIPLCLRIMESGSELSKTVATFILQKILLDETGLSYICQTYERFSHVALILGKMVLALSSEPSPRLLKHVVRCYLRLSDNPRAREALRQCLPEYLKDSTFNNCLKDDTSTKRWLAQLKKNLQE--------IP-PPQ 1198
            L+  DRE++YQWI EL+SP+TRE+ALLELSKKRE V DLAPMLWHSFGTIAALLQEIVNIYP INPP LTAHQSNRVCNALALLQC+ASH ETRS FL A IPLFLY FLHT SKTRPFEYLRLTSLGV+GALVKTD+QEVI FLL+TEIIPLCLRIMESGSELSKTVATFILQKILLD+TGL+YICQTYERFSHVA+ILGKMVL LS EPS RLLKHVVRCYLRLSDNPRAREALRQCLP+ LKD+TF   LKDDT+TKRWLAQL KNLQE        IP PPQ
Sbjct:   14 LAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ 299
The following BLAST results are available for this feature:
BLAST of TCONS_00008905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNOT92.389e-16883.57CCR4-NOT transcription complex subunit 9 OS=Homo s... [more]
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