TCONS_00008899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008899
Unique NameTCONS_00008899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2109

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008899 ID=TCONS_00008899|Name=TCONS_00008899|organism=Clytia hemisphaerica|type=transcript|length=2109bp
TGTCAACGGATCAAAAAGTGTAGCACAATGGGAACCACTCGACATATCGT
CATGCAGAAGGAACGATCAGGAAAAGCAACTCCTAAATGTTAATTTGAGT
AAAATTGACAGTGAGACTGTTGGCGAATTTGCAAAACAGATTAGCAAGTT
GACGTCCAATACATCACTTATCAACAACAAGCAAACTGTTCAAAATTTAA
tcaaagttcttgaaaaaattattaacattcaaaacacaaaaattgagGTC
AAAGAAAACGTTTTGAAGATTCTGGACAACATCATACCAATCAACGATTC
AATTATTCcaaacgaaaacaaaaatcaacttcttagtTTTGTTGACAAAA
TCACAGAAAACATTCAACAACCTTCGTTCAATTATTCCGGACAAAATCTC
GCTGTTTCGATCCAAACGCAGAACAGGTCGCAAGCAACAAATATAAAAAG
TTTTGACAATGatgagaaaattgaaattgagtTCAATAATTATGACAACC
TTACCGTTGTTGGCAATATTAGTCAAGTGTCTTCCATATATATCCCAGAA
ACGACTTTCACTGATATACTAAGCGACATCAAAATCATATCTACTGCATA
taaaaaagacacttttttcaGTACAACGCCATCAAACAAAACACAAACTG
GCAGTTACATTATGTCAGCATCAATCAAGAGTCAGCATATTGAGAATTTG
ACAGAtccaataaaattgaaatttaaaatcgaTGAAAGAAAGTCAAACGG
GACATGTGTTTTCTGGGAAACagACGGAAACTATTGGTCAACTCGTGGTT
GCACAACCTTAGTGAATTCGAAAAATGAGGTCACATGTGAATGCAATCAT
TTGACAAATTTCGCCATTCTTTTCAATGTGTATCATGTAGATGAAGATGT
GTTGAAATCGCAAGAAGTTTTGAATTATGTTAGTCTTGTTGGTTGTGTTC
TATCCATCGTTGGATTATTGGCCACTGTTATTGCTCTTGGTTGTTCGACT
GGGCAAAGAAAAACCCGTCGTAAAACCGGTCAATTTATGATCATAAATTT
CTGCATAGCTTTGGTTCTTCTTCTTTGTGTGTTTATACTCATCACCAATA
TGGAACACTTTCATCATTCTTCAACTATTTTATGCCACAACTTGTCTGCC
ATCTTACATTTCACGATTATGGCAACTTTCTGTTGGACGGCCGCCCAAGC
GAtctttttgtataagaaaacTGTTCTGGCGACCAAGAATTTTCAAGGAG
ATAACATGAAAAGCTACTATGCAAGTCTCTGTCTTGCTTGGGGCTTACCG
ATGGTCGCTGCTGCAGTAACGTCAAGATTTACCAAAAGCCAATTTGACAG
ACCTGACAATGAACTaTGCATCTTGAAAGGtgatattttcatttattcGA
CGATCATTCCAATCACatgtatcatttttttcaacCTCATTGTTTTCATA
ATGGTCATGCGCAAAGTTCATGGTCATTTCAAAACACGTGCTTCATTTCA
ACAAAAAGAAGACAAGCAGATCTGGAAAAGAGCGAAGGCTACAATGATCT
GTATGGTTCTATTAGGATTGACCTGGATTTTCGGATTCATGGCTGTTGGT
GATTTACATGCTCCTTTACAATGGCTGTTTTGTATCACGAACACTTTACA
aggtgtttttgtttttgttttctacGTTCTCCTCAATGATGAAGTGCGAA
AAGCTTGGAATTCAAGATAGTCTTCTGCGTTAACGCTTACTTCACACAAA
ACCAAGAAAAAAACATCggaaaatgaattcaaaatcgGAACATTGAGAAA
TCATGCAAGAACTAAACAAATGAAAGATAAATGTGAAACTTTTTAGGACT
Ttgatatacagggtgtccctaattaaagtatcgagtttgaacatgcgatt
gagtagaaaagtttgtgtgtgttatcgctaaaatataaggaCGCTCTCCG
TCACACAGgctattacaaaaggtagtgacaacgtataaattaatcgtaat
gacaaagaaaaaagagggagagcttaaaatacaattttgtgaacacgcac
ataaaactttctactcatagttgtgtttcgactcgatactttaattaggg
acaccctgt
Run BLAST on NCBI

transcript from alignment at sc0000088:369740..374265-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008899 ID=TCONS_00008899|Name=TCONS_00008899|organism=Clytia hemisphaerica|type=transcript|length=4526bp|location=Sequence derived from alignment at sc0000088:369740..374265- (Clytia hemisphaerica)
TGTCAACGGATCAAAAAGTGTAGCACAATGGGAACCACTCGACATATCGT
CATGCAGAAGGAACGATCAGGAAAAGCAACTCCTAAATGTTAATTTGGTA
AGTTAGTTGTCCTCACATATTTTTTATAAGAACATCCAAAAAGCCTTCAG
ATGTGCTTAACTTTTTGAGATTCAAGCCTAAAGTCCTTTAAAATGTTCAT
ATTCATATTTGTGAGTATTTTTGTTCAAATTCCTAAGAATAGACCTTTTC
AGAATTCACGGTTTACCTTTTAGAGTAAAATTGACAGTGAGACTGTTGGC
GAATTTGCAAAACAGATTAGCAAGTTGACGTCCAATACATCACTTATCAA
CAACAAGCAAACTGTTCAAAATTTAATCAAAGTTCTTGAAAAAATTATTA
ACATTCAAAACACAAAAATTGAGGTAAGGCTTTATAACAGCTCCTGCACC
AAGGTAAACATCAATTCTTGAGTTTAACCGAAAGTCTGACTTTCAGAGGC
TCCTGAAATCTAGATATTGTACACCAATCGATGCAGAATTACATATAGAT
TCCAAAGAATCTTAATGAAAAGACAAACAAAGATTTCGATATAAAATGTA
CACGTTTTTTTATATCCAAAATTTTTGAAGCCTTCTGATGTTCATGTCTT
TTGAATTTTAAGCCTAAAAATGTTCTTAACATGTTCTCATTTCCCAATTT
TTTGAGTACTTTTGTCTATTTTCCTAAGAAATCGGGTACTTCAAAGTACC
CAAAGCCTAAAAATGTTCTTAACATGTTCTCATTTTCACAATTTTTTGAG
TACTTTTGTCTATTTTCCTAAGAAATCGGGTATTTTAGAGTATCCAAAGC
CTTAAAATGTTCTTAACTTGCTCTTAACATTTTGGCCATTGAAACCTCAT
GTTCCTATGTAGTTTGTTCATAAAAAAAACGTGAAGTGCAATTTTAATTT
AGTATCTAAGGTTGTTACCATTCACTTAATATTACAGGTCAAAGAAAACG
TTTTGAAGATTCTGGACAACATCATACCAATCAACGATTCAATTATTCCA
AACGAAAACAAAAATCAACTTCTTAGTTTTGTTGACAAAATCACAGAAAA
CATTCAACAACCTTCGTTCAATTATTCCGGACAAAATCTCGCTGTTTCGA
TCCAAACGCAGAACAGGTCGCAAGCAACAAATATAAAAAGTTTTGACAAT
GATGAGAAAATTGAAATTGAGTTCAATAATTATGACAACCTTACCGTTGT
TGGCAATATTAGTCAAGTGTCTTCCATATATATCCCAGAAACGACTTTCA
CTGATATACTAAGCGACATCAAAATCATATCTACTGCATATAAAAAAGAC
ACTTTTTTCAGTACAACGCCATCAAACAAAACACAAACTGGCAGTTACAT
TATGTCAGCATCAATCAAGAGTCAGCATATTGAGAATTTGACAGATCCAA
TAAAATTGAAATTTAAAATCGATGAAAGAAAGTCAAACGGGACATGTGTT
TTCTGGGAAACAGGTTTAAATTCTTTTTTCTTTCATTTCTTTGGCGGTTA
TTTCTTACCTGGAGCAATCCCAGCTGGCACACAACGTTGTTTCGACGTTC
ACAACGTCCATATAACGTTAGAAAAACGTTGAAACAACGTTGTGTGACAG
CTGGGATCCGGTTAATATTTCATCATGTGATATATAAACATCAAAATGAA
ATGATGAATGAATCTTTTTCTCTTTACTTCAATAGACGGAAACTATTGGT
CAACTCGTGGTTGCACAACCTTAGTGAATTCGAAAAATGAGGTCACATGT
GAATGCAATCATTTGACAAATTTCGCCATTCTTTTCAATGTGTATCATGT
AGATGAAGATGTGTTGAAATCGCAAGAAGTTTTGAATTATGTTAGTCTTG
TTGGTTGTGTTCTATCCATCGTTGGATTATTGGCCACTGTTATTGCTCTT
GGTTGTTCGACTGGGTAAGAATCTGACTGGAACAAAATAAATTAATTCTC
ACATAGAATGCCTTCTTGTAACAAAAGAAAACATTTTTAACTTAAATTCT
GGTTCGGTCAAAATTGATAGTACTAGTTTTCCCGACCCGATAAGGTTGAT
AGTGAATTTATGCATTTGCACTGTTGAGAACGGTAGGGTGACTGAAGCAA
TTTGTCGTCCTCAGCTGGTCAGGATCTAGACAATTCAGCAACTAATCGTC
TCCGTCGTAGAAAAACACAGATACATAAACCAACTAATGGATGATCTTTG
GGATAACGTGTAAAAGCATGTGTGATGTAATCCCTAAAGATACGGCATAG
ACCGCTGTTAAAACTTGTGACTTAGGATAATTGCAAGGCAATTTATCTTC
GCTGCATTTAGGGGTCCCCCAGTGGTTTGCGTGAATGCGTGAATGGGCTT
TTTCACTTGCGTGAATGCCTAAAAATAAAATAAAAATTGCGTGAATACGT
GAATTGGAAAGCTTTGCGTGAACAAAAATTGCGTGAATTGCGAAAAAAAC
ATTGTGTGAATTTGGGAAAAGAAATTTACGTAATTGCATGAATTGATGGT
CCGTTGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGTTCATTTAT
TTTCAATATAGCGTTTGCAATCAAAACCACGCGGGTCACGCGTTTTAGTA
TGGAAAATAAATGGTTTCATCTCCCATCCAAGAGTTTTATCTAATCTAGA
ACAACCTTTAGGGTTTTCAAATCAATGGTTCAAATACCAATCTTTAATCG
TTATAGAATAGAAAGGGCTGACGTCTCTTTATTATTTTCTTATAGGCAAA
GAAAAACCCGTCGTAAAACCGGTCAATTTATGATCATAAATTTCTGCATA
GCTTTGGTTCTTCTTCTTTGTGTGTTTATACTCATCACCAATATGGAACA
CTTTCATCATTCTTCAACTATTTTATGCCACAACTTGTCTGCCATCTTAC
ATTTCACGATTATGGCAACTTTCTGTTGGACGGCCGCCCAAGCGATCTTT
TTGTATAAGAAAACTGTTCTGGCGACCAAGAATTTTCAAGGAGATAACAT
GAAAAGCTACTATGCAAGTCTCTGTCTTGCTTGGGGTGAGTTTCTCAACT
TTTGTTTTTGTTTTAAGCTCTATGAAAAGACAAAGCAACGCTGTCAACTT
TTGAGTAATTTTTGACACTGTCAAGATGAAATATATATCATTTATTGGGT
GGTCATCAAAGATAGTTATAACAGTTGGGACTTGTGTATTCTCTAGGCTT
ACCGATGGTCGCTGCTGCAGTAACGTCAAGATTTACCAAAAGCCAATTTG
ACAGACCTGACAATGAACTGTAAGTGGCAGGACTTTCAACAATCAATAAG
GACTCGTAGCTAGGGGACACTCAAATAAGAGTTTCATTATCTGCAAAACT
TTCTGATTTTTTCCTTTCCCGATGGCTTGGTAATACATCTTGTTTGCCTC
GCAGTTTTGATGATGGAGCTCTATTTAGACAGTGATTCAAATTCACTGAT
TCAGATTCCTCAAATTTTACAAAAAATGAACAGACTCGATCTTTTTAGTT
ATTTTTTTACCATACAACAATGGACTTGATACAGTCGTGAGTGTTGACAT
ATTGTCATAAAAAGCCGAACTAAGAGACAGGGTTCTATTTTAGAAAGGAC
GACAATCAAAAAGATTTTTCAATTTTTCTTAGATGCATCTTGAAAGGTGA
TATTTTCATTTATTCGACGATCATTCCAATCACATGTATCATTTTTTTCA
ACCTCATTGTTTTCATAATGGTCATGCGCAAAGTTCATGGTCATTTCAAA
ACACGTGCTTCATTTCAACAAAAAGAAGACAAGCAGATCTGGAAAAGAGC
GAAGGCTACAATGATCTGTATGGTTCTATTAGGATTGACCTGGATTTTCG
GATTCATGGCTGTTGGTGATTTACATGCTCCTTTACAATGGCTGTTTTGT
ATCACGAACACTTTACAAGGTGTTTTTGTTTTTGTTTTCTACGTTCTCCT
CAATGATGAAGTGCGAAAAGCTTGGAATTCAAGATAGTCTTCTGCGTTAA
CGCTTACTTCACACAAAACCAAGAAAAAAACATCGGAAAATGAATTCAAA
ATCGGAACATTGAGAAATCATGCAAGAACTAAACAAATGAAAGATAAATG
TGAAACTTTTTAGGACTTTGATATACAGGGTGTCCCTAATTAAAGTATCG
AGTTTGAACATGCGATTGAGTAGAAAAGTTTGTGTGTGTTATCGCTAAAA
TATAAGGACGCTCTCCGTCACACAGGCTATTACAAAAGGTAGTGACAACG
TATAAATTAATCGTAATGACAAAGAAAAAAGAGGGAGAGCTTAAAATACA
ATTTTGTGAACACGCACATAAAACTTTCTACTCATAGTTGTGTTTCGACT
CGATACTTTAATTAGGGACACCCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004982XLOC_004982Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008899-exon-sc0000088-1575043694:374169..374265TCONS_00008899-exon-sc0000088-1575043694:374169..374265Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1575043694:373843..373992TCONS_00008899-exon-sc0000088-1575043694:373843..373992Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1575043694:372753..373278TCONS_00008899-exon-sc0000088-1575043694:372753..373278Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1575043694:372302..372530TCONS_00008899-exon-sc0000088-1575043694:372302..372530Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1575043694:371081..371370TCONS_00008899-exon-sc0000088-1575043694:371081..371370Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1575043694:370847..370919TCONS_00008899-exon-sc0000088-1575043694:370847..370919Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1575043694:369740..370483TCONS_00008899-exon-sc0000088-1575043694:369740..370483Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1510915933:374169..374265TCONS_00008899-exon-sc0000088-1510915933:374169..374265Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1510915933:373843..373992TCONS_00008899-exon-sc0000088-1510915933:373843..373992Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1510915933:372753..373278TCONS_00008899-exon-sc0000088-1510915933:372753..373278Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1510915933:372302..372530TCONS_00008899-exon-sc0000088-1510915933:372302..372530Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1510915933:371081..371370TCONS_00008899-exon-sc0000088-1510915933:371081..371370Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1510915933:370847..370919TCONS_00008899-exon-sc0000088-1510915933:370847..370919Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1510915933:369740..370483TCONS_00008899-exon-sc0000088-1510915933:369740..370483Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1491911889:374169..374265TCONS_00008899-exon-sc0000088-1491911889:374169..374265Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1491911889:373843..373992TCONS_00008899-exon-sc0000088-1491911889:373843..373992Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1491911889:372753..373278TCONS_00008899-exon-sc0000088-1491911889:372753..373278Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1491911889:372302..372530TCONS_00008899-exon-sc0000088-1491911889:372302..372530Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1491911889:371081..371370TCONS_00008899-exon-sc0000088-1491911889:371081..371370Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1491911889:370847..370919TCONS_00008899-exon-sc0000088-1491911889:370847..370919Clytia hemisphaericaexon
TCONS_00008899-exon-sc0000088-1491911889:369740..370483TCONS_00008899-exon-sc0000088-1491911889:369740..370483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:369740..374265 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29608	0.272452	1.13859	0.950524	0.337489	0.208949	0	0	0	0	0	1.4873e-06	0	0	0.773015	0.237356	0	1.02536	0.493418	2.40272	0.227917	0.355143	0.35566	0.698487	0	0	0.114692	0.296911	0	0.079379
Blast
[Close]
BLAST of TCONS_00008899 vs. Swiss-Prot (Human)
Match: AGRG6 (Adhesion G-protein coupled receptor G6 OS=Homo sapiens GN=ADGRG6 PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 6.490e-37
Identity = 151/597 (25.29%), Postives = 286/597 (47.91%), Query Frame = 2 
Query:   20 VAQWEPLDISSCRRNDQEKQLLNVNLSKIDSETVGEFAKQISKLTSNTSLINNKQTVQNLIKVLEKIINIQ-NTKIEVKENVLKXXXXXXXXXXXXXXXXXKNQLLSFVDKITENIQQPS---FNYSGQNLAVSIQTQNRSQATN-IKSF------DNDEKIEIEFNNYDNLTVVGNISQVSSIYIPETTFTDILSDIKIIS-----TAYKKDTFFSTTPSNKTQTGSYIMSASIKSQHIENLTDPIKLKFKIDERKS--NGTCVFWETDGNY----WSTRGCTTLVNS-KNEVTCECNHLTNFAILFNVYHVDEDV-LKSQEVLNYVSLVGCVLSIVGLLATVIALGCSTGQRKTRRKTGQFMIINFCIALVLLLCVFILITNMEHFHHSSTILCHNLSAILHFTIMATFCWTAAQAIFLYKKTVLATKNFQGDNMKSYYASLCL-AWGLP--MVAAAVTSR-----FTKSQFDRP-DNELCILKGDXXXXXX-XXXXXXXXXXXXXVFIMVMRKVHGHFKTRASFQQKEDKQIWKRAKATMICMVLLGLTWIFGFMAVGDLHAPLQWLFCITNTLQGVFVFVFYVLLNDEVRKAW 1708
            V  W P+DIS+C +                     E A QI  LT++   + +   + N+++ +++I+N + N  I +   ++ I  NI+  +DS +   +   L + +D++   I   S    N + +NLA+S+ +      TN I +F      +N+   +++F +       G +  ++S+ +P     ++  +  ++      T + K   F      +    SY+M+ SI +  I+NL DP+++K K    +   +  C FW+ + N     W+T GC    +S  +E  C CNH T+F +L ++      +  ++ +VL ++S +GC +S +   AT++         K RR     +++N   AL+ L  +F+L   +  F+     LC  ++ +LHF ++ATF W   +AI +Y   V     +    ++ Y    C+  WGLP  +V+  + SR     + K  + +   +E C ++  +  Y T       + F N+ +FI+VM ++ G    R++   +E  ++ +  ++ +    LLG+TW F F A G L+ P  +LF I N+LQG+F+F+F+  + + V+K W
Sbjct:  569 VTYWGPVDISNCLKE------------------ANEVANQILNLTADGQNLTSAN-ITNIVEQVKRIVNKEENIDITLGSTLMNIFSNILSSSDSDLLESSSEALKT-IDELAFKIDLNSTSHVNITTRNLALSVSS--LLPGTNAISNFSIGLPSNNESYFQMDFES-------GQVDPLASVILPPNLLENLSPEDSVLVRRAQFTFFNKTGLFQDVGPQRKTLVSYVMACSIGNITIQNLKDPVQIKIKHTRTQEVHHPICAFWDLNKNKSFGGWNTSGCVAHRDSDASETVCLCNHFTHFGVLMDLPRSASQLDARNTKVLTFISYIGCGISAIFSAATLLTY---VAFEKLRRDYPSKILMNLSTALLFLNLLFLLDGWITSFNVDG--LCIAVAVLLHFFLLATFTWMGLEAIHMYIALVKVFNTY----IRRYILKFCIIGWGLPALVVSVVLASRNNNEVYGKESYGKEKGDEFCWIQDPVIFYVTCAGYFGVMFFLNIAMFIVVMVQICGRNGKRSNRTLRE--EVLRNLRSVVSLTFLLGMTWGFAFFAWGPLNIPFMYLFSIFNSLQGLFIFIFHCAMKENVQKQW 1125
The following BLAST results are available for this feature:
BLAST of TCONS_00008899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGRG66.490e-3725.29Adhesion G-protein coupled receptor G6 OS=Homo sap... [more]
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