TCONS_00008685 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008685
Unique Name	TCONS_00008685
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2109

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000087:29385..40234+

transcript sequence

>TCONS_00008685 ID=TCONS_00008685|Name=TCONS_00008685|organism=Clytia hemisphaerica|type=transcript|length=2109bp
gcaaaacaaaaaatcaaatggtgCAGTTTGTTTGCTAAACCCTCGGTTTA
GCGAACGaacaaaaaacagaaaaaagactgTTGGCTTTGATCGTCTGTTT
AGgtaaacttttaaatgaatcaCTGCGTTCGCTAAACcctctgtttcact
ttttttggtttttggctAAATGGTATGCACCCTAAAGCTTtgcaattttc
attttaaacaatAACAGAATTTAGGCAAAATGCCAATGCAGAAAACTTAT
AAAAGATATGCCTCCCTTGGCTCATTTGGTGTGGTTGGTAGCACACGTTC
TAACTTATTGATGATCAATCAGATCCCTTATTTATCACATTCGAAGAAAG
AGAACACAACTTGTTGTGTGACTGCAGCTTTAGAGAGTGTAATCATTTGG
GATGTTAGAAGAGGAGAGAAGattgcttttttgaagggcAATGAGGATGA
GGTTACATCAATTGCCCATTCTAAAAAAACATCACTCATTGCTGTTGGTT
ACAGCAATGGTACAATTAAGTTATGGGACCTTAAAAACAATACCAGTGAT
GTGTTATTCAGTGGGCACAGATCGGCTATTTCTTGTTTGTGTTTCGAGAA
ATCTGGCACAAAGCTCATCTCTGGATCCACAgataCTGATATTATTGTTT
GGGACATAGTCGGTGAAACTGGCTTGTATAGATTGAAAGGACACAAAGGA
ATGATAACTGACTGTGTTTTCATGACCACGCACAATGTAATGATATCAAG
CTCCAAGGACATGCTTGTTAAATTCTGGGACTTGGACAATCAACATTGCT
TTTTAACAATAGTTGGCCACAAGACAGAGGTTTGGAAATTGTGCTTATTG
AACAATGAAACAAGGCTTATCACTGGTTCTGGTGACGCTGAGTTACGATC
TTATGAAATTAAAGAGGCTAGTGATAAAGAATCTTCAGGACTGTTGAGTT
GTGAATTGCTTGGCTCGATTTTGAGAGGTGGAAAAGGACGAGTCATCTCA
TTATATTTAGAAGAAAAAGGGCAATACTTAGCATGTCATGGTGTAGATTC
AACATTAGATTTATTTGAAATTGTCGATGAAGATGATATACAAAAAGCTT
TGAAGAAAAGACgcaagaaaattataaaaaagcaaaagaaaatgcCAGAA
GCAGAACAAATTGACGAGGATAAGATATTGGTGGAGCGAGAAGTGACAGA
TGAAATTAAGAAGGTCCAGTCATTCAGAATGTCACAAAAATTAAGATCAG
CCGCAATATCCTACAATAATACCAAAGAAGAGATCAAAGTTTTGTCTATG
TTCATCAATAACTCGTTTGGATATTACAAGATCGACTTGAGCGCTCTCCC
TACAAAATGTCAACTGCAATCCTTGATTTCAAACATGGGTCACCGTTCTG
ATGTCAGGACAGTGGGGTTCAATTCAGATGCTACCTTGATAATGACTGCT
TCTGGAGAAAGTGTCAAAATTTGGAATAGgagtACACAAAAATGTATACG
CACGATGGACTCtgattattgtctttgttcaaTGTTTGTGCCTGGCGAAC
GACACGTGATCGTCGGAACAAAAACTGGTAAATTGCAATTGTTCGACATC
AGTTCTGGAATTCTCTTGGAAGCTGTTGATGCACACGAAGAAGCTGTATG
GAGTATTGCACTTTCTCCTGATAAAAACGGGTTTGTATCAGGAAGTGCTG
ACCACGAAGTCAAATTTTGGGAATTCGATTTGATCATCGACGAAGAATAC
TCCTCAATGGGTAAACGGCTAAGTATATCACACACTCAGACATTGAAAAT
GACAGAAGAAGTTCTTGCATTGAAATATAGcCCCGATGGTCGATTCTTAG
CCGTGTCTTTACTGGACAGCACagttaaagttttctttgctGATACTCTA
AAgTTCTTCTTATCATTATATGGACATAAGTTTCCTGTGCTTTGTATGGA
TATCTCGCTGGACAGCACACTTTTAATCACTGGATCGGCtgataaaaaca
tcaaaatttgggGATTAGATTTCGGTGATTGCCACAAATCCATATTTGCC
CATGATGACAGCATCACGTCGATTCAGGTAACCATATTTCTTCTAAAACG
TTATTTTTC

Run BLAST on NCBI

transcript from alignment at sc0000087:29385..40234+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008685 ID=TCONS_00008685|Name=TCONS_00008685|organism=Clytia hemisphaerica|type=transcript|length=10850bp|location=Sequence derived from alignment at sc0000087:29385..40234+ (Clytia hemisphaerica)
gcaaaacaaaaaatcaaatggtgCAGTTTGTTTGCTAAACCCTCGGTTTA
GCGAACGaacaaaaaacagaaaaaagactgTTGGCTTTGATCGTCTGTTT
AGgtaaacttttaaatgaatcaCTGCGTTCGCTAAACcctctgtttcact
ttttttggtttttggctAAATGGTATGCACCCTAAAGCTTtgcaattttc
attttaaacaatAACAGAATTTAGGCAAAATGCCAATGCAGAAAACTTAT
AAAAGATATGCCTCCCTTGGCTCATTTGGTGTGGTTGGTAGCACACGTTC
TAACTTATTGATGATCAATCAGATCCCTTATTTATCACATTCGAAGAAAG
AGAACACAACTTGTTGTGTGACTGCAGCTTTAGAGAGTGTAATCATTTGG
GATGTTAGAAGAGGAGAGAAGGTAATTTTGACCTCTTCTTATTTTATAGA
ATGCTGTATAGCTTTAAAATTGTACTTTTTAATAAGTAcattaacttttt
taataaataagAATTGCCACTAATTGTAGCCTCAAATTGTTCGCATTCTG
GTCTTATGTTTAGGACTAAGATCAATTACCCTAGGCTTACTCTAATTTAT
ACGAATTTTACCCTTAATTTGCTTAAAGTTCTGTAATTCCAGGCCCAACT
TTGTTCTCAAAATGATCCTTAATCCTATGGCCTTTTGCGGCCTTATTTTT
AAGAAGAGcatttatatatttattatttctaaaaattattgttttaaaaa
ttttcatttagattgcttttttgaagggcAATGAGGATGAGGTTACATCA
ATTGCCCATTCTAAAAAAACATCACTCATTGCTGTTGGGTAAATACTCAT
TAAACATCAGTGCTATAGAAACTATATTTGTTTATAATGAAATCTGATTT
TTGCTAGCTGATCTATGGTAACAATGTTATAATACCGGTTGAcccagaaa
aaagtaaaagGGTTTGATGGCtaactgttttcaaaaaatatacagttgac
gctctctaatttgacgttctaTAATTCAATAAGCTCCCCTTTTCAATCAA
ATCGATAGTCATCGtcaaatttcttaagaaactctcataaaaaaCACTCT
ACTATTCTACATTCTATGTTTCGATAAGTTcccattttcaatgaaaattt
gaagtccctTCAAGGTTTTCTGCTCCCTAATTCAATTTCTGGCATTTATG
Gttgatttcttttcaaatttttgaatttttttgtccaaacattcaaattt
tccaaaacgaaatttaaaacaaaaacagacaGTCAGAAGATGTTAGCCTA
AAAACTCGAGTCTTATCTATACTTTCCCAGCTCTATAATCTGATATTTGC
CTTGTTTTATTGAATTAGAGAGACttcctactattcgatacgctcctgTA
TTTGATGAAATTggaattccccttgaaaatctaATTAGTGAGTGTCAACT
GTAAtaacttttgatgattttttttttatcattgtaaagtggaaaggcaa
acttaaaacttggtatataactttttaaatttggttgaGTGGTTCTCAAA
TTGTAAGCTTTggaagtcaaaatttagtttgGGAAAAGTCCAAAAACACA
TTAAAAATGGGGTatcaaattaatgcaattctatGCAGAAAAcctcttat
tttcactattttgatAACTTTTACGACTCAATTAAAGCTGATTTTTATAA
ATTATCCTAACAAAGAAAAGTTATGGCGAAAATTAGGAAATCAGTTATTA
Tgagcgatttaaaaaaatatttagtgaaaaatgttaaaaaatgcttaatt
tgattttgattcgtttttggactttttcaaaagtgacttttgactttaaa
agcttataacttgagaaCCACTGTACCAACTTTAAAAAGCCCCCAGTAGT
AATAGTGTTATCTCTTTTGAATAATGGTTTGAGATATTATATTATAATCG
TCTTGAGCAAaaccttttttctcaaaagtttcCAAAGTTTAATATCCAAG
TTTAAGTATTTGTTGCATGTCCCTGATCTTTGTAATTTATAATGGTGTTT
TCTGGGCctatcaaaaatttatttatttcattatatttgttgATTATTTC
AATACTTCAAGAATGATGGTTTACATTATCAGtgattttaaattaaaata
atatttccATTTTTAATAATAGTTACAGCAATGGTACAATTAAGTTATGG
GACCTTAAAAACAATACCAGTGATGTGTTATTCAGGTTGGCCATTTTGAT
TATCTCTTCTTGCATAGTACCATCAACtaaatatttgtttatttttaact
GTTAATTCAGACTCCTACACTTGAGGAATGTGATAGCAGTCATGTGCTTG
CACACACATGCCTGAAATTTCCCCAGGGGTGTGATCAATCACACAACAGA
AATTTAGATCCCCCCATCCTGTACTGCACACTTTTAGACAGCACTCCTTG
TCACAATCCCTAATCTCAAAACTAACAATAGTAAAAAGGTAACTCTTACC
AGATGTATGTATATACTATGTAAATGACCCAGTTACCAGCacatctaatt
tttttttttttaatatcatATTATTGTTTTAGTGGGCACAGATCGGCTAT
TTCTTGTTTGTGTTTCGAGAAATCTGGCACAAAGCTCATCTCTGGATCCA
CAGTAAGCTAGACATTAAATTATAtgattgactttaaaatttagaaaact
aATGAAATGTGTAATCACTGGGAACTGTTTCAAACTGTTAAgggtttttt
ttcaagtcatctattataaactacttttttttttttttaggataCTGATA
TTATTGTTTGGGACATAGTCGGTGAAACTGGCTTGTATAGGTAATATTTC
ACAAAAGGCATAATGACGTAGATTGAAGGAAGATAGAGAAATTTCTTTGT
ATTCATTAAAACATTAATCTAAGGTCTTTCCTCTAAACATTTTTTGCATT
CTCGCGGGCAACCTTCCTAATTTAGCTAGCAGCATGAGAttgttatttat
aaaaaatttattcattaaACTTATTTAGATTGAAAGGACACAAAGGAATG
ATAACTGACTGTGTTTTCATGACCACGCACAATGTAATGATATCAAGGTA
AAATGGCTCTCaaattattattaattataCACTGCCACATTAATCATAAT
GCTTtgctttgaaaagtttttattcAATCGATATCTGTACAAAAATTAGC
TGCTTGaataaatttttcgaatttGTTCTAGCTCCAAGGACATGCTTGTT
AAATTCTGGGACTTGGACAATCAACATTGCTTTTTAACAATAGTTGGCCA
CAAGACAGAGGTATATCTCCCTTTTGATaagtatttttcaaattatttga
tAATTCTAAAATAGATTGACCTCAAAACTGCTGGATGATAAAGAAGTTTT
TCAGGTTATTTAATCTACAAAATTCTGCTATTATAGGAAAAATTGAGCAA
ATTGAATCTTTTCTTCCATAAAGGAGAACCTGCAGGAAAAGTTACATAGT
TTTAGTCAAACTAAAAATTGTTGCCTTTTTATAACAATTCTTTACAtaat
aatattatattgttttttaaattgtaaGGTTTGGAAATTGTGCTTATTGA
ACAATGAAACAAGGCTTATCACTGGTTCTGGTGACGCTGAGTTACGATCT
TATGAAATTAAAGAGGCTAGTGATAAAGAAGTAAGAAAATTATTTGTCCA
GTTTGATTTTATACTCCTTTTTAGATCTTAAAACGTGGGATTTTTTCTGC
CTTGGTCAAGTTTataaaaagtacattttttGTCTCAAAGTTATTAGAAT
TTCGAAGATTCTATATTTTCAGGCAACTTGTATGAAAATTTGACATTCAA
CATACTCttctaaaagaaattaaaaattggaaattttctcATACTTTTAG
TCTTCAGGACTGTTGAGTTGTGAATTGCTTGGCTCGATTTTGAGAGGTGG
AAAAGGACGAGTCATCTCATTACATTTAGAAGAAAAAGGGCAATACTTAG
CATGTCATGTACGGATACTTTATTTTGTCTTGcttatttggtatttttaa
acATATATTTTGCTTCAAATTCAAGCCATTGaactttctaatattttttc
tgaACTTAAGCTTATTAATTAAATTTGATAGGAGTTCTTTTAAGTTTTAG
CATAATTTTCTATCAAAACCCTTCAATAAGAATTATTGAAAAATCACTAT
CACCGTTACAGTAGAATCCTGGATTTCTTGCCCGCTGTCTAATTAATACA
ATGCATATTTTATTTTAGGGTGTAGATTCAACATTAGATTTATTTGAAAT
TGTTNTTTCAGGTTATTTAATCTACAAAATTCTGCCATTATAggaaaaat
caatcaaattgaATCTTTTCTTCCATAAAGGAGAACCTGCCAGGATAAGT
TACATAGTTTTAGTCAAACTAAAAATTGTTGCCTTTTTATAACAATTCTT
TACAtaataatattatattgttttttaaattgtaaGGTTTGGAAATTGTG
CTTATTGAACAATGAAACAAGGCTTATCACTGGTTCTGGTGACGCTGAGT
TACGATCTTATGAAATTAAAGAGGCTAGTGATAAAGAAGTAAGAAAATTA
TTTGTCCAGTTTGATTTTATACTGCTTTTTAGATCTTAAAACGCGGAATT
TTTTCTGCCTTGGTCAAGTTtataaaaattacatttttgtctCAAAGTTA
TTAGAATTTCGAAGGTTCTATATTTTTAGGCAACTTGTATGAAAATTTGA
CATTCAACATACTCTTCTAAAAGAAATTggaaattggaaattttttcata
cTTTTAGTCTTCAGGACTGTTGAGTTGTGAATTGCTTGGCTCGATTTTGA
GAGGTGGAAAAGGACGAGTCATCTCATTATATTTAGAAGAAAAAGGGCAA
TACTTAGCATGTCATGTACGGATACTTTATTTTGTCTTGcttatttggta
tttttaaacATATATTTTGCTTCAAATTCAAGCCATTGaactttctaata
ttttttctgaACTTAAGCTTATTAATTACATTTGATAGGAGTTCTTTTAG
CATAATTTTCTATCAAAACCTTTCAATAAGAATTATTGAAAAATCACTAT
CACCGTTACGGTAGAATCCTGGATTTCTTGCCCGCTGTCTAATTAATAAT
ACAATGCATATTTTATTTTAGGGTGTAGATTCAACATTAGATTTATTTGA
AATTGTCGATGAAGATGATATACAAAAAGCTTTGAAGAAAAGACgcaaga
aaattataaaaaagcaaaagtaaaaagttttttaaaatgaaaaatctatG
TTTGAAATCGACGTCCATAACAGAGAAATCCAAGAGAGAAATCCAAATCT
ctgcaaaatattttggaatgaagtatacattagtaaaataagaATACTGA
AAATTTTGGTCGTTACAAAAAGCAGAATCTGATTTATTCCAAGTGTGAAT
TGATTATTGATTGGTTCATTATTCCTTGATTTTAAAAGCAGGGTATAATC
TGgtataatattttgttttttaggaaaatgcCAGAAGCAGAACAAATTGA
CGAGGTATTAACAAGGAAGTTGAAATCTCAGCAAAGTTTTTTCAATAGAG
ATTATGCATTTGAAGAATAATAATATACAAATATGACTTGCAATTGAAGA
ACAatcaattttgacatttttccaAACTTTTTTACTAGGATAAGATATTG
GTGGAGCGAGAAGTGACAGATGAAATTAAGAAGGTCCAGTCATTCAGAAT
GTCACAAAAATTAAGGTAtgttttcttgtaatttttttttttcgccaATC
AAACTTCTTTTTGTACAGTAAAATCTGAAAGTTTGACATTTCACAATTGA
CCTTCAATCTTATACTTATAGGATATTATAgtacaaatcaaaacattgag
tcCTTCAAAATGAATACCTTTCTAAATTCATAGATCAGCCGCAATATCCT
ACAATAATACCAAAGAAGAGATCAAAGTTTTGTCTATGTTCATCAATAAC
TCGTTTGGATATTACAAGATCGACTTGAGCGCTCTCCCTACAAAATGTCA
ACTGCAATCCTTGATTTCAAACATGGGTCACCGTTCTGATGTCAGGTACA
AATAAGTTGGAATGGTTTTtcagaataaattttttttcttacataTAAAA
AAGATACTGTATTTCTGACTaaccaaaaataaggtaaattattaaaaaac
gtTAATCCCATAACTTTGTGCGGCCTCCTTACCCTTTctgtgccgatgtc
gtatatatccgacatgcaaattttcactctacttgccaatgtcggatata
tccgacatcaaatttatttttttttatatccgacataaaaaaatccaaat
agtAATAGTGACAGTATATATTAAGTGCTCAAAAGATTTATTTCAGGTTT
ATTTTAGTCTATCATAAAATATATATNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGAT
TTAGGTATAAATTATTGGGATTTAGGTATAAATTATTGGGATTTAGGTAT
AAATTATTGGGATTTAGGTATAAATTATTGGGATTTAGGTATAAATTGGG
CATTTCAACCAATTGCCTCAAGACTCTATGTTTGGAAAATAACAGATTAT
TTTATCCCTCTATTCAATATTCAGGACAGTGGGGTTCAATTCAGATGCTA
CCTTGATAATGACTGCTTCTGGAGAAAGTGTCAAAATTTGGAATAGGTAT
ATTAAAACTTCTTATTATCAGCCATTGAAAATCGTGAAGCTCAACAAGAA
AtagaaaattgctcaaattggTGAATGGTTGAAGACACTCTTAGCTCGTT
ATTAAACAAGTGTTTCCAGTCCCTGAACGCGGGCTTAGTATGATTGAGTG
TAAGCGGtgtaaaacattttcacatcTCCGTCATGCCCTTTTTATAATGC
AATCAAATGCTAGCACTCGCTCTGTAGTTGTCTTCTGACCAACAAGCAGA
ACCATTAGAAAGCCAATGATCCAGCATAACTCAAACTTGCAAATCATGCC
ATTCGCCGACATttgctttattttattttaaattttaacatctaattttt
ttttcaggagtACACAAAAATGTATACGCACGATGGACTCtgattattgt
ctttgttcaaTGTTTGTGCCTGGCGAACGACACGTGATCGTCGGAACAAA
AGTAAGTCGGGTTGTCCGAAAGCAATCCAATTTTTGTGGACAATTTGAAA
CTtattaatgaaaatttaaagCTTTCAAAGATTCAGaatttaccttatta
cacgaatattactagtcaatTTATTaaaacgaattgaaaaatttcgtgtt
aataaaaaacccttaattaaaaccagccgtggtctccttaaaaaagcatt
ttttgcgTGTTAAATTCAAGGaagttgaatacttgcctagtaatatttgt
gtaataaggtatttggAGGTCAACCCTTTTTTTATACATGAAGATACAGC
AAGATGTCACTAATTCCCAGTTCAGAACTCCCGAACCcccaaaatgtgaa
aatattAGAACCTTAGCTTTAGAATCATTAACCCACAACTCTATATAGCA
ACATTTTTACTGCATCCCATAGGTCTAAAGaatgaaatctaaaaatttat
tACTCAAAATGGGTATTGATTTGAAAATGGCTTTTAGTTTCTTGACCAGA
ACCTTAGGTGAAAAAAGAAGTTGTTTGACAGGATGTAGAAATTTGTTGTA
TTGAAAATCTTTTCTGTTTGAGATAAAGGGCTATTAACAGGCGCTGTTTT
CAAACACCCTCTAAATAGTAGTAGCACTCCCGTGTCTCTTGAGTTTCAGC
TCAACAGTGAAGACCTACTGTAAATAATCAGTTGCTTTTAAAACTGCCAG
TTGCAAAACAAACAGTGATAACACTTTGTCACCATTTTTAGACTGGTAAA
TTGCAATTGTTCGACATCAGTTCTGGAATTCTCTTGGAAGCTGTTGATGC
ACACGAAGAAGCTGTATGGAGTATTGCACTTTCTCCTGATAAAGTAAGTC
TGTATGACAATGCTGTCAATTTCTTAATACAGTGGAGTGTCTTGAATAAG
TTAAATGGATGCATTCAATACACTTTACTTCATTACATTTGTTTTCTTAA
ACCTCGATAATTACTTTCAGTTTATCAAATACATTCcgtgttgttgttgt
ttctcAATAGAACGGGTTTGTATCAGGAAGTGCTGACCACGAAGTCAAAT
TTTGGGAATTCGATTTGATCATCGACGAAGAATACTCCTCAATGGGGTAC
GGTTTTTTtatatactctcgggtacctaatagccgggggatttggaataa
gcgggggtggttggaaaaaatcgaaaaacttatgtaataagcggggggag
ttggaataaaaatgtcctgggtggaaaatttttgaaaaggaggctaatac
agcagaattaggacaaaagagggaactttcaaaaatatttttccaaaaat
taataagcggggggttggaataaaaatgtcctgggtggaaaatttttgaa
aaggaggctaatacagcagaattaggacaaaagagggaactttcaaaaat
atttttccaaaaattaataagcggggggctggaataagaatgtcctgggt
ggaaaattttcgaaaaattaattagcagggggggggacggctattaggta
cccgagagtacctttgattttttttctcaatattcTTATTTCCACTATCA
AGTTTAAATCAACAGTTTTTCTTTCCACAAATAAATCATTATGTAGGAAC
CATGATAAGCTTTTCCTTACGTGAGACCTAGTTTAGCGTCCATGCAACAC
TTATTCTAGAAGATGAGTTTTGTTACTTATTTATTGAATTTCTTTACAAT
GTTGATAATGCTCTTATTGTCGTTTTGGTTTTTAGTAAACGGCTAAGTAT
ATCACACACTCAGACATTGAAAATGACAGAAGAAGTTCTTGCATTGAAAT
ATAGGTAGgtacttcattttttttctgatcCTGCTTATGTTAACTCAAGT
TTAAAACAGTAATCACGACCGAGTGGTCTCCAATCTATCAATCAGGAAAG
ATTCTTTGTAGTTATGATTTTAGAAATATCACAattgataaaaagtaaaa
aaaatcttttattttatttaagcCCCGATGGTCGATTCTTAGCCGTGTCT
TTACTGGACAGCACagttaaagttttctttgctGATACTCTAAAggtaaa
aagaagaaatatcTTCTTGAGTTTTATTTATACTTAAAATTcctattttc
tttgattctcTAACTACATTCACAACAACTCGATCTTATTGTTTACTTCT
TGGTCTAAACGACTTCTAAACAACTTCCAGTTTGATACAACTATAATTAA
CAGATCAAGTTCATatattttgttttacttttcagTTCTTCTTATCATTA
TATGGACATAAGTTTCCTGTGCTTTGTATGGATATCTCGCTGGTAAGTTG
TTACCATTACCCATAAGCTTTACACTTGCCTTGACGTAATGTGGTATCTT
TTCACACAACCTTATTCAAAGTTATCTGacactcgatgtagaaatttctt
ccaatacgctaaagctctgaatgTCGGGAAAACTTTCAACATTTGGAAAG
CGGAATTTCGCCAGACTGCGTAGAGGATTTTACGGGTTGAGGCCTAAACC
CAAGCCCCCGTTTTTGAGGAATTTCTGGTCCAAGCACAGTATTTTCAGGG
CCGTTGAGCCCGACTGGAGGGAATGTGGTTCATCACAGGCCGACTGGTAT
TCCGGGAAATTAGCCCACTCCATTAGAGCCTTAGCGTGGGTaaccgccaa
tccgccatcggaatatcagatattATTCAAAGCAGTTCAAAGGCTGGTTT
GCAGGAATATGATAAAAATACCGTTTATTCTCAAATCATATAGGACAGCA
CACTTTTAATCACTGGATCGGCtgataaaaacatcaaaatttgggGATTA
GATTTCGGTGATTGCCACAAATCCATATTTGCCCATGATGACAGGTTAGT
ATTGTATGGCTTTTTTCAATATGACCTCTTTCCTTATTATAAGAAACAAC
TCCTTCAAATTCTAGAATGTGCCCTCTTTTCCAAATATCTTTTATTATGA
CTGTTGTACGAACAAGACGTCAACACAATCCAAGACATTTCATTGGGAAT
CTCACGCTATGAAAATGAACCCTCGAACTTTGAAAATTATGACACCTAAA
TTTATTATCGAGTGTTTTGATTTGAAGGTTGAGTATTAGTGGTGGGGTAA
TGTTTGATTTCAGGTGTAGGAGTTTTAACATGTACTGGGAAGTCTTTTTT
TGGTACGAACTTGCCTCCCCCCCTTTACACACTATTACAAAAGAAGGAGC
TcattgtttggaaattttgaaactaaTCTCATTTCTGTTTGTTTCTTTTC
AGCATCACGTCGATTCAGGTAACCATATTTCTTCTAAAACGTTATTTTTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004885	XLOC_004885	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000087	supercontig	sc0000087:29385..40234 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.06594	2.4989	0.659016	1.14365	3.81946	4.05072	3.92879	4.66488	2.25086	2.47194	3.21383	1.45429	1.67587	2.09628	3.12378	2.91636	2.67312	4.67387	0.376293	0.663309	1.61873	1.51756	4.75912	3.4606	4.14351	5.35639	0.747818	0.201124	1.75743	2.18777

Blast

[Close]

BLAST of TCONS_00008685 vs. Swiss-Prot (Human)
Match: WDR3 (WD repeat-containing protein 3 OS=Homo sapiens GN=WDR3 PE=1 SV=1)

HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0
Identity = 305/651 (46.85%), Postives = 435/651 (66.82%), Query Frame = 2

Query:  230 MPMQKTYKRYASLGSFGVVGSTRSNLLMINQIPYLSHSKKENTTCCVTAALESVIIWDVRRGEKIAFLKGNEDEVTSIAHSKKTSLIAVGYSNGTIKLWDLKNNTSDVLFSGHRSAISCLCFEKSGTKLISGSTDTDIIVWDIVGETGLYRLKGHKGMITDCVFMTTHNVMISSSKDMLVKFWDLDNQHCFLTIVGHKTEVWKLCLLNNETRLITGSGDAELRSYEIK----------------------------------EASDKXXXXXXXXXXXXXILRGGKGRVISLYLEEKGQYLACHGVDSTLDLFEIVDEDDXXXXXXXXXXXXXXXXXXMPEAEQIDEDKILVEREVTDEIKKVQSFRMSQKLRSAAISYNNTKEEIKVLSMFINNSFGYYKIDLSALPTKCQLQ-SLISNMGHRSDVRTVGFNSDATLIMTASGESVKIWNRSTQKCIRTMDSDYCLCSMFVPGERHVIVGTKTGKLQLFDISSGILLEAVDAHEEAVWSIALSPDKNGFVSGSADHEVKFWEFDLIIDEEYSSMGKRLSISHTQTLKMTEEVLALKYSPDGRFLAVSLLDSTVKVFFADTLKFFLSLYGHKFPVLCMDISLDSTLLITGSADKNIKIWGLDFGDCHKSIFAHDDSITSIQ 2077
            M + K Y RY +   FGV+GS + N++ +         + E        A E V IWD+R+GEKI  L+G + EVT +  S     +AVGY +G+I+++ L +   +V F+GH++AI+ L +++ G +L SGS DTDIIVWD++ E+GLYRLKGHK  IT  +F+   N++++S KD +VK+WDLD QHCF T+VGH+TEVW L LL+ E RLITG+ D+ELR ++I                                   E  +     +LSC   GSI+R G+ RV++L +++ G+ LACHG DS L+LF I+ + +IQK + K+ KK  KK K      + ++ ++ VE  + DEI++V + + S K++S  +  ++   E+K + +  NN    Y ++ S LPT   ++ S I+  GHRSDVRT+ F+SD   +++A+ +S+KIWNRST +CIRTM  +Y LCS FVPG+R V++GTKTGKLQL+D++SG LLE +DAH+ A+WS++LSPD+ GFV+G AD  VKFW+F+L+ DE  +S  KRLS+  T+TL++ E+VL + YSP+ + LAVSLLD TVK+F+ DTLKFFLSLYGHK PV+CMDIS D  L+ TGSAD+N+KIWGLDFGDCHKS+FAHDDS+  +Q
Sbjct:    1 MGLTKQYLRYVASAVFGVIGSQKGNIVFVTL-------RGEKGRYVAVPACEHVFIWDLRKGEKILILQGLKQEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITTLKYDQLGGRLASGSKDTDIIVWDVINESGLYRLKGHKDAITQALFLREKNLLVTSGKDTMVKWWDLDTQHCFKTMVGHRTEVWGLVLLSEEKRLITGASDSELRVWDIAYLQEIEDPEEPDPKKIKGSSPGIQDTLEAEDGAFETDEAPEDRILSCRKAGSIMREGRDRVVNLAVDKTGRILACHGTDSVLELFCILSKKEIQKKMDKKMKKARKKAKLHSSKGEEEDPEVNVEMSLQDEIQRVTNIKTSAKIKSFDL-IHSPHGELKAVFLLQNNLVELYSLNPS-LPTPQPVRTSRITIGGHRSDVRTLSFSSDNIAVLSAAADSIKIWNRSTLQCIRTMTCEYALCSFFVPGDRQVVIGTKTGKLQLYDLASGNLLETIDAHDGALWSMSLSPDQRGFVTGGADKSVKFWDFELVKDE--NSTQKRLSVKQTRTLQLDEDVLCVSYSPNQKLLAVSLLDCTVKIFYVDTLKFFLSLYGHKLPVICMDISHDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDSVMYLQ 640

The following BLAST results are available for this feature:

BLAST of TCONS_00008685 vs. Swiss-Prot (Human)

BLAST of TCONS_00008685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR3	0.000e+0	46.85	WD repeat-containing protein 3 OS=Homo sapiens GN=...	[more]

You are here

TCONS_00008685 (transcript) - C. hemisphaerica