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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008669 ID=TCONS_00008669|Name=TCONS_00008669|organism=Clytia hemisphaerica|type=transcript|length=928bp
GAAAAAAGTTGAAACCATCTTTGGGCCACCTTTTGATCACCAAGAATAGT
TCGCCCATCGCATTGACTTCTAATAGTAtctttttatttagaaaaaaatg
acacaaTTTCAAATAGCACCTTACGAAATTCAAAAACATGCTGCTCAAGT
ACAAGAGCTTTATGATAGATACTTGATACCTACTTATTTGAAAAGGCTTG
GGATCGGAGAAGACGAGAGAACACAATATTCAGACATTGAAGACGTCTTA
GATGTCAATGCTGCATATAATGAGAAGTTTGAAGGGTTTTCCTTTGTGGT
GATTGATAGTTCAGGCCAGGTCAAAGGCGTTCAATTAAGTTATATGTTTG
GAAAGGACGATTGCGAAAATGCTTTCCCTGAATTAAATCGTAAAGTTGTG
GAGGAAAATAAACATAAAGAAAGCATTATGAAATATTGTCAACATCGATA
TGAAGTTTGTAAAATATTGTATGATTTGTATGAAAGATATGGTTTTGAAC
GGGCCATTTATTTAGAATCCACGGTTTTACACCCTGATGTGCGTGGCAAA
GGGATAAATCAACGACTTACCGACCATCTTACGTCCCACACAGATGAAGT
TATTTTTGTTGAAGGTCAAATACCAGTGGATGTCTATATTAAGCATTATG
GCTTGAATGCAACTCTTATTGGTGAAATGGTAGCTCACAATGGGTTTCTG
ATGGTCACTCGTATTTTATCATATGATTTATTTGTTGTCCCCATTGAAAT
TCGTTTGTCGAAAAAGACAAAATCTATATCCTCCAAATTGTGATACACGT
CAACGTATAATTTTTTAATTGCATATCATATACATATCATATAGTTATAG
AGTCATATAGTCATAGAGTTTTTCATTCtgataattatttttagaagttt
ttaaaacctttttggTGGATATATCCAG Run BLAST on NCBI protein sequence of TCONS_00008669-protein >TCONS_00008669-protein ID=TCONS_00008669-protein|Name=TCONS_00008669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MTQFQIAPYEIQKHAAQVQELYDRYLIPTYLKRLGIGEDERTQYSDIEDV
LDVNAAYNEKFEGFSFVVIDSSGQVKGVQLSYMFGKDDCENAFPELNRKV
VEENKHKESIMKYCQHRYEVCKILYDLYERYGFERAIYLESTVLHPDVRG
KGINQRLTDHLTSHTDEVIFVEGQIPVDVYIKHYGLNATLIGEMVAHNGF
LMVTRILSYDLFVVPIEIRLSKKTKSISSKL Run BLAST on NCBI transcript from alignment at sc0000086:596835..597762 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008669 ID=TCONS_00008669|Name=TCONS_00008669|organism=Clytia hemisphaerica|type=transcript|length=928bp|location=Sequence derived from alignment at sc0000086:596835..597762 (Clytia hemisphaerica)
CTGGATATATCCAccaaaaaggttttaaaaacttctaaaaataattatca
GAATGAAAAACTCTATGACTATATGACTCTATAACTATATGATATGTATA
TGATATGCAATTAAAAAATTATACGTTGACGTGTATCACAATTTGGAGGA
TATAGATTTTGTCTTTTTCGACAAACGAATTTCAATGGGGACAACAAATA
AATCATATGATAAAATACGAGTGACCATCAGAAACCCATTGTGAGCTACC
ATTTCACCAATAAGAGTTGCATTCAAGCCATAATGCTTAATATAGACATC
CACTGGTATTTGACCTTCAACAAAAATAACTTCATCTGTGTGGGACGTAA
GATGGTCGGTAAGTCGTTGATTTATCCCTTTGCCACGCACATCAGGGTGT
AAAACCGTGGATTCTAAATAAATGGCCCGTTCAAAACCATATCTTTCATA
CAAATCATACAATATTTTACAAACTTCATATCGATGTTGACAATATTTCA
TAATGCTTTCTTTATGTTTATTTTCCTCCACAACTTTACGATTTAATTCA
GGGAAAGCATTTTCGCAATCGTCCTTTCCAAACATATAACTTAATTGAAC
GCCTTTGACCTGGCCTGAACTATCAATCACCACAAAGGAAAACCCTTCAA
ACTTCTCATTATATGCAGCATTGACATCTAAGACGTCTTCAATGTCTGAA
TATTGTGTTCTCTCGTCTTCTCCGATCCCAAGCCTTTTCAAATAAGTAGG
TATCAAGTATCTATCATAAAGCTCTTGTACTTGAGCAGCATGTTTTTGAA
TTTCGTAAGGTGCTATTTGAAAttgtgtcatttttttctaaataaaaaga
TACTATTAGAAGTCAATGCGATGGGCGAACTATTCTTGGTGATCAAAAGG
TGGCCCAAAGATGGTTTCAACTTTTTTC Coding sequence (CDS) from alignment at sc0000086:596835..597762 >TCONS_00008669 ID=TCONS_00008669|Name=TCONS_00008669|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000086:596835..597762 (Clytia hemisphaerica)
TCACAATTTGGAGGATATAGATTTTGTCTTTTTCGACAAACGAATTTCAA
TGGGGACAACAAATAAATCATATGATAAAATACGAGTGACCATCAGAAAC
CCATTGTGAGCTACCATTTCACCAATAAGAGTTGCATTCAAGCCATAATG
CTTAATATAGACATCCACTGGTATTTGACCTTCAACAAAAATAACTTCAT
CTGTGTGGGACGTAAGATGGTCGGTAAGTCGTTGATTTATCCCTTTGCCA
CGCACATCAGGGTGTAAAACCGTGGATTCTAAATAAATGGCCCGTTCAAA
ACCATATCTTTCATACAAATCATACAATATTTTACAAACTTCATATCGAT
GTTGACAATATTTCATAATGCTTTCTTTATGTTTATTTTCCTCCACAACT
TTACGATTTAATTCAGGGAAAGCATTTTCGCAATCGTCCTTTCCAAACAT
ATAACTTAATTGAACGCCTTTGACCTGGCCTGAACTATCAATCACCACAA
AGGAAAACCCTTCAAACTTCTCATTATATGCAGCATTGACATCTAAGACG
TCTTCAATGTCTGAATATTGTGTTCTCTCGTCTTCTCCGATCCCAAGCCT
TTTCAAATAAGTAGGTATCAAGTATCTATCATAAAGCTCTTGTACTTGAG
CAGCATGTTTTTGAATTTCGTAAGGTGCTATTTGAAAttgtgtcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008669-exon-sc0000086-1491911889:596835..597762 | TCONS_00008669-exon-sc0000086-1491911889:596835..597762 | Clytia hemisphaerica | exon |
| TCONS_00008669-exon-sc0000086-1510915933:596835..597762 | TCONS_00008669-exon-sc0000086-1510915933:596835..597762 | Clytia hemisphaerica | exon |
| TCONS_00008669-exon-sc0000086-1575043694:596835..597762 | TCONS_00008669-exon-sc0000086-1575043694:596835..597762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000086 | supercontig | sc0000086:596835..597762 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016181 | Acyl_CoA_acyltransferase |
Blast
The following BLAST results are available for this feature:
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