TCONS_00008408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008408
Unique NameTCONS_00008408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1104

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008408 ID=TCONS_00008408|Name=TCONS_00008408|organism=Clytia hemisphaerica|type=transcript|length=1104bp
CTGAAACCATCACCTCTCATACCTTTAAACCAATTGCAGGAAGACACTTC
GTACAACTCTTGGGTCGTTCCATTCGTTCCAATCACCACACTCTGGTGTA
CGGTAGATTCAAGTTCACCGGAATGACGTTCATCAGTGACGCTTCCGTTA
TCGGCCAAACACCGGTCCATGAAGATAACGGAACGTTAACGTTTCTGTTC
AAGAAGACACAGGGGAACGATTACACTATGACATTGGGTCAGAATTATTT
CGCCGGTGACCGAACCATCGGTAAAAAGATGGATCGCATTGCAAGGCTTG
TCTATGTTGTCAAATTGCCCGCCACTTCAGGTCAGGATTTGAAAATCAGC
GGTGGCAATGGTCAAGGGAATCCATCTACTTACATCCCTGTCacccttgC
CACTACAACCTCTACTCCTAGTACGACAACTGCATTGCAGACCACCACAA
CCACCACCACAACAACCACCACTACAACCGCCACCACAAGCCAATATACC
GAGGGTTCGACGACCACCATTCAACAAGTAGCAGTCACTTTACCAACAAA
CATCTTTTGGGAGCAGAATGAATACATCTTCGATGGCGTCACTCTAAACT
GGATCGATGCAGAATTTGGATGTCAGATGTACGATGCGCATTTGGTCAGT
ATTTTGTCCCAACAAGAGATGACTTTCTTAAGTGAGCAGTTCGATCAAAG
AGGAAGTAATTTTTGGATAGGCCTCAAAAGAGAAAATTGGGAACCATTCT
CTCAATGGTCTGATGGCAATACTTTGAATTTTACGCACTGGGACTTCGAA
AGACCTTTTGGTTCAAATGATGTCGAATGTGTTCATGTTGCGCTAAGCTC
ATCAGTAACCCCTCCTGCTCACCTATGGAGAGATGGTCATTGTGCAGCTG
AATACCATTATGTTTGCAAGAAAACAGCAACAAAGACGAGCGGTACAGTG
GTGTTCAATTCCTTTACTACCTCTTGGAACCAACatgaatatttttttgg
agGTAACTTATTGCAGTGGAACGACGCACATGGAGCTTGTGACAATCTTG
GAGGAAACCTGGCAAGCGTTCTATCGGATGACGAACTCGATTTTCTATCG
GCTG
Run BLAST on NCBI

transcript from alignment at sc0000085:190307..200958+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008408 ID=TCONS_00008408|Name=TCONS_00008408|organism=Clytia hemisphaerica|type=transcript|length=10652bp|location=Sequence derived from alignment at sc0000085:190307..200958+ (Clytia hemisphaerica)
CTGAAACCATCACCTCTCATACCTTTAAACCAATTGCAGGAAGACACTTC
GTACAACTCTTGGGTCGTTCCATTCGTTCCAATCACCACACTCTGGTGTA
CGGTAGATTCAAGTTCACCGGAATGACGTTCATCAGTGACGCTTCCGTTA
TCGGCCAAACACCGGTCCATGAAGATAACGGAACGTTAACGGTTTGtcat
ttaaatatatttttttacaatctGAGGTGTATAATAATAGTGATTATTTA
GTGATTTACTACCAGCCCGATTTCAACTTTCGATTTGTAAAATGTTTTTC
GGTAAATTGTTACCCCCCTTTATATTGGTCACTTTTTGACTACATGATTA
CCTCCTTTTGCATCTCGTTCTAATGATATATCAAAACTTTGTTGTCGACC
AGAAAGAAAATAATATATGCGATAATCTGACTTGAAACCGATATCATCCT
CTCTCTTCGTTAGTTTCTGTTCAAGAAGACACAGGGGAACGATTACACTA
TGACATTGGGTCAGAATTATTTCGCCGGTGACCGAACCATCGGTAAAAAG
ATGGATCGCATTGCAAGGCTTGTCTATGTTGTCAAATTGCCCGCCACTTC
AGGTAGGTTGGTTTTTAACTACATATTCACAACACCATGTGATCTATATG
ATATAGTCAATCTTTTTAACAGAGCATTTGATTTATTTCAGGTCAGGATT
TGAAAATCAGCGGTGGCAATGGTCAAGGGAATCCATCTACTTACATCCCT
GTCacccttggtaaaaatactttcttacatccctgtcatccttggtaaaa
atactttcttacatctctgtcacccttggtaaaaatactttcttacatcc
ctttcatccttggtaaaaatactttcNAATAGTGATTATTTAGTGATTTA
CTACCAGCCCGATTTCAACTTTCGATTTGTAAAATGTTTTTCGGTAAATT
GTTACCCCCCTTTATATTGGTCACTTTTTGACTACATGATTACCTCCTTT
TGCATCTCGTTCTAATGATATATCAAAACTTTGTTGTCGACCAGAAAGAA
AATAATATATGCGATAATCTGACTTGAAACCGATATCATCCTCTCTCTTC
GTTAGTTTCTGTTCAAGAAGACACAGGGGAACGATTACACTATGACATTG
GGCCAGAATTATTTCGCCGGTGACCGAACCATCGGTAAAAAGATGGATCG
CATTGCAAGGCTTGTCTATGTTTTCAAATTGCCCGCCACTTCAGGTAGGT
TGGTTTTTAACTACATATTCACAACACCATGTGATCTATATGATATAGTC
AATCTTTTTAACAGAGCATTTGATTTATTTCAGGTCAGGATTTGAAAATC
AGCGGTGGCAATGGTCAAGGGAATCCATCTACTTACATCCCTGTCaccct
tggtaaaaatactttcttacatccctgtcatccttggtaaaaatactttc
ttacatccctgtcaccctttggtaaaaatactttcttacatccctgtcac
ccttggtaaaaatactttcttacatccctgtcacccttggtaaaaatact
ttcttacatctCTGTCACCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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cttggtaaaaatactttcttacatccctgtaacccttggtaaaaatactt
tcttacatccctgtcacccttggtaaaaatactttcttacatccctgtca
cccttgtttaaaatactttcttacatccctgtcacccttggtaaaaatac
tttcttacatctCTGTCAtccttggtaaaaatactttcttacatccctgt
caccCTTGGTAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNTCCCTGTCAtccttggtaaaaatactttctta
catccctgtcacccttggtaaaaatactttcttacatctctgtcaccctt
ggtaaaaatactttcttacatccTTTTCAtccttggtaaaaatactttct
tacatccctgtaacccttggtaaaaatactttcttacatctctgtcaccc
ttggtaaaaatactttcttacatccctgtaacccttggtaaaaatacttt
cttacatctCTGTCATCCTTGGTAcaaatactttcttacatccctgtcac
ccttggtaaaaatactttcttacatctctgtcacccttggtaaaaatact
ttcttacatccctgtcatccttggtaaaaatactttcttacatctCTGTC
ACCCatggtaaaaatactttcttacatctCTGTCATCCTTGGTAcaaata
ctttcttacatccctgtcaccCTTGGTAAAATACTTACTTACATCCTTGT
CAtccttggtaaaaatactttcttacatctCTGTCACCCTTTGTAAAATA
CTTACTTACATCTCTGTCAtccttggtaaaaatactttcttacatccctt
tcatccttggtaaaaatactttcttacatctctgtcacccttggtaaaaa
tactttcttacatccTTTTCAtccttggtaaaaatactttcttacatccc
tttcatccttggtaaaaatactttcttacatccctgtGACCCTttgtaaa
aatactttctttcatccctgtcacccttggtaaaaatacttaCTTACATC
CCTTTCAtccttggtaaaaatactttcttacatccctgtGACCCTttgta
aaaatactttcttacaaCCCTGTCAtccttggtaaaaatactttcttaca
tccctgtcacccttggtaaaaatactGTCTTACATCTCTGTCACCCTTGG
TAAAATACTTACTTACATCTCTGTCAtccttggtaaaaatactttcttac
atccctttcatccttggtaaaaatactttcttacatccctgtGACCCTtt
gtaaaaatactttcttacatccctgtcacccttggtaaaaatacttactt
acatccctgtcacccttggtaaaaatactttcttacatctCTGTCATCCT
TGGTAAAAATTctttcttacatccctgtcacccttggtaaaaatactttc
ttacatccctgtcaccattggtaaaaatactttcttacatccctgtcacc
cttggtaaaaatactttcttacatccctgtcacccttggtaaaaatactt
aCTTACATCCCTTTCAtccttggtaaaaatactttcttacatccctgtGA
ATCTttgtaaaaatactttcttacatccctgtcacccttggtaaaaatac
ttacttacatccctgtcacccttggtaaaaatactttcttacatctCTGT
CATCCTTGGTAAAAATTctttcttacatccctgtcacccttggtaaaaat
actttcttacatccctgtcacccttggtaaaaatactttcttacatccct
gtcatccttggtaaaaattctttcttacatccctgtcacccttggtaaaa
atactttcttacatccctgtcacccttggtaaaaatactttcttacatcc
ctgtcaccCTTGGTAAAAATGCTTTCTTACATCCCTTGTCACCCTTGGTA
AAATACTTACTTACATCTCTGTCAtccttggtaaaaatactttcttacat
ctCTGTCATCCTttgtaaaaatactttcttacatccctgtcacccttggt
aaaatactttcttacatccTTGTCAtccttggtaaaaatactttcttaca
tccctgtcacccttggtaaaaatactttcttacatctctgtcacccttgg
taaaaatactttcttgcATCTATGTCacccttggtaaaaatactttctta
catccctgtcacccttggtaaatatactttcttacatccctgtcatcctt
ggtaaaaatactttctttcatccctgtcacccttggtaaaaatactttct
tacatccctgtcaccCTTGGTgaaaatactttcttacatctCTGTCATCT
TTTTTCAACAAATATCGCATGTGACATGTTACAATGACAAAAGAATTCAT
TAAAAGTTAGCACAGTTAGCCATCAAAACGTTATACTTTTTTTCTGCGTC
ACCCGGTATCATCATCAAATCTAATATTTAAACGTTTTATCGAAATAATG
GCAAGTGAATTAGTATCGTAGTAAATACTGTGATAAAACATTACAatgtg
aaattttgtaaatttgatgaATCAATGAAAGGATTTTTCTTATTCTTAGC
CACTACAACCTCTACTCCTAGTACGACAACTGCATTGCAGACCACCACAA
CCACCACCACAACAACCACCACTACAACCGCCACCACAAGCCAATATACC
GAGGGTAAGTATATAATTCCCAGCGTAATTTAACGCATTTTAACTCAGTG
ATGATTAAACATTTAGCTTAGTCACACGTGTCACCTTTCAGCTTTTCTAT
ACGTACTATCGTACTTTCTGTACATTGTAGTTAGACGCtctagttttttg
tttttttttgtctacACTATGAGAAATTTATAATTTCAGTTATTAGGTAG
CGTCAGTTGGACTGTTTCTTCACGCGTTTTCCTTTATATTTAGTGCTGCC
TTCGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNatttattttatttcataaacTATGAAT
TTTTGGGTAAACTTTGGGTGACCACAACCTCAAGCGAGATTGTTCTTCGA
ATTAACAATGTTACTTTGGTCGTACTCAACAGGTTCGACGACCACCATTC
AACAAGTAGCAGTCACTTTACCAACAAACATCTTTTGGGAGCAGAGTAAG
TTCGGTTGTTCTTacggaaaaacttttattttgaacTTGCAGATTGCATC
ATTCGAATAGGTTATTTCGCGGTGGTTCACTTTTTCAATGTATtcctatt
tctttttttcatcatGCTTATAACTCTTTCTATGCAGATGAATACATCTT
CGATGGCGTCACTCTAAACTGGATCGATGCAGAATTTGGATGTCAGATGT
ACGATGCGCATTTGGTCAGTATTTTGTCCCAACAAGAGATGACTTTCTTA
AGTGAGCAGTTCGATCAAAGAGGAAGTAATTTTTGGATAGGCCTCAAAAG
AGAAAATTGGGAACCATTCTCTCAATGGTCTGATGGCAATACTTTGAATT
TTACGCACTGGGACTTCGAAAGACCTTTTGGTTCAAATGATGTCGAATGT
GTTCATGTTGCGCTAAGCTCATCAGTAACCCCTCCTGCTCACCTATGGAG
AGATGGTCATTGTGCAGCTGAATACCATTATGTTTGCAAGAAAACAGGTA
TGATCTCTTCTAGAAttaaagaattgattttttgcTGACAGGTAGTCtta
taacagatcatccattgtGCTCATACCACGTGCTGCCATAAAGGCATATg
gtaaataaaaaagatttttcacctgatttttcagccaaaacattcaaaac
tgcGTTATCTTTTCCTTGAAAGTGAATGGGTTCTAATATTCATGTATTGT
TTATGTAATCTCCAAGGTAACCCTCCGTCCAAGGTAATTTTCCCTCTTAG
ATAACTATCCCCCAAGGTAACTCTCTCTCTCCAAGGTAACCCCAAGGTAA
CGCACTCCCCAAAGCAACCCTTTCCCAAAGGTAACACTCCAACTGAGGTA
ACCCTCTCTCCGCAAAGTAACCCTAACCCCAAGGTAACCCTCACTCCAAG
GTAACCCTTCCCCTCCAAGGAAATCCCTCATCCCAAATTTACCCTCTCTT
CACAGCCCTCTCTCCACAGTAACCCCTCTCTCCAAGGTAACTTTCCTTCC
AAGATAACCCTCTCTCCAAGGTAACCCTCTCTCCAAAATAACCCCCTTTC
CAAGGTAACATTCTCTCCATGAAACCTGTTTCAGTAGATCAGCGGCCGAA
ATAAAGAACTATGTCAGTTTGTGGGGTATTTATTAAACAATCCTGACaat
ctcattttcttttttctgaatTTCGCACGCTGTTATACAGTTCTATATAC
CTTCTAAAGGTGAACCTTCTTTCCAACAAGAAACCTTCAGGGTAGACCCT
CTTTTATATCAACATAGGAATatatcatcaaaaatcatctgacCTATGAT
GCCATTTTTTTAGCAACAAAGACGAGCGGTACAGTGGTGTTCAATTCCTT
TACTACCTCTTGGAACCAACGTAAGTTAATTTTTAACCTGGGTAATAGTG
CCTTTTCAAAATGTCCACTTTTAATTTTGCTACATCTCCTCATCGCCCCA
TCCATTCATTTTTCGTTAATGTTTCAAGGTTAAGAGAATTtacacaacaa
cacaacattaCCCCGCTCCCTTTCCGCTGTTAAAAGTTCGCATCCTGGCg
ccttttgctaatagctcactggaaaacttttttgaaactCTGAAACTTTT
GagcttttaatataatcctattagcaacACGTATAGCGAATTNAGGCTTC
TTTTTGTGTATTGGAACCTAAAAGCAAACATTTCTAACCATCAAAGTGTA
CAGAATACgatctctcgcttaccagaccctttttttgaacgcggtcttgt
atttgtatggtacaatataaaatacaacatttatgtacgcgtttttagcc
aatcagattgctcatatttttcatgttgacgatAAAACTGTATACTTCTA
TTCTTTtagatgaatatttttttggagGTAACTTATTGCAGTGGAACGAC
GCAAATGAAACTTGTGACAATCTTGGAGGAAACCTGGCAAGCGTTCTATC
GGATGACGAAATCGATTTTCTATCGGCTGAGTTAACGAGTAGAAATTTAG
ACAATACCACTTATTGGATTGGTGGGTTTTCATAATAATCAAGTTATTTT
CGTNTgccttttgctaatagctcactggaAGACTTTTTTGAAACTCTGAA
ACTTTTGAGCTTTTGATATAATCTTATTAGCAACACGTATAGTGAATTTT
ACAATCATACGCCAACTAGATCAggttttttgacgtttttgcgtATGCCT
GTAATAAAGACCAGGTAATACCCTGAAGTATTGAATAAAATACCTACTAG
ACTACGTTTGTTATCACATATTGGGAAATACATTGGTTATGATTTTTAAT
AGTTATCGCACGGTACAGAGTACAATATAGGATATAttcagatttttcgt
catattttccgagcctttagttTAGTACGAGTACCAGTAAAAGTGTGACA
ACCGgtttatcgtcaacttgaaaaatatcaacaagctTTTTTGCGTTTTC
TCTCTCCATTCGTGTACCgtctctttttctttgttttgttcttcTCTCTC
TGCAATCTTTTTACTTCtctattttgatgaaatcaacatcaaaacattcg
aaaaagattTGAACTTTTGAAGTTGTTGTATATTGGaagcccaggggggg
ggggggggaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNTTTTTGAACGCGGTCTTGTATTTGTATGGTACAATATAAAATACAa
catttatgtacgcgtttttagccaatcagattgcttatatttttcatgtt
gacgatAAAACTGTATACTTCTATTCTTTtagatgaatatttttttggag
GTAACTTATTGCAGTGGAACGACGCACATGGAGCTTGTGACAATCTTGGA
GGAAACCTGGCAAGCGTTCTATCGGATGACGAACTCGATTTTCTATCGGC
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004713XLOC_004713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008408-exon-sc0000085-1491911889:190307..190497TCONS_00008408-exon-sc0000085-1491911889:190307..190497Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1510915933:190307..190497TCONS_00008408-exon-sc0000085-1510915933:190307..190497Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1575043694:190307..190497TCONS_00008408-exon-sc0000085-1575043694:190307..190497Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1491911889:190770..190908TCONS_00008408-exon-sc0000085-1491911889:190770..190908Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1510915933:190770..190908TCONS_00008408-exon-sc0000085-1510915933:190770..190908Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1575043694:190770..190908TCONS_00008408-exon-sc0000085-1575043694:190770..190908Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1491911889:191640..191708TCONS_00008408-exon-sc0000085-1491911889:191640..191708Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1510915933:191640..191708TCONS_00008408-exon-sc0000085-1510915933:191640..191708Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1575043694:191640..191708TCONS_00008408-exon-sc0000085-1575043694:191640..191708Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1491911889:195506..195610TCONS_00008408-exon-sc0000085-1491911889:195506..195610Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1510915933:195506..195610TCONS_00008408-exon-sc0000085-1510915933:195506..195610Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1575043694:195506..195610TCONS_00008408-exon-sc0000085-1575043694:195506..195610Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1491911889:196089..196151TCONS_00008408-exon-sc0000085-1491911889:196089..196151Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1510915933:196089..196151TCONS_00008408-exon-sc0000085-1510915933:196089..196151Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1575043694:196089..196151TCONS_00008408-exon-sc0000085-1575043694:196089..196151Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1491911889:196294..196653TCONS_00008408-exon-sc0000085-1491911889:196294..196653Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1510915933:196294..196653TCONS_00008408-exon-sc0000085-1510915933:196294..196653Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1575043694:196294..196653TCONS_00008408-exon-sc0000085-1575043694:196294..196653Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1491911889:197470..197526TCONS_00008408-exon-sc0000085-1491911889:197470..197526Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1510915933:197470..197526TCONS_00008408-exon-sc0000085-1510915933:197470..197526Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1575043694:197470..197526TCONS_00008408-exon-sc0000085-1575043694:197470..197526Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1491911889:200839..200958TCONS_00008408-exon-sc0000085-1491911889:200839..200958Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1510915933:200839..200958TCONS_00008408-exon-sc0000085-1510915933:200839..200958Clytia hemisphaericaexon
TCONS_00008408-exon-sc0000085-1575043694:200839..200958TCONS_00008408-exon-sc0000085-1575043694:200839..200958Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:190307..200958 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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