TCONS_00008212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008212
Unique NameTCONS_00008212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008212 ID=TCONS_00008212|Name=TCONS_00008212|organism=Clytia hemisphaerica|type=transcript|length=2647bp
CCAGTGCAAAGTAAAAACAATGACAATCaattaaaatcaacaaaataaac
CTGGCATCTTATCTGTCATGATCAACACTAACGTCACAGATGATGGATTT
GAAATTTGTACACCAGATAGCAACCTGCTTGCTGTCCCGATTGGAATTGA
ACACGTGACCTGCTCATTTCCGAATTGTGGTCGTGTGGTAAAAAGCACAT
CAGCCCTACGTCTTCATATGTTGAAAAGTCATGGTGTTGGAAAAGTCACT
GATAAatcagtcaaaaagaagaaatatgCGTGTCCAGTTGTGGGTTGTTT
GAGGCATGCTATGTCACAGAAGAAAAGTTACTTTAACTCAATGTATTTAT
TGAAAAGGCATTATCTTCTTTGCCATGGTGAAAAGAACTTTCCATGTGAG
AGATGTGGAAGAAAGTTTGGAACTGAGATGTCATCCATACAACATTATCA
TCAATGTCGTAAATTGTTCTACTGCTCCTGTGGTCTCAATTACTCGAACA
AACATTTGTTGAAATCTCACCTGTTGAAGAATGACCGTCAGCAACATCAT
GCTGTACCTGACCCTGATGAAGAAAtggaaaaagagaaagaaaaacatca
aaGAGAAAAAGCAACAGCAGCACAAAATCAAATGGTTAGCCTTCCTTGTT
TTCTGTACATTCCAAAAGATAACACAAATGAGCTTCAACAACAACAACAA
CAACAACCCTCTCTGACAACCAACTCTCAATTGATTCAATATCCTGATAA
TGCAACCCTTCAACAAAATCAAGAACGATTCATTCGAATTTTACCCAAGA
AACAACAAAGAGCACATCAAGAACCATTCCAGTTTATAAATCCAACACAA
ATAGCAGGGTATTGTACATCTATGAATCCTTTCCAATCTTTACCCCATAT
TTTCAATGTGATGAACTCAAGCCAACTACAACCAGAGACTAGTCAACAAT
GTAAACAGCGCCAAATACTACCCTCCAGTGCTCCAGTGCAAACATTACCA
ACCCAAACTCAACAAGATCCAATGTTACAAACTTCCTCATCTCTTGATTG
TGAAAAGTCAACTGAAAAACCAATTCATAAAGCCAAAGTGAAAAAACCGA
AAgttaaaaaaccaaaaaaatccGAACCTAAgaagcaaaaagcaaaaaag
gtgaaaataaaagaatcaaGATTCGAGAAGCATATGAAATTTATCACTTC
AAAGGAAACACAGGAGATTCTAGCCGATGATGAACTTATTCAATCCACTT
TATCCAGCCTGCAGAATGCAAAATGCAATTGTGCGTTATTCAAAGCAGGT
AAGGTTTGCCGTCATTTCTCTCCCAAGAAAGCAGCCTTCATTCAAAAGTC
GAACAGACCTGCCAGTGAAAATTTGATCACAAACTTCACACAGACAATGA
GCACACAGGCTCAAGCCACTGAACAGGTGCACACTGGCATCCAGACTAAC
AACGACACGCAGTTCCCCATGGTGGAAGTCATGGAAACGTCCGATTTCAG
TATTCAATGTCGACTATCGAATACAGGTGTCACTTCACAAGACGCATCAA
CTCAAGACACAAGTAGTATGCTTCCCATCCCTATCATTGATAACCAGACA
CAAACAGACGATTTAGTGACCCTACTCGACAGCTTACAAACCAATGCGCA
TCTCGCTGATATGGAAACCCAAACATATTCTGCGGAAAACGACAAGTCTA
CCTTACTGGATGATATTCTGAGCGGAAAGACGTGGGATAACGAGGCCAGT
ATTTATGTGAGGGAGACACACAATGAGAATAATCACATCCCTTCATTATT
CATGACTGAAGGAGACACGGAATGCAAACAAAACAATTCCACTCAAACTT
TGGATGCGGCGTGTGGCGTTGCATTTGATGTGCACCAAAACACGACGATC
AGTGACAAAGACATTGTGTTACCTTCACAGAACAATCATTTCATTGAACC
TTTAAACATGAGTTTTGGTACACAGACAGTCTTTGATGACGACAGCCTTT
CTCAAGAAACATTCAGCTTTGGGACACAAACAGGAGGATTTGAGAGCAAT
ATGTTCAGCAGTTCAGCAACACAGACTTGGGATGTGAGCGAGACTTCAAT
AAATGCCAAAACCACAATAGAAACACAAACGGCAATTTCGTTTGCTGATC
TTTTGGATTCTTCGTTCATTGATGAATATCTGAGCACTGAGCAAAGCACC
TCAACTGAAACCCAAACTCCATTTGATCAAAACAGAGAGGTGGTCACCGC
TGAAACTCAAACCCTGTGAAtgatatcttttcaacgaaatttttcgctgt
ttatacttttttgtctttttgtctATCAAGCTTTTGTTTTTGCTATTTCT
TCAGAGATGATTTTTTATATCAATCTTTGCTTATAATAACCTTATACTTT
TAATCGTTCcataagaaaaattattttttgcttcgTTTTTCTAAGATTTC
GTTTTATTAGCACGTTATAGTACTTTGTTATAATATGTTTATTCctatga
aacttttttttcgtttttttgaaaaagtcgtTTGATgtacaaatttattt
tattatacATTGTTTATAATTTCTCTTTATGATAGATTTTTATAAAATgc
caacaaaaaagaaaacgttAATTTATACCTAGAGTTTATGTTCGACT
Run BLAST on NCBI

transcript from alignment at sc0000082:650946..655479-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008212 ID=TCONS_00008212|Name=TCONS_00008212|organism=Clytia hemisphaerica|type=transcript|length=4534bp|location=Sequence derived from alignment at sc0000082:650946..655479- (Clytia hemisphaerica)
CCAGTGCAAAGTAAAAACAATGACAATCAATTAAAATCAACAAAATAAAC
CTGGCATCTTATCTGTCATGATCAACACTAACGTCACAGATGATGGATTT
GAAATTTGTACACCAGATAGCAACCTGCTTGCTGTCCCGATTGGAATTGA
ACACGTGACCTGCTCATTTCCGAATTGTGGTCGTGTGGTAAAAAGCACAT
CAGCCCTACGTCTTCATATGTTGAAAAGTCATGGTGTTGGAAAAGTCACT
GATAAATCAGTCAAAAAGAAGAAATATGCGTGTCCAGTTGTGGGTTGTTT
GAGGCATGCTATGTCACAGAAGAAAAGTTACTTTAACTCAATGTATTTAT
TGAAAAGGGTTGGTTATGTTTTCTATACCTACAAAATTTAAATTTCAAAA
TTTAATGCAGCCTTAACTGGACATCTGTTTTGCTTAGTCACTCAGTCAAC
GTTTTATACCAAGGTATTAGTGGAGATCATTTTGAGAGATTTTCTCTCTT
TTGCTTGAGTTTTGACGATTTTTCAACAAAAACTAAAAATATTCCAGTTT
TTCGATAGGGAAGTTCCTGAGTGAACTAACATTGAGAAAACTTGAGGGAA
AAAATGGGGAAAAAGTTTAATGCTTTTCCACATTTCTAAATTAGTCAAAT
TTTTCAAAAAGTCCAGTTGCACAGAAGGATGGTTAATCTTGTTTACTTGG
AAACAATTTTAAGACATCTGTTTAACAATTGAACACGTCTACGTAGTAAG
TTTTGAAAAATTTTGCAATATTATATTATAGTTTTATCGTTTTTAGCATT
ATCTTCTTTGCCATGGTGAAAAGAACTTTCCATGTGAGAGATGTGGAAGA
AAGTTTGGAACTGAGATGTCATCCATACAACATTATCATCAATGTCGTAA
ATTGTTCTACTGCTCCTGTGGTCTCAATTACTCGAACAAACATTTGTTGA
AATCTCACCTGTTGAAGAATGACCGTCAGCAACATCATGCTGTACCTGAC
CCTGATGAAGAAATGGAAAAAGAGAAAGAAAAACATCAAAGAGAAAAGTA
TTCTATTCATTGTGTTAATTCTTTAATCTTCGGTTTTGAAATTTACTTAA
TTTGCATTGAAATGTTGAAATTTAGGATATTGGCTGCGGGGAATCTCTGT
GTGTATAGATTACTCTGCTAATATGCTAGAGGAACATCTCTTTTTTAAAG
GCTTTTTACATATACCGCAACTTTTCTATTCGACTTTATTTTTCATAGAG
CAACAGCAGCACAAAATCAAATGGTTAGCCTTCCTTGTTTTCTGTACATT
CCAAAAGATAACACAAATGAGCTTCAACAACAACAACAACAACAACCCTC
TCTGACAACCAACTCTCAATTGATTCAATATCCTGATAATGCAACCCTTC
AACAAAATCAAGAACGATTCATTCGAATTTTACCCAAGAAACAACAAAGA
GCACATCAAGAACCATTCCAGTTTATAAATCCAACACAAATAGCAGGGTA
TTGTACATCTATGAATCCTTTCCAATCTTTACCCCATATTTTCAATGTGA
TGAACTCAAGCCAACTANAAGTTACTTTAACTCAATGTATTTATTGAAAA
GGGTTGGTTATGTTTTCTATACCTACAAAATTTAAATTTCAAAATTTAAT
GCAGCCTTAAACTGGACATCTGTTTTGCTTAGTCACTCAGTCAACGTTTT
ATACCAAGGTATTAGTGGAAATCATTTTGAGAGATTTTCTCTCTTTTGCT
TGAGTTTTGACGATTTTTCAACAAAAACTAAAAATATTCCAGTTTTTCGA
TATGGAAGTTCCTGAGTGAACTAACATTGAGAAAACTTGAGGGAAAAAAA
TGGGGAAAAAGTTTAATGCTTTTCCACATTTCTAATTAGTCAAATTTTTC
AAATAAAAAGTCCAGTTGCACAGAAAGATGGTTAAATCTTGTTTACTTGG
GAACAATTAAGACATCTGTTTAGCAATTGAACACGTCTACGTAGTAAGTT
TTGAAAAATTTTGCAATTTAATATTATAGTTTTATCGTTTTTAGCATTAT
CTTCTTTGCCATGGTGAAAAGAACTTTCCATGTGAGAGATGTGGAAGAAA
GTTTGGAACTGAGATGTCATCCATACAACATTATCATCAATGTCGTAAAT
TGTTCTACTGCTCCTGTGGTCTCAATTACTCGAACAAACATTTGTTGAAA
TCTCACCTGTTGAAGAATGACCGTCAGCAACATCATGCTGTACCTGACCC
TGATGAAGAAATGGAAAAAGAGAAAGAAAAACATCAAAGAGAAAAGTATT
CTATTCATTGTGTTAATTCTTTAATCTTCGGTTTTGAAATTTACTTAATT
TGCATTGAAATGTTGAAATTTAGGATATTGGCTGCGGGGAATCTCTGTGT
GTATAGATTACTCTGCTAATATGCTAGAGGAACATCTCTTTTTTAAAGGC
TTTTTACATATACCGCAACTTTTCTATTCGACTTTATTTTTCATAGAGCA
ACAGCAGCACAAAATCAAATGGTTAGCCTTCCTTGTTTTCTGTACATTCC
AAAAGATAACACAAATGAGCTTCAACAACAACAACAACAACAACCCTCTC
TGACAACCAACTCTCAATTGATTCAATATCCTGATAATGCAACCCTTCAA
CAAAATCAAGAACGATTCATTCGAATTTTACCCAAGAAACAACAAAGAGC
ACATCAAGAACCATTCCAGTTTATAAATCCAACACAAATAGCAGGGTATT
GTACATCTATGAATCCTTTCCAATCTTTACCCCATATTTTCAATGTGATG
AACTCAAGCCAACTACAACCAGAGACTAGTCAACAATGTAAACAGCGCCA
AATACTACCCTCCAGTGCTCCAGTGCAAACATTACCAACCCAAACTCAAC
AAGATCCAATGTTACAAACTTCCTCATCTCTTGATTGTGAAAAGTCAACT
GAAAAACCAATTCATAAAGCCAAAGTGAAAAAACCGAAAGTTAAAAAACC
AAAAAAATCCGAACCTAAGAAGCAAAAAGCAAAAAAGGTGAAAATAAAAG
AATCAAGATTCGAGAAGCATATGAAATTTATCACTTCAAAGGAAACACAG
GAGATTCTAGCCGATGATGAACTTATTCAATCCACTTTATCCAGCCTGCA
GAATGCAAAATGCAATTGTGCGTTATTCAAAGCAGGTAAGGTTTGCCGTC
ATTTCTCTCCCAAGAAAGCAGCCTTCATTCAAAAGTCGAACAGACCTGCC
AGTGAAAATTTGATCACAAACTTCACACAGACAATGAGCACACAGGCTCA
AGCCACTGAACAGGTGCACACTGGCATCCAGACTAACAACGACACGCAGT
TCCCCATGGTGGAAGTCATGGAAACGTCCGATTTCAGTATTCAATGTCGA
CTATCGAATACAGGTGTCACTTCACAAGACGCATCAACTCAAGACACAAG
TAGTATGCTTCCCATCCCTATCATTGATAACCAGACACAAACAGACGATT
TAGTGACCCTACTCGACAGCTTACAAACCAATGCGCATCTCGCTGATATG
GAAACCCAAACATATTCTGCGGAAAACGACAAGTCTACCTTACTGGATGA
TATTCTGAGCGGAAAGACGTGGGATAACGAGGCCAGTATTTATGTGAGGG
AGACACACAATGAGAATAATCACATCCCTTCATTATTCATGACTGAAGGA
GACACGGAATGCAAACAAAACAATTCCACTCAAACTTTGGATGCGGCGTG
TGGCGTTGCATTTGATGTGCACCAAAACACGACGATCAGTGACAAAGACA
TTGTGTTACCTTCACAGAACAATCATTTCATTGAACCTTTAAACATGAGT
TTTGGTACACAGACAGTCTTTGATGACGACAGCCTTTCTCAAGAAACATT
CAGCTTTGGGACACAAACAGGAGGATTTGAGAGCAATATGTTCAGCAGTT
CAGCAACACAGACTTGGGATGTGAGCGAGACTTCAATAAATGCCAAAACC
ACAATAGAAACACAAACGGCAATTTCGTTTGCTGATCTTTTGGATTCTTC
GTTCATTGATGAATATCTGAGCACTGAGCAAAGCACCTCAACTGAAACCC
AAACTCCATTTGATCAAAACAGAGAGGTGGTCACCGCTGAAACTCAAACC
CTGTGAATGATATCTTTTCAACGAAATTTTTCGCTGTTTATACTTTTTTG
TCTTTTTGTCTATCAAGCTTTTGTTTTTGCTATTTCTTCAGAGATGATTT
TTTATATCAATCTTTGCTTATAATAACCTTATACTTTTAATCGTTCCATA
AGAAAAATTATTTTTTGCTTCGTTTTTCTAAGATTTCGTTTTATTAGCAC
GTTATAGTACTTTGTTATAATATGTTTATTCCTATGAAACTTTTTTTTCG
TTTTTTTGAAAAAGTCGTTTGATGTACAAATTTATTTTATTATACATTGT
TTATAATTTCTCTTTATGATAGATTTTTATAAAATGCCAACAAAAAAGAA
AACGTTAATTTATACCTAGAGTTTATGTTCGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004609XLOC_004609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008212-exon-sc0000082-1575043694:655122..655479TCONS_00008212-exon-sc0000082-1575043694:655122..655479Clytia hemisphaericaexon
TCONS_00008212-exon-sc0000082-1575043694:654433..654683TCONS_00008212-exon-sc0000082-1575043694:654433..654683Clytia hemisphaericaexon
TCONS_00008212-exon-sc0000082-1575043694:650946..652983TCONS_00008212-exon-sc0000082-1575043694:650946..652983Clytia hemisphaericaexon
TCONS_00008212-exon-sc0000082-1510915933:655122..655479TCONS_00008212-exon-sc0000082-1510915933:655122..655479Clytia hemisphaericaexon
TCONS_00008212-exon-sc0000082-1510915933:654433..654683TCONS_00008212-exon-sc0000082-1510915933:654433..654683Clytia hemisphaericaexon
TCONS_00008212-exon-sc0000082-1510915933:650946..652983TCONS_00008212-exon-sc0000082-1510915933:650946..652983Clytia hemisphaericaexon
TCONS_00008212-exon-sc0000082-1491911889:655122..655479TCONS_00008212-exon-sc0000082-1491911889:655122..655479Clytia hemisphaericaexon
TCONS_00008212-exon-sc0000082-1491911889:654433..654683TCONS_00008212-exon-sc0000082-1491911889:654433..654683Clytia hemisphaericaexon
TCONS_00008212-exon-sc0000082-1491911889:650946..652983TCONS_00008212-exon-sc0000082-1491911889:650946..652983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:650946..655479 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.98643	2.60023	1.5337	1.11065	4.37532	3.99251	3.71888	3.68485	2.55373	3.45299	3.73216	2.79015	2.17901	2.58901	2.26474	3.03346	2.66881	2.9013	1.71124	1.88859	2.43923	2.31814	9.81258	8.68716	7.2074	6.72132	2.23902	1.95002	8.52955	9.81864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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