TCONS_00008187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008187
Unique NameTCONS_00008187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length991

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008187 ID=TCONS_00008187|Name=TCONS_00008187|organism=Clytia hemisphaerica|type=transcript|length=991bp
ATCAAAGAAGAGCTGCTACATTTGTCACGGAAACATTCCTCAAAAGCTTT
TTTGTTCAACGTCGGCAAAACTTACGAAGGAGAAGATCAGATTGGCATCA
AGtTGCTTACAAACAAAGCGGATGATCGTGTGTCAAGAGTCTTAGCCAAA
TACGATTTCTACTTGATGCCCGTTTTCAACATTGATGGGTACAAATACAC
TTTCACGAATCGATCAACTCGATTGTGGCGCAAGACAAGGacaaaataca
aagaaagtaaACCACCTTATAAAACGTGTTACGGAGCAGACCCCAACAGA
AATTGGGATAGTCATTGGGAAACAGGTATCAACGCCAGTGACAATTGTAC
AACAGATTACTACAGAGGGCCTTTTGCAGGATCTGAAAAATGTGTTGCAA
ACGTCCAAACGTTTCTTCGTCAACTGAAGAACTTAACTTCGTATTGGAAT
ATCCATGCTTTCAGTCAGCTTGTCCTCACAACGTGGTCTTGGACGAGCGC
CCTATCGAAAGATTATCCAGAAATTAAGCGTGTTGGAGATGTTTTCGCCG
AAGCCGTCAGTAAAAGATATGGCACACATTATAAAGTTGGTCCACCTTCA
AGATTTCTGTACCCAGCTTCAGGTTGCAGTATTGATTTCGCACATGATGA
GCTGAAAGTCGTCTACTCTTACGGTCTAGAACTGAGAGATAAAGGCCATT
ATGGTTTCGTTCTCCCAGCTAATCAAATTCAACCAAGTGGAGAAGAGACT
AGTGACGCTCTACTAGCCGCTGTCCTCGCCATGAAACCAGAATATCAAAT
GTTTTCCTCTTCGAGAGCAACCAGGATACGATTCCTCAATGATCCAgcag
ttttgtttattttagtaTTTCTATCTAATCTTTTCATATATAGAAATTGT
TCAtaaatgtaaatattttttgaattatctTACCTTAGGGTTCAGAAATA
CAGGCTTGAAATAACCTGATCTACACATACCCATGTCCTTT
Run BLAST on NCBI

transcript from alignment at sc0000082:548991..551467-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008187 ID=TCONS_00008187|Name=TCONS_00008187|organism=Clytia hemisphaerica|type=transcript|length=2477bp|location=Sequence derived from alignment at sc0000082:548991..551467- (Clytia hemisphaerica)
ATCAAAGAAGAGCTGCTACATTTGTCACGGAAACATTCCTCAAAAGCTTT
TTTGTTCAACGTCGGCAAAACTTACGAAGGAGAAGATCAGATTGGCATCA
AGGTTAGTGTGGAGTTCTTTATTGAAGTGTAGATTCAAGAGATAGTACCT
TCACTATTTAACTTAACCACCATACGTTATCTATTTGACAGGTGACAAAC
GGTGACGGGCGATCAAAACCAGTTGTTTGGATTGATGGAGGTATCCATGC
AAGAGAATGGATTTCACCCGCCACGGTCATGTACTTCATGAACAAGGTGT
GTTTTGGGTATTAGGTGTTGTTTTTCTTCTTCTTTCCATGTTGCCAATGA
TCGACGAGGAAAGGTTTTTTCTTATTTTCTTTCGTTTTCAGTTGCTTACA
AACAAAGCGGATGATCGTGTGTCAAGAGTCTTAGCCAAATACGATTTCTA
CTTGATGCCCGTTTTCAACATTGATGGGTACAAATACACTTTCACGAATC
GATCAACTCGATTGTGGCGCAAGACAAGGACAAAATACAAAGAAAGTAAA
CCACCTTATAAAACGTGTTACGGAGCAGACCCCAACAGAAATTGGGATAG
TCATTGGGAAACAGGTACTCTATAATACCTTTCCAACTTTTTATTTCCGT
GCCTTGTAAAGGAAATTACTAGTGACTAGTTTGGGGAGATTAAAGTAAAA
TGTGTACCCTCTGTTAGGGTTAGGGTTAGTGTACCCCTGTTTCAGTGACA
CTGAATTTATTTTAAGTTAGTGAGGGTAGAGTAGTGTCGTAGTTAAATAA
CAATTGACTAAACATCGCCATACGTGGGATGAATGGGATGTAAATTTTAG
GGGATCTCAGAACACCAGGTCCAGATCTCCTTTAGCCAGTAAGGAAGAAT
GGAAAGCGAAATAAGTAAGTGACGTGGTGCTAATCTGATAGTTAATAACT
GTACTTTATTACAGCTCTTCTTTCCAAAAGCATCAATGTAAACTTTCAAA
CCTTATTTTCTAAGTATGATACCGCTCTTCAAATCATAGTATTGGAAACT
GTGTTGAATTCAAAGTCAGTTGTACAATAAATTTTCAAACCCACGTTCCC
TTGTTCAGGTATCAACGCCAGTGACAATTGTACAACAGATTACTACAGAG
GGCCTTTTGCAGGATCTGAAAAATGTGTTGCAAACGTCCAAACGTTTCTT
CGTCAACTGAAGAACTTAACTTCGTATTGGAATATCCATGCTTTCAGTCA
GCTTGTCCTCACAACGTGGTCTTGGACGAGCGCCCTATCGAAAGATTATC
CAGAAATTGTAAGCCTTTCAATTTTGCAACACGTTAAATTATAATCCATA
ACCAGCCGATAATTTTAAAAACAACAAAACAAAAGAAAGTCCGAAAAGAT
TCATTCTGACATCAAAAATCTTGAAGTAGCAGACGAAGTAATCTCAAGTA
AAATATGCAAATTTTTGCAAAGATTTTTGCCTGAATGATGTATTAGATAG
AATACGAAATATAGCATATTTTACTTGAGATCACTTCGTCTGTTACTTCA
AGATTTTTGATGTCAGAATGAATCCTTTCGGACTTTCTTTTGTTTTGTTG
TTGTTAAATTATAAATTCATACAATATTGACAAAGACGTGTTGTTACACG
CATCTTGTGTATTAATATTTTATTCTTCCTGGCATTCTTTCTACTTGTCA
CATTTAAGTAAGTTGCTCTCATTCTTCATTCATGTTTATTGGACTTCCAA
GAGACGGTAACATTGGTTGCAGATCAATATATCAATCGCCCATAACCATC
CTTAGCATTCTTCTTTTTATGTATAGAAGCGTGTTGGAGATGTTTTCGCC
GAAGCCGTCAGTAAAAGATATGGCACACATTATAAAGTTGGTCCACCTTC
AAGATTTCTGTGTAAGTATCCTTCAATGTTTCAAAAGCCTGGTTTAGACA
TTTCATACATTCTATACGAGCCTGATCAGGCCAACTTAAGTTTTAAGTGT
AAATGATGCAAATCAATTTGACTTGAGGAGTTGGTGAGTCAAAACTTGAG
AAAGAAGTTAATAATCAACCATCACCTCTTCATCTCTTTCGTTCAGACCC
AGCTTCAGGTTGCAGTATTGATTTCGCACATGATGAGCTGAAAGTCGTCT
ACTCTTACGGTCTAGAACTGAGAGATAAAGGCCATTATGGTTTCGTTCTC
CCAGCTAATCAAATTCAACCAAGTGGAGAAGAGACTAGTGACGCTCTACT
AGCCGCTGTCCTCGCCATGAAACCAGAATATCAAATGTTTTCCTCTTCGA
GAGCAACCAGGATACGATTCCTCAATGATCCAGCAGTTTTGTTTATTTTA
GTATTTCTATCTAATCTTTTCATATATAGAAATTGTTCATAAATGTAAAT
ATTTTTTGAATTATCTTACCTTAGGGTTCAGAAATACAGGCTTGAAATAA
CCTGATCTACACATACCCATGTCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004604XLOC_004604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008187-exon-sc0000082-1575043694:551366..551467TCONS_00008187-exon-sc0000082-1575043694:551366..551467Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1575043694:550854..551076TCONS_00008187-exon-sc0000082-1575043694:550854..551076Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1575043694:550160..550359TCONS_00008187-exon-sc0000082-1575043694:550160..550359Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1575043694:549557..549641TCONS_00008187-exon-sc0000082-1575043694:549557..549641Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1575043694:548991..549371TCONS_00008187-exon-sc0000082-1575043694:548991..549371Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1510915933:551366..551467TCONS_00008187-exon-sc0000082-1510915933:551366..551467Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1510915933:550854..551076TCONS_00008187-exon-sc0000082-1510915933:550854..551076Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1510915933:550160..550359TCONS_00008187-exon-sc0000082-1510915933:550160..550359Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1510915933:549557..549641TCONS_00008187-exon-sc0000082-1510915933:549557..549641Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1510915933:548991..549371TCONS_00008187-exon-sc0000082-1510915933:548991..549371Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1491911889:551366..551467TCONS_00008187-exon-sc0000082-1491911889:551366..551467Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1491911889:550854..551076TCONS_00008187-exon-sc0000082-1491911889:550854..551076Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1491911889:550160..550359TCONS_00008187-exon-sc0000082-1491911889:550160..550359Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1491911889:549557..549641TCONS_00008187-exon-sc0000082-1491911889:549557..549641Clytia hemisphaericaexon
TCONS_00008187-exon-sc0000082-1491911889:548991..549371TCONS_00008187-exon-sc0000082-1491911889:548991..549371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:548991..551467 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.58344e-08	0.929694	0.410559	0.717553	1.02755e-05	0.479378	0	0.46901	0	0	0	0	0	0	0	0	0	0	0	0	1.17558	1.23724	0	0	0	0
Blast
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BLAST of TCONS_00008187 vs. Swiss-Prot (Human)
Match: CBPA4 (Carboxypeptidase A4 OS=Homo sapiens GN=CPA4 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 3.797e-49
Identity = 90/210 (42.86%), Postives = 133/210 (63.33%), Query Frame = 1 
Query:  121 DDRVSRVLAKYDFYLMPVFNIDGYKYTFTNRSTRLWRKTRTKYKESKPPYKTCYGADPNRNWDSHWETGINASDNCTTDYYRGPFAGSEKCVANVQTFLRQLKNLTSYWNIHAFSQLVLTTWSWTSALSKDYPEIKRVGDVFAEAVSKRYGTHYKVGPPSRFLYPASGCSIDFAHDELKVVYSYGLELRDKGHYGFVLPANQIQPSGEET 750
            D  ++ +L K D +L+PV N DGY YT T    RLWRKTR     S+ P  +C GADPNRNW++ +  G  ASDN  ++ Y GP A SE  V +V  F+++  N   + ++H++SQL++  + ++   + D  E+ +V  + A+A++   GT Y+VGP    +YPASG SID+A+D   + +++  ELRD G YGF+LPANQI P+ EET
Sbjct:  205 DPAITSILEKMDIFLLPVANPDGYVYTQTQ--NRLWRKTR-----SRNPGSSCIGADPNRNWNASF-AGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHSYSQLLMYPYGYSVKKAPDAEELDKVARLAAKALASVSGTEYQVGPTCTTVYPASGSSIDWAYDN-GIKFAFTFELRDTGTYGFLLPANQIIPTAEET 405
The following BLAST results are available for this feature:
BLAST of TCONS_00008187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBPA43.797e-4942.86Carboxypeptidase A4 OS=Homo sapiens GN=CPA4 PE=1 S... [more]
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