TCONS_00008126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008126
Unique NameTCONS_00008126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length907

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008126 ID=TCONS_00008126|Name=TCONS_00008126|organism=Clytia hemisphaerica|type=transcript|length=907bp
GTGGCGGTATTTCGATCAAACCTAGTAGTGGGATGGGTTTGATGCGGGGA
GACATGGGTGGAGCCGCTTGCGTTTTGGCTACGCTGCACATCATTGCAAA
ATTGAAGCTACCTGTCAATTTATCAGTGCTGGTTCCCATGGCAGAAAATA
TGCCGTCTGATCGAGCAGCCAAACCAGGAGATGTTTTTACTGCACTCAAT
GGAAAGACCGTCGAGGTCGATAACACAGATGCTGAAGGACGAATGATCCT
GGCGGACGCTTTATGCTACGCGGACGAATTTCAACCGTCTACAATAATCG
ATGTCGCTACACTTACAGGTGCAATCGACGTGGCGTTAGGTGGGGCAGCC
GCTGGAGCTTACACAACGTGTAACAACTTATGGCAGAACATGGAACAGGC
CAGTTACACGACAGGCGATCGTTTTTGGAGAATGCCTTTGTACAAACATT
ACACCAAACAAATGAAATGTAGCTTGACTGCTGATCTACGAAACACGCAG
AAAAAAGCACGTTCCGCTGGGTCCGCAACTGCTGCCGCTTTTTTAAAGGA
ATTTGTAACGATTAAGAGCTGGGCTCATCTAGATATTGCTGGCGTGATGG
ATAATTCCGGAGGGGAATTACCGTATCTCAACTCCGGAATGTCAGgTCGT
CCGACAAGAACTTTGGTTGAAACCGTCCGAAATATTTTTACGtagaaaaa
agaaacattatttttatttgacaaGTTTTTATAGTTTAGATCACACATAa
ctttagaatttatttttgtatttttgatggAAACATTTACCAATtacaaa
aaactcattttttcaatgcaacGATTTCATCCAAGCCATACGCCCCTCTT
TTATAATTGAGATAATTCTCAAGCtgcttcaaatttttttgtaaaacccA
TACTTAA
Run BLAST on NCBI

transcript from alignment at sc0000082:459118..467986+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008126 ID=TCONS_00008126|Name=TCONS_00008126|organism=Clytia hemisphaerica|type=transcript|length=8869bp|location=Sequence derived from alignment at sc0000082:459118..467986+ (Clytia hemisphaerica)
GTGGCGGTATTTCGATCAAACCTAGTAGTGGGATGGGTTTGATGCGGGGA
GACATGGGTGGAGCCGCTTGCGTTTTGGCTACGCTGCACATCATTGCAAA
ATTGAAGCTACCTGTCAATTTATCAGTGCTGGTTCCCATGGCAGAAAATA
TGCCGTCTGATCGAGCAGCCAAACCAGGAGATGTTTTTACTGCACTCAAT
GGAAAGACCGTCGAGGTTGGTTCTATTTTACTATCCGAGGACGCTGGTTA
GAAAGATATTCGTGTTATGAGCTTTTGTACCATATCTTGTACATATCCAT
TCTTTCAAAGATGTCAAATAAATGGGCCccttgtgttttttgtttgctgt
ttttttttactctcGCAGCAGAACCCCTTATAACATTGATAAATTTCTGA
AAACATTTTTATCTGTCAAAAAAATCcattattttgctccaaaatcTGAT
AATGACTGTTCGGATAATAATCCCCCTCGCCTTGTAATCAGCATCTCCCC
ATTCAGCAAATTTCAAACTCCCTTTGAACATTAATCGATCTCGCCCTGAC
AAACGACAAGTCGAAAATCTCCCACGAAACCGTAATTTTCCCTTATCACT
AAGTGATCATGATATGATTGGAGTTGTTCGGAAACGTAACCATCAAAGAT
ATGAACCCAAAACCATCAAATGCCGAAACTTTTCGCGGTACAATCCTGAT
GCTATGAACAACGAACTTCGCCAAGTCGATTGGAATCTTGTATATCAACA
GTCCGAACCAAATGCTGCTTGGAAATACTTCAAACAAATCGTGACTAACT
CCTTCAATCGCCATGCCCCTGAAATAACAAAACGCATCAAAGGTCGCCCA
TGTCCATGGCTCACCCAAGAAATCCGAGCACACCTGAACGATCGTGACAA
AGCTGATCGAAAAGCAAGGCGAACGAAAGACGAAGGTGATCGAAATATCT
ATCGTCGTAAAAAGAACCGATGCACCAATCTCATCAAACAGGCGAAAAAC
AATTACCATAAAGAAATCCTCACCGAAAACCtcaaaaatagtaaaaagtT
CTGGGGTcacatcaaaaaacttttaccaTCTTCAAACGTAAAATCAAAAC
CAACTGACGTTCTCAAAGACGGTGACGCAACCGCTACTAGCCCAAAAGAC
AAAGCCGATATGTTTTGTAATTATTACGCCAAAGTGGCACagaatctaaa
gaaaaaagcaATGCCACTAATAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TTTTGGATCTAGTGAGGCTTTGGTTTTCACTCTCGTTGCTACATTTAACT
ATATCCCTAATATTCTGTATCAATTTGTTTACAACACCACAACACTACGC
AATGATCTTTTACCAGAGATAGTAAAGATAGGCGTTTAGGATATTTTATC
TAATATTTATTTccgtcttattttttttttttttttaaacattttgaata
tGATAATTTCACTGTTTTTGGGTACTTTCTCCTTTTCAGAGTTTACACAT
TGCGTCACACTTTTCAGTATTAATATTCTCAGTATTACTGTATTAATAGA
CTTCACATGTATACTCTTAGTCTTGTTTACATTAATTTTAAGATAACCTT
TTGAAGTATCTATCGATCACAGCGTGGTTTTTCTGCGGGTATAACCTTTC
ATATTTAGTTNGATGTCAAATAAATGGGCCccttgtgttttttgtttgct
gtttttttttactctcGCAGCAGAACCCCTTATAACATTGATAAATTTCT
GAAAACACTTTTATCTGTCAAAAAAATCcattattttgctccaaaatcTG
ATAATGACTGTTCCGATAATAATCCCCCTCGCCTTGTAATCAGCATCTCC
CCATTCAGCAAATTTCAAACTCCCTTTCCGCTGTTTCTCAGGAACTTTGG
agtaataatcaaataaaaaatggcaaaaaaagagTCCATAAAAATTGTGT
CATTGTGTTTAGGTCGATAACACAGATGCTGAAGGACGAATGATCCTGGC
GGACGCTTTATGCTACGCGGACGAATTTCAACCGTCTACAATAATCGATG
TCGCTACACTTACAGGTAAGGGGAGGTAAAATTATTTGACCCTTGGGATC
TTCGCAACCATCACTTAACCCAACTTAGATATTCTTGATAAGATTGGTCT
CTAAAGCGTTTTCATTTTTGCTGTCCTTTTTGCTGTCCTTTTTTGCTTCA
TTTACAGTTTGTACAACTGAAAAACTTGATATTACTGCGTTGGATAAAAC
TGCCACCTTTCATCTTCAGGTGCAATCGACGTGGCGTTAGGTGGGGCAGC
CGCTGGAGCTTACACAACGTGTAACAACTTATGGCAGAACATGGAACAGG
TAACATCCGATTCCTGAAATTGATTTATATAAAAActtcctttttttgtt
tttcgaagCTTTTCTTCGAAACAGGTTTGAGTAGGTTTTCATCAAAATAC
TTGGCTTTCTTTCCAGGCCAGTTACACGACAGGCGATCGTTTTTGGAGAA
TGCCTTTGTACAAACATTACACCAAACAAATGAAATGTAGCTTGACTGCT
GATCTACGAAACACGCAGAAAAAAGCACGGTACGATACCTGAGGGATTTT
TTTCTCAGACTTCTTCTTTGGGAAGCTGTTTTTTACTTAACCAAAAGTCA
ATAATTAAGAAGCTTCGTGAATGAGATTTGTTCAAGTATTGATTGCTTAA
CAGTTCTTTAAGACATAGCTTTCTTTATTTATACCACTCAATTtaattgg
acctaccccggtggggtggaggtcctataaattcacctctgtccgttcgt
ccgtccgtctgttcgttaccaacttttctcgagattggctcattagtttt
ttctgattttttgcacaaagatgcataactataaaccctcgaatgtgacg
gagcccgattttcggggaaaaaattttttgggcaaatttgggccaaaaaa
cagctaaaaaacgggttttttgaactttgtaaaaaattggatcattaatt
ttttctgattttttgcatgaaagtaccatcataggtaaaagatggcttaa
gcagatttttgccaaaaaattttgttggctcaaaaaacgcatgtttatct
ataagaatcactattactaagcatacatcaatgttcttagtcaaattact
caatttttttatgacatagatgttttttttgctcgcgagggcttactttt
aaagaatatgtgtgtttagacatgaaattttggttgcttggcgtgttttt
atagaaaaactggccaaattcgatatttttttataagcacNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNccttatcaattacttaggtattagcttttc
tcgagattggctctttcattctttatgattttttgcacaaagatgcataa
ctacaaaccctcaaatgtgacagagctcgatttacgaaaaaaaacatttt
tgggcaaatttgggccaaaaaacggccaaaaaacgggttttttggacttt
gtgaaaaattggatcattaattttttctgattttttacatgaaagtaggg
taccatcataggtaaaagATGGCTCAAGCAGATTTTTGCAAAAAAAATTA
GTTGGCTCAATaaacgcatatttatctataaaaatcactattaataagca
tacatcaatgttcttagtcaaattactgaattttttttgtgagatagata
ttttttttactcgtgagggcttacttttaaagaatatgtgtgtttggaca
taaaattttggttgcttggcgtttttttatagaaaaactggccaaattcg
atatttttttataagcacattatcaattacttaggtattagctcttttcg
agattggctctttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TTcgttctttatgattttttgcacaaagatgcataactataaaccctcaa
atgtgacggagctcgatttttggaagaaaaaaaaattgggtaagtttcag
ctaaaaaacggctaaaaaaaggttttttggatttgtgaaatattgaatca
ttgtttttttctgattttttgcatgaaagtaggtaaaagatggctcaagc
agatttttgtaaaaaaataatttttcagctcaaaaaacgcatctttatct
ataagaatcagtattaataagcatacatcaatgttcttagccaaattact
gaattttttgatgagatatgttttttttgctcacgaagtcttgaatataa
aagaatattttaagagcatgaaattttggtttctaaatgttttttttata
agaaataaacgactaattttaatatatcgtgactatttgtgttctgaatg
attgtttaatggtcacgctcacgtagttTTCagttatatatgtgttaaat
gcataaccaggtaggtccataaaagtatcacttgttattttattttttcc
ataGTTCCGCTGGGTCCGCAACTGCTGCCGCTTTTTTAAAGGTAAGAGTA
GTAATTCGAATCAAAAACTTCCATAAAATGGAAAGTTTATATTTACACTG
TTAAAGACTTCTttaagcgtacaaactttcgcgggcagattcttttgtga
ttttcgcgaattttagcccttttcgcgaaagtaaatgtctttgaaaattc
ttgaaagaGCCATTCGCATCCATtcagtttatgctcgcgaaaaaaatTCC
TGAcaagataagaaaaaaatcagtaatGCTTCTaaattaaagtaaaatta
agaataattctatttatactgagacgattaattagtctgagacgagcaat
ttagaaaTTGAGAattatggaggagtgtactttcGATTCATatttcaata
aataggatctcctccacagatcacattttacaaactattcgtctcagacg
atttttccgtctcGGTATAAATAGAACTATTTATGGCACCTTTCTGCCCG
TTAAAGCCTCACGAGTCAAAAAACAAAAGCTTCAATCCgattcaagaagt
atttgtccttCTAAGCCATTTCTTCGTGTGAAAATTGTTTGCGATTTGTT
TATGTTGTTCGTGAAAGTTTTTTagggaaaaaatgtttttcgataCTCCC
CTGTAGATTCAAAGCTTCCTAATCATATTTGATCCATATTTATTTGGATT
GATAAcgtgtctaattttccgtcccTCAGGAATTTGTGACGATAAAAAGT
TGGGCCCACCTCGACATGTCGAACGTCAAAGCGAACTCGAGTGGCGAATT
ATCTTATCTCGGTCCAGGCTTTTCAGGTCAGTCTAACCTCATGTTTTTCT
CTCATATTTTTGTAGGAATTTGTAACGATTAAGAGCTGGGCTCATCTAGA
TATTGCTGGCGTGATGGATAATTCCGGAGGGGAATTACCGTATCTCAACT
CCGGAATGTCAGGTTTGTCTGCTTTCTTTTCCTGTTTTTCAAAATGCATG
GACACGTAAATTCTCTTTCCGCCTTCGTCAGCTCtgaaaagctcaatttt
tggacctacctccgggtaccccggtggaggtcctttaaattaacccatgt
tcgtccgtccgtccgtccgttcgtctgttaccagcttttctcgggattgg
cttattacttttttctgtttttttggcacaatgatgcaaaatgatgattc
ctaaaaagtgacgggcaaatttgggctacaaactgcctaaaaatagggtt
ttttggactttgtgcaaaatcctgtcattacttttttcttattttttgta
caaagatggagggcaaaattctctaaagaatgactgaagtggtttttccc
ggaaaattcttattcgccttaaaagacggattttcgtattttggggaaat
tccctttaaccaaataaggaaatatagcttttctcaatgttgactcataa
tgtttttctgattttttgcacaatgatgcaaaatggcaatgcccaaaatg
tgacggagccagatttttaaggaaaatttttttgggcaaatttggggaaa
aaactgcttaaaaatagggttttttgggcctgaatggtttaagtgatttt
cgtatttggggaaattcctttttaccattttacattattcaacacacNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNaggtaggtccattcagcatgttgcttgtttggtttgattttttgga
aCTCTTTTGTTAGGGGGAGGCATTTGAGATCTGatattgattttcttatt
ttcttaggTCGTCCGACAAGAACTTTGGTTGAAACCGTCCGAAATATTTT
TACGtagaaaaaagaaacattatttttatttgacaaGTTTTTATAGTTTA
GATCACACATAactttagaatttatttttgtatttttgatggAAACATTT
ACCAATtacaaaaaactcattttttcaatgcaacGATTTCATCCAAGCCA
TACGCCCCTCTTTTATAATTGAGATAATTCTCAAGCtgcttcaaattttt
ttgtaaaacccATACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004580XLOC_004580Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008126-exon-sc0000082-1491911889:459118..459332TCONS_00008126-exon-sc0000082-1491911889:459118..459332Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1510915933:459118..459332TCONS_00008126-exon-sc0000082-1510915933:459118..459332Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1575043694:459118..459332TCONS_00008126-exon-sc0000082-1575043694:459118..459332Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1491911889:463130..463232TCONS_00008126-exon-sc0000082-1491911889:463130..463232Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1510915933:463130..463232TCONS_00008126-exon-sc0000082-1510915933:463130..463232Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1575043694:463130..463232TCONS_00008126-exon-sc0000082-1575043694:463130..463232Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1491911889:463437..463516TCONS_00008126-exon-sc0000082-1491911889:463437..463516Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1510915933:463437..463516TCONS_00008126-exon-sc0000082-1510915933:463437..463516Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1575043694:463437..463516TCONS_00008126-exon-sc0000082-1575043694:463437..463516Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1491911889:463634..463746TCONS_00008126-exon-sc0000082-1491911889:463634..463746Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1510915933:463634..463746TCONS_00008126-exon-sc0000082-1510915933:463634..463746Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1575043694:463634..463746TCONS_00008126-exon-sc0000082-1575043694:463634..463746Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1491911889:465772..465808TCONS_00008126-exon-sc0000082-1491911889:465772..465808Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1510915933:465772..465808TCONS_00008126-exon-sc0000082-1510915933:465772..465808Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1575043694:465772..465808TCONS_00008126-exon-sc0000082-1575043694:465772..465808Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1491911889:466633..466729TCONS_00008126-exon-sc0000082-1491911889:466633..466729Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1510915933:466633..466729TCONS_00008126-exon-sc0000082-1510915933:466633..466729Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1575043694:466633..466729TCONS_00008126-exon-sc0000082-1575043694:466633..466729Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1491911889:467725..467986TCONS_00008126-exon-sc0000082-1491911889:467725..467986Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1510915933:467725..467986TCONS_00008126-exon-sc0000082-1510915933:467725..467986Clytia hemisphaericaexon
TCONS_00008126-exon-sc0000082-1575043694:467725..467986TCONS_00008126-exon-sc0000082-1575043694:467725..467986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:459118..467986 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.6321	55.0448	16.9713	0.000101796	1.67533	23.5572	8.48777	24.9948	1.97766	1.17069	2.12753	22.226	25.5942	29.3347	2.21597	23.1213	31.1447	40.6862	7.78273	9.80985	21.6066	5.55398	34.1833	16.3293	3.91066	1.49638	27.7482	2.94432	34.0578	12.705
Blast
[Close]
BLAST of TCONS_00008126 vs. Swiss-Prot (Human)
Match: AMPL (Cytosol aminopeptidase OS=Homo sapiens GN=LAP3 PE=1 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 1.082e-72
Identity = 137/223 (61.43%), Postives = 164/223 (73.54%), Query Frame = 3 
Query:    3 GGISIKPSSGMGLMRGDMGGAACVLATLHIIAKLKLPVNLSVLVPMAENMPSDRAAKPGDVFTALNGKTVEVDNTDAEGRMILADALCYADEFQPSTIIDVATLTXXXXXXXXXXXXXXYTTCNNLWQNMEQASYTTGDRFWRMPLYKHYTKQMKCSLTADLRNTQKKXXXXXXXXXXXFLKEFVTIKSWAHLDIAGVMDNSGGELPYLNSGMSGRPTRTLVE 671
            GGISIK S+ M LMR DMGGAA + + +   AKL LP+N+  L P+ ENMPS +A KPGDV  A NGKT++VDNTDAEGR+ILADALCYA  F P  I++ ATLTGA+DVALG  A G +T  + LW  + +AS  TGDR WRMPL++HYT+Q+     AD+ N   K RSAG+ TAAAFLKEFVT   WAHLDIAGVM N   E+PYL  GM+GRPTRTL+E
Sbjct:  289 GGISIKASANMDLMRADMGGAATICSAIVSAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHYTRQVVDCQLADVNNI-GKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNK-DEVPYLRKGMTGRPTRTLIE 509
The following BLAST results are available for this feature:
BLAST of TCONS_00008126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AMPL1.082e-7261.43Cytosol aminopeptidase OS=Homo sapiens GN=LAP3 PE=... [more]
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