TCONS_00000819 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000819
Unique Name	TCONS_00000819
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1744

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000005:641772..643515-

transcript sequence

>TCONS_00000819 ID=TCONS_00000819|Name=TCONS_00000819|organism=Clytia hemisphaerica|type=transcript|length=1744bp
CTAGTTGCTAAACTGTGTGTAACAAAAAAGTTTCCTGGGAGAAAGTCTCT
TGTAGTGTGGAAAAGAGCGTTTCAGCAAAATCCTTTACAACACTCCAGAG
TGTTTGGCTGCAGAGAATAGATCTGGTATCTTGTGTCAGGTGAACTTTAA
GGAAATATGAGTTTATCCGTAGTATTTTTCGCCTTGCTGTTGTATACATC
ATTGGGATTCATCTGCGCATGGTTCGTCTTAAGCAACTATAACCAATTTG
TTGTAGCCGTGAAGTCTCAAGCAATATCTCTATCAGTTAACAACACAGTG
ATGTCACAGAAAGTGACTTTCGATCAAACAGAGTATGAAATTTATGCAGA
TAATACATATGAGGGGATTCTATGGAATAAAATAGGAATTATCTTGTTGA
ATGTTTGGACTTCTATCGGACACTTGGGACTACTCGCCATACTCCAATTA
CGGGACAACACATTTTTGGACAAACCCGTTATTTTTCTGTTACAGCAAAG
TCTTCTAATGCAATTGGCATCTTTCATGACTTTGAATTGGAtctataaaa
aattatttttacttccTTCTGGATACGATAGATGGTGGTGGTTCTCATAT
GATCTTTTCAGCGGCTGGTGGGCTGCACGTCTTTTTGTAGCTTTGGTTAT
GTCGCAATTACTTTTACTGTTACTGTTTGTCTCGTTCGTATTTCGTCTAC
ATGCTAAAGCATATCGCGAAGCGAATAATGCATTCAACATATTCATATCT
TTTGGATGTAAAATAATCATATTCATCATAGTTAACGGCATTGTTTCTGT
TTATTACCCAGAGAGTTTTATTGTTACCGATTTCCTGTCCGCCATTTTGA
ACCCGGCAATTATGTCAGGTATTCTCATCTCATTGGCTTTTGTTATGTTG
ACTTTACGCGTAACAAAATGGAGGAATCTTAACGTTAAATCATTAAGCAA
GAAATCTGTTTTGATACATTGCTTATTATCCTCATTTTACGGCGTTGGGA
CCATCTATTACGTGTCGAACTACATCTGTATCATTGATTACCAATCTTAC
CAATCTTATTGTCATTATAACCAAGAGGAATGCGACCAGATAGCCGATCG
AATAAATTCATCTTTCTTACAGAATGGTAGATACTGGCTCCCGTTTATAT
CGATCACTCCTTTATTGAATGTCCTTGCTGTcattttctttgataaaaat
CTTCTCGGGAAGTTGGCTCGTGTTTTCTTTATAATCGATAAGCGCATATG
GCCATTGGTAAACAAATACCTTTGCGCATGTAATCAAAATGACCATCACC
GAGATAACGAGGCCCAAAGACCTCTGTTGACGAGTAATGATGACAATCAT
CAGATAGAGGGCCCAAGAGTTGATTCAACCGATGGACCATCACGTCAACA
TCGAAATAATTCACGCGTACCCGAAAGCAATAACAAGCTTTTGCCAATTC
CTTATCATGATAGGGGACTTAATCAGAATTTTGATGGTATAGTAAAATCA
GAGCTTAATTGTAGTGACATTACAAAGACAGATGATAAACGTCTTACTTT
GTTAGCGCTTGCACAAGAATTGGAAGTGAGTGTACATTCATGAGTAAAct
tattcaattattttttatatcatatttcatatgatattttcgatttaaac
tttttaagaatatttttacaaagttttttgaTTGCTGCAAATAGACAAAT
TAATGAATTTTCAGGAAAATCCGGCTTCATAGTTGACTTACCAA

Run BLAST on NCBI

transcript from alignment at sc0000005:641772..643515-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000819 ID=TCONS_00000819|Name=TCONS_00000819|organism=Clytia hemisphaerica|type=transcript|length=1744bp|location=Sequence derived from alignment at sc0000005:641772..643515- (Clytia hemisphaerica)
CTAGTTGCTAAACTGTGTGTAACAAAAAAGTTTCCTGGGAGAAAGTCTCT
TGTAGTGTGGAAAAGAGCGTTTCAGCAAAATCCTTTACAACACTCCAGAG
TGTTTGGCTGCAGAGAATAGATCTGGTATCTTGTGTCAGGTGAACTTTAA
GGAAATATGAGTTTATCCGTAGTATTTTTCGCCTTGCTGTTGTATACATC
ATTGGGATTCATCTGCGCATGGTTCGTCTTAAGCAACTATAACCAATTTG
TTGTAGCCGTGAAGTCTCAAGCAATATCTCTATCAGTTAACAACACAGTG
ATGTCACAGAAAGTGACTTTCGATCAAACAGAGTATGAAATTTATGCAGA
TAATACATATGAGGGGATTCTATGGAATAAAATAGGAATTATCTTGTTGA
ATGTTTGGACTTCTATCGGACACTTGGGACTACTCGCCATACTCCAATTA
CGGGACAACACATTTTTGGACAAACCCGTTATTTTTCTGTTACAGCAAAG
TCTTCTAATGCAATTGGCATCTTTCATGACTTTGAATTGGATCTATAAAA
AATTATTTTTACTTCCTTCTGGATACGATAGATGGTGGTGGTTCTCATAT
GATCTTTTCAGCGGCTGGTGGGCTGCACGTCTTTTTGTAGCTTTGGTTAT
GTCGCAATTACTTTTACTGTTACTGTTTGTCTCGTTCGTATTTCGTCTAC
ATGCTAAAGCATATCGCGAAGCGAATAATGCATTCAACATATTCATATCT
TTTGGATGTAAAATAATCATATTCATCATAGTTAACGGCATTGTTTCTGT
TTATTACCCAGAGAGTTTTATTGTTACCGATTTCCTGTCCGCCATTTTGA
ACCCGGCAATTATGTCAGGTATTCTCATCTCATTGGCTTTTGTTATGTTG
ACTTTACGCGTAACAAAATGGAGGAATCTTAACGTTAAATCATTAAGCAA
GAAATCTGTTTTGATACATTGCTTATTATCCTCATTTTACGGCGTTGGGA
CCATCTATTACGTGTCGAACTACATCTGTATCATTGATTACCAATCTTAC
CAATCTTATTGTCATTATAACCAAGAGGAATGCGACCAGATAGCCGATCG
AATAAATTCATCTTTCTTACAGAATGGTAGATACTGGCTCCCGTTTATAT
CGATCACTCCTTTATTGAATGTCCTTGCTGTCATTTTCTTTGATAAAAAT
CTTCTCGGGAAGTTGGCTCGTGTTTTCTTTATAATCGATAAGCGCATATG
GCCATTGGTAAACAAATACCTTTGCGCATGTAATCAAAATGACCATCACC
GAGATAACGAGGCCCAAAGACCTCTGTTGACGAGTAATGATGACAATCAT
CAGATAGAGGGCCCAAGAGTTGATTCAACCGATGGACCATCACGTCAACA
TCGAAATAATTCACGCGTACCCGAAAGCAATAACAAGCTTTTGCCAATTC
CTTATCATGATAGGGGACTTAATCAGAATTTTGATGGTATAGTAAAATCA
GAGCTTAATTGTAGTGACATTACAAAGACAGATGATAAACGTCTTACTTT
GTTAGCGCTTGCACAAGAATTGGAAGTGAGTGTACATTCATGAGTAAACT
TATTCAATTATTTTTTATATCATATTTCATATGATATTTTCGATTTAAAC
TTTTTAAGAATATTTTTACAAAGTTTTTTGATTGCTGCAAATAGACAAAT
TAATGAATTTTCAGGAAAATCCGGCTTCATAGTTGACTTACCAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000491	XLOC_000491	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000819-exon-sc0000005-1575043694:641772..643515	TCONS_00000819-exon-sc0000005-1575043694:641772..643515	Clytia hemisphaerica	exon
TCONS_00000819-exon-sc0000005-1510915933:641772..643515	TCONS_00000819-exon-sc0000005-1510915933:641772..643515	Clytia hemisphaerica	exon
TCONS_00000819-exon-sc0000005-1491911889:641772..643515	TCONS_00000819-exon-sc0000005-1491911889:641772..643515	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000005	supercontig	sc0000005:641772..643515 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.406345	0.285312	0.665844	0.627244	0.720475	0.446392	2.23888	1.30978	3.24482	4.09734	1.02554	1.33754	1.84788	0.878944	0.921006	0.447161	1.17776	1.56495	0.446668	0.227139	0	0.13529	0.458408	0.268059

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00000819 vs. Swiss-Prot (Human)

BLAST of TCONS_00000819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00000819 (transcript) - C. hemisphaerica