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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007864 ID=TCONS_00007864|Name=TCONS_00007864|organism=Clytia hemisphaerica|type=transcript|length=1616bp
tATAATTTTCTGAAAACGTGCAAAATTGAAACCATCATTAAAAtagccgc
catctttgtttatacTGAAGATGTGTACGAACTGTTCAAATTGTTTGACC
GAGGTTCAGCATGTAAAGAAAGATAGAAAACAGTTCAACTAAAGAGTTAG
ATTGAAGAATCGAGAAAGAATACAAACCCGGCAAAGGTGAAAATATTGAG
TTCAAAGGGTTTCCTACTCGTGGTCAAAATGAGACATAAAGCATCGAGAT
TTCGGCTCATATGTTATCTGTTGACTTTGAACTGCATTCTGGTACCTCTC
GTCATTCGATATTGGTCATGTTGGCACTTCATCGAGAATGGTGCGCTGTC
TCTGCAACAAAAAGAATTTATGTTACAGAAGATCCCAGTGGGTGGGAAAC
ATGTTGAAAGATTACATCATCGGAAAGCATGCAAACGTAAGAAGAACATC
GTGTTTCTGAAGACACACAAAACAGGGAGTTCAACCATCaccaatatcct
caacagatATGGTGAAGCAAGGAATCTCAACTTCGTCTTACCTAGCATCG
GATCCAATCGATTGGACTGGCCTTGGTTTTTTAAGAACACTTCATTTTAT
CCTCTAAACGGAACAGAACCAAACATATTATGTAATCATGCTAGATTCAA
TAAACAACCTATGACTGATTTGATGCCCAATGATACTGTTTACGTCACTA
TATTACGTAATCCCATCAGCCAGTTCGAATCTAGCTTCTCGTACATGACT
TTTGATAAGATTTTGGGAATGAAGAAAAGTGAAGACACTTTAACAGAGTT
TTTTAAAGACCCTGAAAAAGTTTTAGTCAATTATGTTCTGACTCAAGATT
TGAGGATCAATAGTGATCGATTGAAATTGATCCAAAATGGAATGTTTTAT
GATTTAGGGTTAGAAtcgaaagattttaaaaacaataaagaGATTTATAA
GAAGCTGGAGGAGTTGGATCATCAATTTCATTTGGTGATGATGATGGAAT
ATTTTGATGAATCTATTGTTCTCTTAAAACGTTTATTGTGTTGGGAATTA
GATGACTTTGTTTACTTTCGATTAAAGAATCGAGCGGAATCGTGGCGGAG
ACATATCTCAAAACCTCTACAAAAGAAAATCACTAAATGGAGTCAGGCTG
ATGTTATTTTATATAATCATTTCAATAAAACATTTTGGAACATTCTGAAA
AATATAGATCAAGATTTCTGGCATGAAGTCGAAATGTTGAAAGCGAAAAA
TACTTTTATGAGAAATATGTGTATTCGATATGATAAAAGGGAAAATTCAT
TCGATTCACCCGATTCAGCCGAAACAAAAACNAATATGATAAGAGGGAAA
ATTCATACGATACACCCGATTCAGCCGAAACAAAAACGATTCACATACGA
CATGATATACCTTTTTCTGTACGCAAGATGTGTAAGAGAATGACTTGGGA
TGAGATTAAGTACTTAAAACACTTACGAGAGCTCCACGTCGAGAAAGCAT
CAGGTAAACAAATAAAGAGAGAGGGAGTGACGTTCACTAAAACTCTTTAT
GAATCTTTTTCATGGATGGCACAAAAAGTTTATGATGGATATCATGTAGT
ACAACATATACGCGAC Run BLAST on NCBI protein sequence of TCONS_00007864-protein >TCONS_00007864-protein ID=TCONS_00007864-protein|Name=TCONS_00007864-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MRHKASRFRLICYLLTLNCILVPLVIRYWSCWHFIENGALSLQQKEFMLQ
KIPVGGKHVERLHHRKACKRKKNIVFLKTHKTGSSTITNILNRYGEARNL
NFVLPSIGSNRLDWPWFFKNTSFYPLNGTEPNILCNHARFNKQPMTDLMP
NDTVYVTILRNPISQFESSFSYMTFDKILGMKKSEDTLTEFFKDPEKVLV
NYVLTQDLRINSDRLKLIQNGMFYDLGLESKDFKNNKEIYKKLEELDHQF
HLVMMMEYFDESIVLLKRLLCWELDDFVYFRLKNRAESWRRHISKPLQKK
ITKWSQADVILYNHFNKTFWNILKNIDQDFWHEVEMLKAKNTFMRNMCIR
YDKRENSFDSPDSAETKXNMIRGKIHTIHPIQPKQKRFTYDMIYLFLYAR
CVRE Run BLAST on NCBI transcript from alignment at sc0000080:648466..650527+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007864 ID=TCONS_00007864|Name=TCONS_00007864|organism=Clytia hemisphaerica|type=transcript|length=2062bp|location=Sequence derived from alignment at sc0000080:648466..650527+ (Clytia hemisphaerica)
tATAATTTTCTGAAAACGTGCAAAATTGAAACCATCATTAAAAtagccgc
catctttgtttatacTGAAGATGTGTACGAACTGTTCAAATTGTTTGACC
GAGGTTCAGCATGTAAAGAAAGATAGAAAACAGTTCAACTAAAGAGTTAG
ATTGAAGAATCGAGAAAGAATACAAACCCGGCAAAGGTGAAAATATTGAG
TTCAAAGGGTTTCCTACTCGTGGTCAAAATGAGACATAAAGCATCGAGAT
TTCGGCTCATATGTTATCTGTTGACTTTGAACTGCATTCTGGTACCTCTC
GTCATTCGATATTGGTCATGTTGGCACTTCATCGAGAATGGTGCGCTGTC
TCTGCAACAAAAAGAATTTATGTTACAGAAGATCCCAGTGGGTGGGAAAC
ATGTTGAAAGATTACATCATCGGAAGTAAGTAAactaaaaaatttctttg
agtatAAGAGTAAAAATTTCTCGTTCTCCTTCCCAAAGCCACTTATTAGT
TTAGTAGGGTTGATCGAGATAAGGAATTGAACAATGAAAACTGTGAAACA
TAAGGTAGCCGTGAAGTAATTACTCCAAAACCCCTTGCTAAGTTTTTAGt
tataaagtgaaagtatatcaAATGCCAATGGAAAACTTTTGCTTGTAATT
AGTTAGgggttttgaattttattgtttaaaaatattcgGACATCCTCACT
GAATCTTTTTTAGAactatttttaaacaataaaattcaaaCCCCTAACCA
TAACAAGCAAGATGAAACTGCAGGATATTTTTCACCAGAGACAAACTCCA
AGGCAAATTTTCCCAGTTGGGAGCTAGAAAAAGTAATCTACAACACAAAA
ATTTGTCTTTTCTTTCTACAGAGCATGCAAACGTAAGAAGAACATCGTGT
TTCTGAAGACACACAAAACAGGGAGTTCAACCATCaccaatatcctcaac
agatATGGTGAAGCAAGGAATCTCAACTTCGTCTTACCTAGCATCGGATC
CAATCGATTGGACTGGCCTTGGTTTTTTAAGAACACTTCATTTTATCCTC
TAAACGGAACAGAACCAAACATATTATGTAATCATGCTAGATTCAATAAA
CAACCTATGACTGATTTGATGCCCAATGATACTGTTTACGTCACTATATT
ACGTAATCCCATCAGCCAGTTCGAATCTAGCTTCTCGTACATGACTTTTG
ATAAGATTTTGGGAATGAAGAAAAGTGAAGACACTTTAACAGAGTTTTTT
AAAGACCCTGAAAAAGTTTTAGTCAATTATGTTCTGACTCAAGATTTGAG
GATCAATAGTGATCGATTGAAATTGATCCAAAATGGAATGTTTTATGATT
TAGGGTTAGAAtcgaaagattttaaaaacaataaagaGATTTATAAGAAG
CTGGAGGAGTTGGATCATCAATTTCATTTGGTGATGATGATGGAATATTT
TGATGAATCTATTGTTCTCTTAAAACGTTTATTGTGTTGGGAATTAGATG
ACTTTGTTTACTTTCGATTAAAGAATCGAGCGGAATCGTGGCGGAGACAT
ATCTCAAAACCTCTACAAAAGAAAATCACTAAATGGAGTCAGGCTGATGT
TATTTTATATAATCATTTCAATAAAACATTTTGGAACATTCTGAAAAATA
TAGATCAAGATTTCTGGCATGAAGTCGAAATGTTGAAAGCGAAAAATACT
TTTATGAGAAATATGTGTATTCGATATGATAAAAGGGAAAATTCATTCGA
TTCACCCGATTCAGCCGAAACAAAAACNAATATGATAAGAGGGAAAATTC
ATACGATACACCCGATTCAGCCGAAACAAAAACGATTCACATACGACATG
ATATACCTTTTTCTGTACGCAAGATGTGTAAGAGAATGACTTGGGATGAG
ATTAAGTACTTAAAACACTTACGAGAGCTCCACGTCGAGAAAGCATCAGG
TAAACAAATAAAGAGAGAGGGAGTGACGTTCACTAAAACTCTTTATGAAT
CTTTTTCATGGATGGCACAAAAAGTTTATGATGGATATCATGTAGTACAA
CATATACGCGAC Coding sequence (CDS) from alignment at sc0000080:648466..650527+ >TCONS_00007864 ID=TCONS_00007864|Name=TCONS_00007864|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at sc0000080:648466..650527+ (Clytia hemisphaerica)
ATGAGACATAAAGCATCGAGATTTCGGCTCATATGTTATCTGTTGACTTT
GAACTGCATTCTGGTACCTCTCGTCATTCGATATTGGTCATGTTGGCACT
TCATCGAGAATGGTGCGCTGTCTCTGCAACAAAAAGAATTTATGTTACAG
AAGATCCCAGTGGGTGGGAAACATGTTGAAAGATTACATCATCGGAAAGC
ATGCAAACGTAAGAAGAACATCGTGTTTCTGAAGACACACAAAACAGGGA
GTTCAACCATCaccaatatcctcaacagatATGGTGAAGCAAGGAATCTC
AACTTCGTCTTACCTAGCATCGGATCCAATCGATTGGACTGGCCTTGGTT
TTTTAAGAACACTTCATTTTATCCTCTAAACGGAACAGAACCAAACATAT
TATGTAATCATGCTAGATTCAATAAACAACCTATGACTGATTTGATGCCC
AATGATACTGTTTACGTCACTATATTACGTAATCCCATCAGCCAGTTCGA
ATCTAGCTTCTCGTACATGACTTTTGATAAGATTTTGGGAATGAAGAAAA
GTGAAGACACTTTAACAGAGTTTTTTAAAGACCCTGAAAAAGTTTTAGTC
AATTATGTTCTGACTCAAGATTTGAGGATCAATAGTGATCGATTGAAATT
GATCCAAAATGGAATGTTTTATGATTTAGGGTTAGAAtcgaaagatttta
aaaacaataaagaGATTTATAAGAAGCTGGAGGAGTTGGATCATCAATTT
CATTTGGTGATGATGATGGAATATTTTGATGAATCTATTGTTCTCTTAAA
ACGTTTATTGTGTTGGGAATTAGATGACTTTGTTTACTTTCGATTAAAGA
ATCGAGCGGAATCGTGGCGGAGACATATCTCAAAACCTCTACAAAAGAAA
ATCACTAAATGGAGTCAGGCTGATGTTATTTTATATAATCATTTCAATAA
AACATTTTGGAACATTCTGAAAAATATAGATCAAGATTTCTGGCATGAAG
TCGAAATGTTGAAAGCGAAAAATACTTTTATGAGAAATATGTGTATTCGA
TATGATAAAAGGGAAAATTCATTCGATTCACCCGATTCAGCCGAAACAAA
AACNAATATGATAAGAGGGAAAATTCATACGATACACCCGATTCAGCCGA
AACAAAAACGATTCACATACGACATGATATACCTTTTTCTGTACGCAAGA
TGTGTAAGAGAATGAATGAGACATAAAGCATCGAGATTTCGGCTCATATG
TTATCTGTTGACTTTGAACTGCATTCTGGTACCTCTCGTCATTCGATATT
GGTCATGTTGGCACTTCATCGAGAATGGTGCGCTGTCTCTGCAACAAAAA
GAATTTATGTTACAGAAGATCCCAGTGGGTGGGAAACATGTTGAAAGATT
ACATCATCGGAAAGCATGCAAACGTAAGAAGAACATCGTGTTTCTGAAGA
CACACAAAACAGGGAGTTCAACCATCaccaatatcctcaacagatATGGT
GAAGCAAGGAATCTCAACTTCGTCTTACCTAGCATCGGATCCAATCGATT
GGACTGGCCTTGGTTTTTTAAGAACACTTCATTTTATCCTCTAAACGGAA
CAGAACCAAACATATTATGTAATCATGCTAGATTCAATAAACAACCTATG
ACTGATTTGATGCCCAATGATACTGTTTACGTCACTATATTACGTAATCC
CATCAGCCAGTTCGAATCTAGCTTCTCGTACATGACTTTTGATAAGATTT
TGGGAATGAAGAAAAGTGAAGACACTTTAACAGAGTTTTTTAAAGACCCT
GAAAAAGTTTTAGTCAATTATGTTCTGACTCAAGATTTGAGGATCAATAG
TGATCGATTGAAATTGATCCAAAATGGAATGTTTTATGATTTAGGGTTAG
AAtcgaaagattttaaaaacaataaagaGATTTATAAGAAGCTGGAGGAG
TTGGATCATCAATTTCATTTGGTGATGATGATGGAATATTTTGATGAATC
TATTGTTCTCTTAAAACGTTTATTGTGTTGGGAATTAGATGACTTTGTTT
ACTTTCGATTAAAGAATCGAGCGGAATCGTGGCGGAGACATATCTCAAAA
CCTCTACAAAAGAAAATCACTAAATGGAGTCAGGCTGATGTTATTTTATA
TAATCATTTCAATAAAACATTTTGGAACATTCTGAAAAATATAGATCAAG
ATTTCTGGCATGAAGTCGAAATGTTGAAAGCGAAAAATACTTTTATGAGA
AATATGTGTATTCGATATGATAAAAGGGAAAATTCATTCGATTCACCCGA
TTCAGCCGAAACAAAAACNAATATGATAAGAGGGAAAATTCATACGATAC
ACCCGATTCAGCCGAAACAAAAACGATTCACATACGACATGATATACCTT
TTTCTGTACGCAAGATGTGTAAGAGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007864-exon-sc0000080-1491911889:648466..648890 | TCONS_00007864-exon-sc0000080-1491911889:648466..648890 | Clytia hemisphaerica | exon |
| TCONS_00007864-exon-sc0000080-1510915933:648466..648890 | TCONS_00007864-exon-sc0000080-1510915933:648466..648890 | Clytia hemisphaerica | exon |
| TCONS_00007864-exon-sc0000080-1575043694:648466..648890 | TCONS_00007864-exon-sc0000080-1575043694:648466..648890 | Clytia hemisphaerica | exon |
| TCONS_00007864-exon-sc0000080-1491911889:649337..650527 | TCONS_00007864-exon-sc0000080-1491911889:649337..650527 | Clytia hemisphaerica | exon |
| TCONS_00007864-exon-sc0000080-1510915933:649337..650527 | TCONS_00007864-exon-sc0000080-1510915933:649337..650527 | Clytia hemisphaerica | exon |
| TCONS_00007864-exon-sc0000080-1575043694:649337..650527 | TCONS_00007864-exon-sc0000080-1575043694:649337..650527 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:648466..650527 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009729 | Gal-3-0_sulfotransfrase |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009247 | glycolipid biosynthetic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005794 | Golgi apparatus |
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0001733 | galactosylceramide sulfotransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009247 |
glycolipid biosynthetic process |
| cellular_component |
GO:0005794 |
Golgi apparatus |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0001733 |
galactosylceramide sulfotransferase activity |
Blast
BLAST of TCONS_00007864 vs. Swiss-Prot (Human)
Match: G3ST1 (Galactosylceramide sulfotransferase OS=Homo sapiens GN=GAL3ST1 PE=1 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 4.956e-57 Identity = 112/287 (39.02%), Postives = 167/287 (58.19%), Query Frame = 1
Query: 430 CKRKKNIVFLKTHKTGSSTITNILNRYGEARNLNFVLPSIGSNRLDWPWFFKNT---SFYPLNGTEPNILCNHARFNKQPMTDLMPNDTVYVTILRNPISQFESSFSYMTFDKILGMKKSE-DTLTEFFKDPEKVLVNYVLTQDLRINSDRLKLIQNGMFYDLGLESKDFKNNKEIYKKLEELDHQFHLVMMMEYFDESIVLLKRLLCWELDDFVYFRLKNRAESWRRHISKPLQKKITKWSQADVILYNHFNKTFWNILKNIDQD-FWHEVEMLKAKNTFMRNMCI 1275
C+ ++NIVFLKTHKT SST+ NIL R+G+ L F P+ G N D+P FF + + P G NI+CNH RF+ + L+P + +++T+LR+P FESSF Y L K S D LTEF +DP++ N ++N +F+DLG ++ ++ ++ + + E++ +FHLV++ EYFDES+VLLK LLCWEL+D +YF+L R +S +S L + T W+ D LY HFN +FW ++ ++ EV L+ N MR +CI
Sbjct: 72 CQPRRNIVFLKTHKTASSTLLNILFRFGQKHRLKFAFPN-GRNDFDYPTFFARSLVQDYRP--GACFNIICNHMRFHYDEVRGLVPTNAIFITVLRDPARLFESSFHYFGPVVPLTWKLSAGDKLTEFLQDPDRYY---------DPNGFNAHYLRNLLFFDLGYDNSLDPSSPQVQEHILEVERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNARRDSPVPRLSGELYGRATAWNMLDSHLYRHFNASFWRKVEAFGRERMAREVAALRHANERMRTICI 346
The following BLAST results are available for this feature:
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