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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007570 ID=TCONS_00007570|Name=TCONS_00007570|organism=Clytia hemisphaerica|type=transcript|length=3699bp tttagaaaaaaatactttgactAGACATCAGTCATGAAGAAAAAGGGTCG AATAATTCCCCTCtttcttttcattgaaatattgTCCATAGTCAGCGCTT ATGAAGTGTTACCTGGGTTAGATGTTTTGAGTGCAGGATTCGATGCCGCT TCTTGGAGCAGCAAGTCTCGTATATTTGATTTGGCAAATCAAGAACAGTC ACAAAAAGTTTACGTTCAATCTATTGATAAGACGTACGTGGCGCCCGACT TCGTGACGGTGGTGACGCACGGCGCACAATCAAAACGCGTGGAAGAATCC TGTGTCGGAGTTTACACTCATTTTAGTGAGTACATTCATACGTATCAATC CTCAGTCGGTTTCGACGTTGGTATACACACTGGCAACTTCAGTCTGGGAA TCTCCGCTCATAAAGACGTTCACAAAATCTACGAGTCGATCACTAAAGAA GGACAGGCTATCGGATCATCTGAATCATGGTGGGGTGTTTTCGAAGCCAC CCTTCCTCCACCCTTCTTAATGGGCGAAAAAATGTCTCCCATGTTTCAAC AAACTATGGCGTATTTGAACAAAATGGGCACACCTCAGACAGAAGCGCAG CAAACTATTTACAACCAAGTGTTAGGGAGCTTTGGAACACACTACGTCAC ATCGGTAATAACCGGAGGGCGCGCCAAAATGACCAATTTTGTTAACAGCA GTTATCACAAGGAACATTCTGAAACAACTGTATCGACTCAAgtttccatt ggatttgaaTGGAAGAAATTTGCTTTATCATTGTCAGATAAAgcgaaaga ttttgaaaagaaacTGACTGAGGATTTCAGGAACAACTCCAACCAAGTCT TAACTTTCCAACCTGATGTCAAAGAAATACATCAATCAAAAGCACCTTGG TTAAAATGGGAACAGGTTGTGGCACAAGAACCTACTGTGGTCAACACATC AGCAAGTAGTCTGGCAAACCTGttctttcaaaatgttgaaGTAATGAATC ACANTGTGGTCAACACATCAGCAAGTAGTCTGGCAAACCTGttctttcaa aatgttgaaGTAATGAATCACATGCAACAGACCATCGATTATTACACACA GCACCAACACTTACCGAAACTGTCAGATATAAAGCCATTGAAATTGAACC CACTTCTTCCAATAGAATCAAACAAAATCGAGTTTAGACCAGATGAAGAT ACTCAGAAGAGCAGTCCTGCTCCAGGATTGAAGATTGTTGGGTGTGGTTT TGATGCAACTACACTGCTTTCCAAAACCTGCTTGTTTGAATCACAATCCC CAGATCTACCTTCGACCAAATGGCAGGATCCGTATTATCCTAATATAATA TACGATGTCCCTTTTGgttattttgcaaCAAATACACCAGAATCCCTCCT GGTTGATGCCACAGTGGTGATGCAATCGATTGATGATTATGTTGAAAAAT CGGTTTACTACGAATCACACCACCACAGTGGATTTTTAGGCTTTGGCTCG AAAACAGAGACTAAAACAACTAAGAAATATTATCAAAACTTCTATGCACA TAACTATAAACTCGTTTTATCCCTCCGACAAATCGCATGGTACACTTTGA GACTATCTGAGTTCCCCTTACCTAAGTTCAGTAGAACCTTTCAACAATCA CTGGATTACTTACCAAAAACCTTCAATGCTTCAGATGCACATGGGATGAC catctttaaaatgttctttgatGCTTTTGGCACAGATGTTGTCACATCAG CTGACATGGGAGgcatggtatgggctgaaaACTGGTTTGAATCGTGTCTA AGCAAGATATACTCGGATATTTGCATCACACACACTGTAAATCGTGGCTG GTGGTTCGTCCACCATCATGATATCACGAAAAAGTGTGATAAACGTATCA TCAATGATCTAAAGAAGTATTCAGAAGCTCATTACGAAATGCTGGGTGGA ACTTCtggtcaaatcaaacaaaaagatTGGGATGAATGGGTTTCCAGCGT TAAATATGATCCAAGACCGGTCAAATATAGCTTAGCTCCAATCCATTATT TGTTGGCCGATTCTCATCCGAAGAAGAAGTCTTTGGAGGCAGCTACGCTA CATTTCTTGAAAACAAGTCATGAGGAGCAACAGAAGTTGATTGTAGAGTT GAAAAAAGTTAGACCACCACCTGCTAGTATCTGTAAAAAGATTCATCCGC CCAAACTGAACGAGattCTTCAAGAAGACTACACCAAACCTTTATTAGAT GCAGACCCCAGCGATGTATTGTGTCCGTTTGTTGGTTACCATGGTGCTTA TTGTCCAAAAGCATTGTCCAAAAGTAATTTGAAATTCATCTCTGATAAAG TCAAAGGTCAAAGCTCACTTCCACGCGGCGTTGGTCTCACGATCGATGTT ACGACCGGTGAATTGAAACTTCCTGCACTGAACTACATTGATTCAAAGGA TGAAACATGGTCTGATCCACAGACTGGTGATATCTTTAAAATCCCAGTCG GGGTGTCATTGACTATCAATGGAACTGAATCCGAAAATAAACCGATAATC CGAGTTTTCAAATCGGAACAAGAATTGACTTCCGTTTGGGAATCTGGATA CAAATCAGGCACGTGGTTAGGTGGAGAATTCGGTCAAAGTAAAGGTGTCT TGGATTTGTACACTAAATTCTTTTCCAAGCAACAAGCTACTTCGATCAAT CAACACCCACAGAGTTTATACAAGTTATCCTTGGCAGGCGAATGGGAGAA AAATTTGAACGATTACGTGAAATATGCGTTGAAAGCTTTGCCAGAGAAGT ATGACGAGAATATTTACGATCGATTCATGGATACGTGGGGTACACACGTG GCTGAGAAAACATTGGTCGGAGGTATGTCTGAGCAGCAAGTAATTATGAA GGACTGTATGTGGCAGAACAAGTATTTAACAGGAGGAATAACCGATCCTC AGCTTCGACAATTCTTGGAAATGGAGTTGGGAATGAAGACACCGCCCAGT GGATATTACAAAGAACGAAGACAAATGCATATCGATCATAGAATTGGAGG GAATCCGGAAGTTAAGGATAAAGCAACTTGGATTAAGACTTTGGGCAAAA ATCCAGCACTGGTGAAAATATANATTCTGATTTTACCACAGGGAATCCGG AAGTTAAGGATAAAGCAACTTGGATTAAGACTTTGGGCAAAAATCCAGCA CTGGTGAAAATATATGCTCAAGTAGAATGGTCAATAGTCGCTGAAAAATC TGGTGTGGTCTCCAAAGCAATTGTCGCAAACTTAAAGAAAGCTGTGCAAA ATCGAATGACATTGAGTGAAAATCGACGAGTTAAGGAAGCCACAGAAACA GCAAAGAAGAGATTAGAATATCTCCAAGGACCTCGTTCTGTTGTTGCTAT GGTAGCACATGGCCGTAGAGGAACCATTGCGCCACAACTTGAGACAGGTA AATACTTGACCTTGAAAGGATTCAAAGAATGTCCGCCTGGTTTAAACATC GCGCAATCAAAATCCACCTGTAATACCGGCCTGTATATCACATCTTGGAA CCATTTCCGATTAACGGAACCACTCCGGTATGAACGAAACGAAAAGGGCG AAATGCGGtctgtccggtgttttgatttgGATTCCCGACGTCAATGCATC ACTCATTATGGACCCTGGGTAAGAAATGGTTGTTCACTGCAACCTTACG Run BLAST on NCBI transcript from alignment at sc0000078:247391..253574+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007570 ID=TCONS_00007570|Name=TCONS_00007570|organism=Clytia hemisphaerica|type=transcript|length=6184bp|location=Sequence derived from alignment at sc0000078:247391..253574+ (Clytia hemisphaerica) tttagaaaaaaatactttgactAGACATCAGTCATGAAGAAAAAGGGTCG
AATAATTCCCCTCtttcttttcattgaaatattgTCCATAGTCAGCGCTT
ATGAAGTGTTACCTGGGTTAGATGTTTTGAGTGCAGGATTCGATGCCGCT
TCTTGGAGCAGCAAGTCTCGTATATTTGATTTGGCAAATCAAGAACAGTC
ACAAAAAGTTTACGTTCAATCTATTGATAAGACGTACGTGGCGCCCGACT
TCGTGACGGTGGTGACGCACGGCGCACAATCAAAACGCGTGGAAGAATCC
TGTGTCGGAGTTTACACTCATTTTAGGTAGGTCAACTTTCTTTCTTGTgg
ttcaaaagaaaattgattacAATAAACGAATCTCATTCTTCAAACTTTGG
AGGACATTAAAGGCCGTCTCCACTTCTCCActcaatcgcactttttggct
tcaatcctttttgctttgaaaaaagattacgttatAAGAATGTTGCGCGC
GCTCGAATAAAAAGTTGAACacgtttcaacttttttcaaccgttacgtca
aatcgcgccaatggagttgcttcatttttcttttgacaaatagcgtggaa
gctttgctcgaaaaagtgcgattgaagcgcgcacaagtggagaccggcct
tacgGTCTCTTTGTTGAAATAAGCAAtcgtttgaaaatgattttttactt
tatttttatgCAGTGAGTACATTCATACGTATCAATCCTCAGTCGGTTTC
GACGTTGGTATACACACTGGCAACTTCAGTCTGGGAATCTCCGCTCATAA
AGACGTTCACAAAATCTACGAGTCGATCACTAAAGAAGGACAGGCTATCG
GATCATCTGAATCATGGTGGGGTGTTTTCGAAGCCACCCTTCCTCCACCC
TTCTTAATGGGCGAAAAAATGTCTCCCATGTTTCAACAAACTATGGCGTA
TTTGAACAAAATGGGCACACCTCAGACAGAAGCGCAGCAAACTATTTACA
ACCAAGTGTTAGGGAGCTTTGGAACACACTACGTCACATCGGTAATAACC
GGAGGGCGCGCCAAAATGACCAATTTTGTTAACAGCAGTTATCACAAGGA
ACATTCTGAAACAACTGTATCGACTCAAgtttccattggatttgaaTGGA
AGAAATTTGCTTTATCATTGTCAGATAAAgcgaaagattttgaaaagaaa
cTGACTGAGGATTTCAGGAACAACTCCAACCAAGTCTTAACTTTCCAACC
TGATGTCAAAGAAATACATCAATCAAAAGCACCTTGGTTAAAATGGGAAC
AGGTTGTGGCACAAGAACCTACTGTGGTCAACACATCAGCAAGTAGTCTG
GCAAACCTGttctttcaaaatgttgaaGTAATGAATCACANTGTGGTCAA
CACATCAGCAAGTAGTCTGGCAAACCTGttctttcaaaatgttgaaGTAA
TGAATCACATGCAACAGACCATCGATTATTACACACAGCACCAACACTTA
CCGAAACTGTCAGATATAAAGCCATTGAAATTGAACCCACTTCTTCCAAT
AGAATCAAACAAAATCGAGTTTAGACCAGATGAAGATACTCAGAAGAGCA
GTCCTGCTCCAGGATTGAAGATTGTTGGGTGTGGTTTTGATGCAACTACA
CTGCTTTCCAAAACCTGCTTGTTTGAATCACAATCCCCAGATCTACCTTC
GACCAAATGGCAGGATCCGTATTATCCTAATATAATATACGATGTCCCTT
TTGgttattttgcaaCAAATACACCAGAATCCCTCCTGGTTGATGCCACA
GTGGTGATGCAATCGATTGATGATTATGTTGAAAAATCGGTTTACTACGA
ATCACACCACCACAGTGGATTTTTAGGCTTTGGCTCGAAAACAGAGACTA
AAACAACTAAGAAATATTATCAAAACTTCTATGCACATAACTATAAACTC
GTTTTATCCCTCCGACAAATCGCATGGTACACTTTGAGACTATCTGAGTT
CCCCTTACCTAAGTTCAGTAGAACCTTTCAACAATCACTGGATTACTTAC
CAAAAACCTTCAATGCTTCAGATGCACATGGGATGACcatctttaaaatg
ttctttgatGCTTTTGGCACAGATGTTGTCACATCAGCTGACATGGGAGG
TAATTTATTCTaacattttctttctattttaaACGGTGAAATAAGAATAC
TGTTACAGACCCTCTTTTTATGCCCTTATCTTATNCATTGGTGAGCTTTC
CAGTTGATGTGATTTTTTCGATTGGAAGGATACGTTCGTTGTAGTAAAGA
ATTCCATTTTTCTCAGATGAAATGTTTGCCAATCTCTTTGATGGTGTAAA
TTTCTTCACTTCATGGGTTGCTTTCATAAAGAAATATTCCTGTGCCAACG
CGTTGTTATCCTTTGAAGATGGTTGTGGTAGACACGACTTGAGTTTGAGG
AATTTGATCACAAGAGCAAGAGTTGAGGTGGCTTTCTTCCAACCATATTT
GTTAGGATCAATGATGTATNCTTGAATCGGCGCACAGGGATGACATAATC
CGGTCCTTGAGAGGGCTTTAATACTTACAATCGAGGAGTTCTAAAGTTTA
CCTTTATCATTTCTTCGTGTaggcatggtatgggctgaaaACTGGTTTGA
ATCGTGTCTAAGCAAGATATACTCGGATATTTGCATCACACACACTGTAA
ATCGTGGCTGGTGGTTCGTCCACCATCATGATATCACGAAAAAGTGTGAT
AAACGTATCATCAATGATCTAAAGAAGTATTCAGAAGCTCATTACGAAAT
GCTGGGTGGAACTTCtggtcaaatcaaacaaaaagatTGGGATGAATGGG
TTTCCAGCGTTAAATATGATCCAAGACCGGTCAAATATAGCTTAGCTCCA
ATCCATTATTTGTTGGCCGATTCTCATCCGAAGAAGAAGTCTTTGGAGGC
AGCTACGCTACATTTCTTGAAAACAAGTCATGAGGAGCAACAGAAGTTGA
TTGTAGAGTTGAAAAAAGTTAGACCACCACCTGCTAGTATCTGTAAAAAG
ATTCATCCGCCCAAACTGAACGAGgttagtttgtttacattcatcAGGCC
GTTTCACGGTCGGAATGAACCATAGATAATCAGGACTGTAAAGTAAatag
taagtatattcatctggtggctgtcggctatccccttttctatttgcgct
agacctgggagatcgaatgctgaggtggagcgccacacctactctcagct
ctcagtaacttaccgcctagatcagattacccaatctaagctactcatct
gctgagttggcggtgaccggggatcgaacccacaacccttagattaTAAG
GCAAATGccctaccgactgagctacccggacacaaatcaggactgattgc
caACAACAAACTTCCGGTTGGTTAaacacaaaaatgacaaaagtcGTTAT
GAGAGCgcggtggtcctgattacccatgattacTTTCGACCGTGAAATTG
CCTATTATAGTCAGTGTCGGACGTTTGATGAAAAGCATCACATATCATTA
CGctataaatttttttctattgatACTTTTCTGGCGAAAAGATTAGTTAA
CATGATAAGAAACACGACATTAACTTTTTAAGATCACGCAATCTTTTAAG
CCAGTGAGCTAAAACATTAACGAGTTTATGTAACGGAGAcagtaaggttc
taatttgactagatcctgaccagctgaggacgaaggtaaatcagcacttt
taccgtccacGATTTTGTGGGTCAGAAGTGCGGGTTTTTTTCcgaatcgc
ttcagtcactctatcGTCCTCAAAagagcaaatacataaactcgctatta
tgaATTCACATCCAAATGGAAACACCGATGATATTATTCTTTTTGTTTGT
TCTGCTTTGTCATTAAAAGATGCGTGGTTGATTtaaatataatcaaaaat
gtttttagattCTTCAAGAAGACTACACCAAACCTTTATTAGATGCAGAC
CCCAGCGATGTATTGTGTCCGTTTGTTGGTTACCATGGTGCTTATTGTCC
AAAAGCATTGTCCAAAAGTAATTTGAAATTCATCTCTGATAAAGTCAAAG
GTCAAAGCTCACTTCCACGCGGCGTTGGTCTCACGATCGATGTTACGACC
GGTGAATTGAAACTTCCTGCACTGAACTACATTGATTCAAAGGATGAAAC
ATGGTCTGATCCACAGACTGGTGATATCTTTAAAATCCCAGTCGGGGTGT
CATTGACTATCAATGGAACTGAATCCGAAAATAAACCGATAATCCGAGTT
TTCAAATCGGAACAAGAATTGACTTCCGTTTGGGAATCTGGATACAAATC
AGGCACGTGGTTAGGTGGAGAATTCGGTCAAAGTAAAGGTGTCTTGGATT
TGTACACTAAATTCTTTTCCAAGCAACAAGCTACTTCGATCAATCAACAC
CCACAGAGTTTATACAAGTTATCCTTGGCAGGCGAATGGGAGAAAAATTT
GAACGATTACGTGAAATATGCGTTGAAAGCTTTGCCAGAGAAGTATGACG
AGAATATTTACGATCGATTCATGGATACGTGGGGTACACACGTGGCTGAG
AAAACATTGGTCGGAGGTTAGTTTTATATTATTAGTTGCCGAAAACCTAG
ATTAAAAGTTTTACTgtgagaaaaaataatataatttggATAGTCGTCTT
GTGGATgttcaaaagaaaataacagACACCTTTTCTCATAGGTTTCGGAC
ACTGAATCCTTTAATACCTACGAGGAGCACTCTACTAACTTACTTAATCT
AGCCAAGATAACAATTCTATTTCATTTTCTCTCAAAGGTATGTCTGAGCA
GCAAGTAATTATGAAGGACTGTATGTGGCAGAACAAGTATTTAACAGGAG
GAATAACCGATCCTCAGCTTCGACAATTCTTGGAAATGGAGTTGGGAATG
AAGACACCGCCCAGTGGATATTACAAAGAACGAAGACAAATGCATATCGA
TCATAGAATTGGAGGTAAACGCTTATTGTACAAGCATTTTTTTACTTGTA
AAGTTTTAACAAATCTTTAGACATCTTGATGATAGCACAGATGACAAATG
TGTTGAAGACAGTGGGGTCAGCACTAAAATCCTGGACATACTAAAAGGAA
TTTCGAGAATTTCTTGCATACCACCACCCCATTTTGgagaagtggtattt
tagtacctATGTACTAAAAGTTAGAGGGAAATTTTGACACATAGACCACc
caatttttgtattttcaggACAAATTTTGTCTTGTCGGAACCATTTTTCT
CAAGAGTGGTGAAATTGCAACAGAAtgttcatttttctcaaaaattgata
cttttaaaCAATGAAGCTTTATAAATTGAGCAAACATTAAAGACATTTGA
CTTGACCatacaaatttaaattttttgaaaaattgcaaaaattctgaata
aaaaatcataaaattatgaaaattactAATTTTAGTATCAGGAAAATTGG
CCGTATTAATACCGTCATTCTGATTTTACCACAGGGAATCCGGAAGTTAA
GGATAAAGCAACTTGGATTAAGACTTTGGGCAAAAATCCAGCACTGGTGA
AAATATANATTCTGATTTTACCACAGGGAATCCGGAAGTTAAGGATAAAG
CAACTTGGATTAAGACTTTGGGCAAAAATCCAGCACTGGTGAAAATATAT
GCTCAAGTAGAATGGTCAATAGTCGCTGAAAAATCTGGTGTGGTCTCCAA
AGCAATTGTCGCAAACTTAAAGAAAGCTGTGCAAAATCGAATGACATTGA
GTGAAAATCGACGAGTTAAGGAAGCCACAGAAACAGCAAAGAAGAGATTA
GAATATCTCCAAGGACCTCGTTCTGTTGTTGCTATGGTAGCACATGGCCG
TAGAGGAACCATTGCGCCACAACTTGAGACAGGTAAATACTTGACCTTGA
AAGGATTCAAAGAATGTCCGCCTGGTTTAAACATCGCGCAATCAAAATCC
ACCTGTAATACCGGCCTGTATATCACATCTTGGAACCATTTCCGATTAAC
GGAACCACTCCGGTATGAACGAAACGAAAAGGGCGAAATGCGGtctgtcc
ggtgttttgatttgGATTCCCGACGTCAATGCATCACTCATTATGGACCC
TGGGTAAGAAATGGTTGTTCACTGCAACCTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007570-exon-sc0000078-1491911889:247391..247716 | TCONS_00007570-exon-sc0000078-1491911889:247391..247716 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1510915933:247391..247716 | TCONS_00007570-exon-sc0000078-1510915933:247391..247716 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1575043694:247391..247716 | TCONS_00007570-exon-sc0000078-1575043694:247391..247716 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1491911889:248104..249539 | TCONS_00007570-exon-sc0000078-1491911889:248104..249539 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1510915933:248104..249539 | TCONS_00007570-exon-sc0000078-1510915933:248104..249539 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1575043694:248104..249539 | TCONS_00007570-exon-sc0000078-1575043694:248104..249539 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1491911889:250013..250464 | TCONS_00007570-exon-sc0000078-1491911889:250013..250464 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1510915933:250013..250464 | TCONS_00007570-exon-sc0000078-1510915933:250013..250464 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1575043694:250013..250464 | TCONS_00007570-exon-sc0000078-1575043694:250013..250464 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1491911889:251349..252006 | TCONS_00007570-exon-sc0000078-1491911889:251349..252006 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1510915933:251349..252006 | TCONS_00007570-exon-sc0000078-1510915933:251349..252006 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1575043694:251349..252006 | TCONS_00007570-exon-sc0000078-1575043694:251349..252006 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1491911889:252228..252404 | TCONS_00007570-exon-sc0000078-1491911889:252228..252404 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1510915933:252228..252404 | TCONS_00007570-exon-sc0000078-1510915933:252228..252404 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1575043694:252228..252404 | TCONS_00007570-exon-sc0000078-1575043694:252228..252404 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1491911889:252925..253574 | TCONS_00007570-exon-sc0000078-1491911889:252925..253574 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1510915933:252925..253574 | TCONS_00007570-exon-sc0000078-1510915933:252925..253574 | Clytia hemisphaerica | exon |
TCONS_00007570-exon-sc0000078-1575043694:252925..253574 | TCONS_00007570-exon-sc0000078-1575043694:252925..253574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000078 | supercontig | sc0000078:247391..253574 + |
Blast
The following BLAST results are available for this feature:
|