TCONS_00007472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007472
Unique NameTCONS_00007472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007472 ID=TCONS_00007472|Name=TCONS_00007472|organism=Clytia hemisphaerica|type=transcript|length=1962bp
GGAactaattgaaaaatatatattttgaccCCCGGAAAGTTTTGACCCAT
GGCAACTGAACACATGAAGATAAGGTCGCCTGTTTAACGTGAATTCAGAT
CGAAATAGGCAGTGAAACACTGACagcataaattttcaaattctaggTGT
TGTAACACGaactaatataatttcaaaatgagaGAAATCGTTCACTTGCA
AGCTGGACAATGCGGTAACCAAATTGGTGCCAAGTTTTGGGAAGTCATCT
CTGATGAACACGGTATCGACCCCACCGGAACCTACCATGGTGATTCAGAT
TTGCAATTAGAAAGAATCAATGTATATTACAATGAGGCCACTGGTGGTAA
ATATGTTCCAAGAGCTGTCCTTGTTGATTTGGAACCTGGAACTATGGATT
CAGTTAGATCAGGACCTTTTGGACAAATTTTTAGACCAGATAATTTCGTT
TTTGGACAATCAGGAGCCGGTAATAACTGGGCTAAAGGACATTATACTGA
AGGTGCAGAGTTAGTAGACTCTGTTTTAGATGTTGTACGTAAAGAAGCTG
AAAGCTGTGACTGTTTACAAGGATTCCAACTTACACACTCCCTTGGTGGA
GGCACTGGATCTGGTATGGGAACACTTCTCATTTCCAAAATCCGTGAGGA
ATACCCTGACAGAATCATGAACACATTCAGTGTTGTCCCATCCCCAAAAG
TCTCTGATACCGTTGTTGAACCATACAATGCTACCTTATCTGTCCATCAA
CTTGTCGAAAATACTGATGAAACCTTTTGTATCGACAACGAGGCCTTATA
CGATATCTGCTTCAGAACCTTGAAATTAACAACACCTACCTATGGAGATC
TCAACCATCTCGTTTCTGCCACCATGAGCGGTGTCACCACATGTCTCCGA
TTCCCTGGTCAATTGAATGCTGACCTCCGTAAATTAGCTGTCAACATGGT
CCCATTCCCCCGTCTCCATTTCTTCATGCCTGGATTTGCACCATTGACCA
GCCGTGGCTCGCAACAATACCGTGCCTTGACTGTCCCAGAATTGACCCAA
CAAATGTTCGATGCCAAGAACATGATGGCTGCCTGTGATCCACGTCATGG
ACGATACTTGACCGTTGCTGCCATGTTCCGTGGTAGAATGTCAATGAAGG
AAGTTGATGAACAAATGTTGAATGTTCAAAACAAGAACAGCTCATACTTC
GTTGAATGGATTCCAAACAACGTCAAGACCGCTGTCTGTGATATCCCACC
ACGTGGATTGAAGATGTCTGCTACCTTCATTGGTAACAGCACTGCCATCC
AAGAATTGTTCAAACGTATCAGCGAACAATTCACTGCTATGTTCCGAAGA
AAGGCTTTCTTGCATTGGTATACTGGTGAAGGTATGGACGAAATGGAATT
CACCGAAGCTGAATCCAACATGAATGATCTCGTCTCTGAATACCAACAAT
ACCAAGATGCCACTGCTGATGATGAAGGAGAATTcgaagaagaggaagaa
gaagatGCTGAATAAATTATgttctttttaactttttgggatGTCTTTAA
TTGTATTTGTGCTAATTTGAAGACTGACTTTAATTTCTGTAAATAATACT
TTTCTATTCCTGgtatttcatttcttttgaaaacattttcttcttataaa
tcaccttttcattaatttttgtgtttaaaaaataatcttttttgtGAATC
TGAATCTTTAGGGGAAATTTCGACCAACATTTCAGAAAACCGTTTTTCAG
CTTACTTTTTGGAGacactcaatttttttaaggGCTAGTTATTAGTCACc
acaacttgatttttttaacttttcgacttttttgatatatttaaaCTCAT
TTTTTCTGCCCCTCCAGCTAACAAACCTACATGAATCCCTGTCAGAATTC
GACGTCCTTTCCCGATGGTTGGTCTGAACGTTATAAGAAAGTTTAGCCCA
AAAAAAATAATC
Run BLAST on NCBI

transcript from alignment at sc0000077:666494..669968+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007472 ID=TCONS_00007472|Name=TCONS_00007472|organism=Clytia hemisphaerica|type=transcript|length=3475bp|location=Sequence derived from alignment at sc0000077:666494..669968+ (Clytia hemisphaerica)
GGAactaattgaaaaatatatattttgaccCCCGGAAAGTTTTGACCCAT
GGCAACTGAACACATGAAGATAAGGTCGCCTGTTTAACGTGAATTCAGAT
CGAAATAGGCAGTGAAACACTGACagcataaattttcaaattctaggTGT
TGTAACACGaactaatataatttcaaaatgagaGAAATCGTTCACTTGCA
AGCTGGACAATGCGGTAACCAAATTGGTGCCAAGGTATGTGCCTTTTGTT
TTTTTCCCCCGCTTTTCGTCCTATttttttgtgagtttttgaaTCAATAT
GCATTTTCTGAGATGCttagaaaactaaaaaaacgtCTCTTTACTTTTGT
AGTTTTGGGAAGTCATCTCTGATGAACACGGTATCGACCCCACCGGAACC
TACCATGGTGATTCAGATTTGCAATTAGAAAGAATCAATGTATATTACAA
TGAGGCCACTGGtaagttttgattttcttcatGCCACTCCCACCTAAGGA
TGCTTTATTGCAATAATACGTAATGTTATCTGAGgcttgaaatatcttta
tttaaGTTAACAAGGCAAATTGCATCCTCCTGTCCTGCTTGTGCTTCAGA
CTGATCATTTCTTTTGGAAACATTAGATGAGTCTTCATCAAATAAAGTAA
AGTTACAACGTAATAGGATAAAGTACTAAAGGATAtcaaatttgttcttt
tttcagGTGGTAAATATGTTCCAAGAGCTGTCCTTGTTGATTTGGAACCT
GGAACTATGGATTCAGTTAGATCAGGACCTTTTGGACAAATTTTTAGACC
AGATAATTTCGTTTTTGGACAATCAGGAGCCGGTAATAACTGGGCTAAAG
GACATTATACTGAAGGTGCAGAGTTAGTAGACTCTGTTTTAGATGTTGTA
CGTAAAGAAGCTGAAAGCTGTGACTGTTTACAAGGATTCCAACTTACACA
CTCCCTTGGTGGAGGCACTGGATCTGGTATGGGAACACTTCTCATTTCCA
AAATCCGTGAGGAATACCCTGACAGAATCATGAACACATTCAGTGTTGTC
CCATCCCCAAAAGTCTCTGATACCGTTGTTGAACCATACAATGCTACCTT
ATCTGTCCATCAACTTGTCGAAAATACTGATGAAACCTTTTGTATCGACA
ACGAGGCCTTATACGATATCTGCTTCAGAACCTTGAAATTAACAACACCT
ACCTATGGAGATCTCAACCATCTCGTTTCTGCCACCATGAGCGGTGTCAC
CACCTGTCTCAGATTCCCTGGTCAAGTAAGTATATTTCAAGTGTCTTTAC
ATTGGTGAAGTTATAAGGCTGAGTGAAATAGCTTTCTTACATACCATCAT
AGGAGTGATTTGTTgtgttaattttcatttttagtcaGGTCAAAAACTAA
AGTTAACTATAATTTTGAGAACTTTGATTGGTAAATATCAGTATTAAATA
TATCTCTTACTTGTANATACGTAATGTTATCTGAGgcttgaaatatcttt
atttaaGTTAACAAGGCAAATTGCATCCTCCTGTCCTGCTTGTGCTTCAG
ACTGATCATTTCTTTTGGAAACATTAGATGAGTCTTCATCAAATAAAGTA
AAGTTACAACGTAATAGGATAAAGTACTAAAGGATAtcaaatttgttctt
ttttcagGTGGTAAATATGTTCCAAGAGCTGTCCTTGTTGATTTGGAACC
TGGAACTATGGATTCAGTTAGATCAGGACCTTTTGGACAAATTTTTAGAC
CAGATAATTTCGTTTTTGGACAATCAGGAGCCGGTAATAACTGGGCTAAA
GGACATTATACTGAAGGTGCAGAGTTAGTAGACTCTGTTTTAGATGTTGT
ACGTAAAGAAGCTGAAAGCTGTGACTGTTTACAAGGATTCCAACTTACAC
ACTCCCTTGGTGGAGGCACTGGATCTGGTATGGGAACACTTCTCATTTCC
AAAATCCGTGAGGAATACCCTGACAGAATCATGAACACATTCAGTGTTGT
CCCATCCCCAAAAGTCTCTGATACCGTTGTTGAACCATACAATGCTACCT
TATCTGTCCATCAACTTGTCGAAAATACTGATGAAACCTTTTGTATCGAC
AACGAGGCCTTATACGATATCTGCTTCAGAACCTTGAAATTAACAACACC
TACCTATGGAGATCTCAACCATCTCGTTTCTGCCACCATGAGCGGTGTCA
CCACATGTCTCCGATTCCCTGGTCAAGTAAGTATATTTCAAGTGTCTTTA
CATTGGTGAAGTTATAAGGCTGAGTGAAATAGCTTTCTTACATACCACCA
TAGGAGTGATTTGTTgtgttaattttcatttttagtcaGGTCAAAAACTA
AAGCTAACTATAACTTTGAGAACTTTGATTGGTAAATACCAGTATTAAAT
AATATCTCTTACTTGTCTATTCTAGTTGAATGCTGACCTCCGTAAATTAG
CTGTCAACATGGTCCCATTCCCCCGTCTCCATTTCTTCATGCCTGGATTT
GCACCATTGACCAGCCGTGGCTCGCAACAATACCGTGCCTTGACTGTCCC
AGAATTGACCCAACAAATGTTCGATGCCAAGAACATGATGGCTGCCTGTG
ATCCACGTCATGGACGATACTTGACCGTTGCTGCCATGTTCCGTGGTAGA
ATGTCAATGAAGGAAGTTGATGAACAAATGTTGAATGTTCAAAACAAGAA
CAGCTCATACTTCGTTGAATGGATTCCAAACAACGTCAAGACCGCTGTCT
GTGATATCCCACCACGTGGATTGAAGATGTCTGCTACCTTCATTGGTAAC
AGCACTGCCATCCAAGAATTGTTCAAACGTATCAGCGAACAATTCACTGC
TATGTTCCGAAGAAAGGCTTTCTTGCATTGGTATACTGGTGAAGGTATGG
ACGAAATGGAATTCACCGAAGCTGAATCCAACATGAATGATCTCGTCTCT
GAATACCAACAATACCAAGATGCCACTGCTGATGATGAAGGAGAATTcga
agaagaggaagaagaagatGCTGAATAAATTATgttctttttaacttttt
gggatGTCTTTAATTGTATTTGTGCTAATTTGAAGACTGACTTTAATTTC
TGTAAATAATACTTTTCTATTCCTGgtatttcatttcttttgaaaacatt
ttcttcttataaatcaccttttcattaatttttgtgtttaaaaaataatc
ttttttgtGAATCTGAATCTTTAGGGGAAATTTCGACCAACATTTCAGAA
AACCGTTTTTCAGCTTACTTTTTGGAGacactcaatttttttaaggGCTA
GTTATTAGTCACcacaacttgatttttttaacttttcgacttttttgata
tatttaaaCTCATTTTTTCTGCCCCTCCAGCTAACAAACCTACATGAATC
CCTGTCAGAATTCGACGTCCTTTCCCGATGGTTGGTCTGAACGTTATAAG
AAAGTTTAGCCCAAAAAAAATAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004215XLOC_004215Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007472-exon-sc0000077-1491911889:666494..666727TCONS_00007472-exon-sc0000077-1491911889:666494..666727Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1510915933:666494..666727TCONS_00007472-exon-sc0000077-1510915933:666494..666727Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1575043694:666494..666727TCONS_00007472-exon-sc0000077-1575043694:666494..666727Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1491911889:666846..666954TCONS_00007472-exon-sc0000077-1491911889:666846..666954Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1510915933:666846..666954TCONS_00007472-exon-sc0000077-1510915933:666846..666954Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1575043694:666846..666954TCONS_00007472-exon-sc0000077-1575043694:666846..666954Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1491911889:667200..667746TCONS_00007472-exon-sc0000077-1491911889:667200..667746Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1510915933:667200..667746TCONS_00007472-exon-sc0000077-1510915933:667200..667746Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1575043694:667200..667746TCONS_00007472-exon-sc0000077-1575043694:667200..667746Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1491911889:668698..668719TCONS_00007472-exon-sc0000077-1491911889:668698..668719Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1510915933:668698..668719TCONS_00007472-exon-sc0000077-1510915933:668698..668719Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1575043694:668698..668719TCONS_00007472-exon-sc0000077-1575043694:668698..668719Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1491911889:668919..669968TCONS_00007472-exon-sc0000077-1491911889:668919..669968Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1510915933:668919..669968TCONS_00007472-exon-sc0000077-1510915933:668919..669968Clytia hemisphaericaexon
TCONS_00007472-exon-sc0000077-1575043694:668919..669968TCONS_00007472-exon-sc0000077-1575043694:668919..669968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:666494..669968 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.364405	0.470238	1.28939	1080.36	822.789	621.541	657.282	521.867	611.922	466.229	607.423	459.285	550.335	1.75166	0.950333	1.81839	0.596535	2.52025	1.26774	0	3.11691e-10	0	0.399396	1583.05	1346.81	0	0	2.82e-10	2.42525e-09
Blast
[Close]
BLAST of TCONS_00007472 vs. Swiss-Prot (Human)
Match: TBB4B (Tubulin beta-4B chain OS=Homo sapiens GN=TUBB4B PE=1 SV=1)

HSP 1 Score: 851.662 bits (2199), Expect = 0.000e+0
Identity = 424/426 (99.53%), Postives = 426/426 (100.00%), Query Frame = 1 
Query:  178 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 1455
            MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
The following BLAST results are available for this feature:
BLAST of TCONS_00007472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBB4B0.000e+099.53Tubulin beta-4B chain OS=Homo sapiens GN=TUBB4B PE... [more]
back to top