TCONS_00007519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007519
Unique NameTCONS_00007519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007519 ID=TCONS_00007519|Name=TCONS_00007519|organism=Clytia hemisphaerica|type=transcript|length=287bp
TAGCCTGGAATAGTATTGAAATATCAAAGATCCAGACCTAAAACCTATAA
CAATCTTCTCATAGTAGGATCTGAATATTGGCTTAGATTGCTAAGACTTA
GTTTTTATAGGGCTCTTTGTTTCATAGAGTTAAGTTCAATTTGGATGAGT
CCTGTGAGCTGATTAGAAGTGATTTTGACCcatgttgttgatttttttct
aaagtttccaTGGTATACTGACATATTATTGAAAATCAGATATTTACTGA
ACcccaaaatttccattttgcCATCTACAAATACTAA
Run BLAST on NCBI

transcript from alignment at sc0000077:433705..433991

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007519 ID=TCONS_00007519|Name=TCONS_00007519|organism=Clytia hemisphaerica|type=transcript|length=287bp|location=Sequence derived from alignment at sc0000077:433705..433991 (Clytia hemisphaerica)
TTAGTATTTGTAGATGgcaaaatggaaattttgggGTTCAGTAAATATCT
GATTTTCAATAATATGTCAGTATACCAtggaaactttagaaaaaaatcaa
caacatgGGTCAAAATCACTTCTAATCAGCTCACAGGACTCATCCAAATT
GAACTTAACTCTATGAAACAAAGAGCCCTATAAAAACTAAGTCTTAGCAA
TCTAAGCCAATATTCAGATCCTACTATGAGAAGATTGTTATAGGTTTTAG
GTCTGGATCTTTGATATTTCAATACTATTCCAGGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004249XLOC_004249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007519-exon-sc0000077-1491911889:433705..433991TCONS_00007519-exon-sc0000077-1491911889:433705..433991Clytia hemisphaericaexon
TCONS_00007519-exon-sc0000077-1510915933:433705..433991TCONS_00007519-exon-sc0000077-1510915933:433705..433991Clytia hemisphaericaexon
TCONS_00007519-exon-sc0000077-1575043694:433705..433991TCONS_00007519-exon-sc0000077-1575043694:433705..433991Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:433705..433991 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0955	1.39896	0	2.50549	0.657135	1.15027	1.45546	0.76337	0	0	0	0	0	1.12774	1.03237	0.344913	0.779998	0.605828	1.18779	1.65851	2.50312	2.39375	2.31905	1.98318	0	0	0.846634	0	0.801964	0.73622
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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