TCONS_00007517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007517
Unique NameTCONS_00007517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007517 ID=TCONS_00007517|Name=TCONS_00007517|organism=Clytia hemisphaerica|type=transcript|length=452bp
GCCCATACAAGTTTCTTTACGATCGCCATGGAAAATGCCGTGAGGGTTAA
ATTGTCCGCACTTATTCCACCAGAACCCGCTGTGTCTGAACTTAGAGCAG
TCAATGTTTGAATCGTCATCGTTGTCAAGGAGTTTGGTAGAAAAAGCCAT
GTTATTATGATTAGCAAGTCTGCTCATTGTTCCGTCAGTGGAACCTTCAA
GACGCAAACGGTAAAGATCTGTTTCAGATTCAATTCGAAAAATCTCCTGC
CATCCTTGATAGGTTTCACCGCTTGGCAATCTTTCTGTAACATACGAAAA
CTCGTAATCTCCTGATGTCGTAATTTTGTGTAGTATTTCGTTACCGATAT
AAAAGTCACCAGGATGTTCGCCGAATCCGTTTTTAAAAGTTTCCCAATCA
GCATTCCAGTCGTGTTGTCCGATCATTCGGTAAGTGAAAACCATCCAACC
AT
Run BLAST on NCBI

protein sequence of TCONS_00007517-protein

>TCONS_00007517-protein ID=TCONS_00007517-protein|Name=TCONS_00007517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
GWMVFTYRMIGQHDWNADWETFKNGFGEHPGDFYIGNEILHKITTSGDYE
FSYVTERLPSGETYQGWQEIFRIESETDLYRLRLEGSTDGTMSRLANHNN
MAFSTKLLDNDDDSNIDCSKFRHSGFWWNKCGQFNPHGIFHGDRKETCMG
Run BLAST on NCBI

transcript from alignment at sc0000077:368045..368496

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007517 ID=TCONS_00007517|Name=TCONS_00007517|organism=Clytia hemisphaerica|type=transcript|length=452bp|location=Sequence derived from alignment at sc0000077:368045..368496 (Clytia hemisphaerica)
ATGGTTGGATGGTTTTCACTTACCGAATGATCGGACAACACGACTGGAAT
GCTGATTGGGAAACTTTTAAAAACGGATTCGGCGAACATCCTGGTGACTT
TTATATCGGTAACGAAATACTACACAAAATTACGACATCAGGAGATTACG
AGTTTTCGTATGTTACAGAAAGATTGCCAAGCGGTGAAACCTATCAAGGA
TGGCAGGAGATTTTTCGAATTGAATCTGAAACAGATCTTTACCGTTTGCG
TCTTGAAGGTTCCACTGACGGAACAATGAGCAGACTTGCTAATCATAATA
ACATGGCTTTTTCTACCAAACTCCTTGACAACGATGACGATTCAAACATT
GACTGCTCTAAGTTCAGACACAGCGGGTTCTGGTGGAATAAGTGCGGACA
ATTTAACCCTCACGGCATTTTCCATGGCGATCGTAAAGAAACTTGTATGG
GC

Coding sequence (CDS) from alignment at sc0000077:368045..368496

>TCONS_00007517 ID=TCONS_00007517|Name=TCONS_00007517|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at sc0000077:368045..368496 (Clytia hemisphaerica)
GGTTGGATGGTTTTCACTTACCGAATGATCGGACAACACGACTGGAATGC
TGATTGGGAAACTTTTAAAAACGGATTCGGCGAACATCCTGGTGACTTTT
ATATCGGTAACGAAATACTACACAAAATTACGACATCAGGAGATTACGAG
TTTTCGTATGTTACAGAAAGATTGCCAAGCGGTGAAACCTATCAAGGATG
GCAGGAGATTTTTCGAATTGAATCTGAAACAGATCTTTACCGTTTGCGTC
TTGAAGGTTCCACTGACGGAACAATGAGCAGACTTGCTAATCATAATAAC
ATGGCTTTTTCTACCAAACTCCTTGACAACGATGACGATTCAAACATTGA
CTGCTCTAAGTTCAGACACAGCGGGTTCTGGTGGAATAAGTGCGGACAAT
TTAACCCTCACGGCATTTTCCATGGCGATCGTAAAGAAACTTGTATGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004247XLOC_004247Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007517-exon-sc0000077-1491911889:368045..368496TCONS_00007517-exon-sc0000077-1491911889:368045..368496Clytia hemisphaericaexon
TCONS_00007517-exon-sc0000077-1510915933:368045..368496TCONS_00007517-exon-sc0000077-1510915933:368045..368496Clytia hemisphaericaexon
TCONS_00007517-exon-sc0000077-1575043694:368045..368496TCONS_00007517-exon-sc0000077-1575043694:368045..368496Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007517-proteinTCONS_00007517-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:368045..368496 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.145999	0	0.330615	0	1.5751	1.24467	1.12623	1.40581	0.738183	0.457179	0.168341	0.0972345	3.68977	2.01677	0	0.0889676	0	0.224675	6.8288	7.70169	0.84696	0.413118	0.669598	1.06533	1.72428	1.39898	0	0.213652	0.162047	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00007517 vs. Swiss-Prot (Human)
Match: TENX (Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 2.406e-20
Identity = 48/141 (34.04%), Postives = 73/141 (51.77%), Query Frame = -3 
Query:   31 GWMVFTYRMIGQHDWNADWETFKNGFGEHPGDFYIGNEILHKITTSGDYEFSYVTERLPSGETYQGWQEIFRIESETDLYRLRLEGSTDGTMSRLANHNNMAFSTKLLDNDDDS-NIDCSKFRHSGFWWNKCGQFNPHGIF 450
            GW+VF  RM GQ D+  DWE + +GFG   G+F++GNE LH +T +GDY  S   +     E      + F ++S  + YRL LEG        ++ H+   FS +  D D +S  I C+      +W+  C   N +G++
Sbjct: 4066 GWLVFQRRMDGQTDFWRDWEDYAHGFGNISGEFWLGNEALHSLTQAGDY--SMRVDLRAGDEAVFAQYDSFHVDSAAEYYRLHLEGYHGTAGDSMSYHSGSVFSAR--DRDPNSLLISCAVSYRGAWWYRNCHYANLNGLY 4202
The following BLAST results are available for this feature:
BLAST of TCONS_00007517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENX2.406e-2034.04Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=4[more]
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