TCONS_00007356 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007356
Unique NameTCONS_00007356
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007356 ID=TCONS_00007356|Name=TCONS_00007356|organism=Clytia hemisphaerica|type=transcript|length=427bp
ATCCCAAATTCCGTTTTGTACAATTTTTAATTTGCACTTTCATTCACCTT
TCGAAATATAATTTTCTCTTTCGGCACTCCTTATGTCTCCTGTTTCTTTC
AACCCTTTTGATTTGACCCCTTTGCCTCGTTAGCTTCTCATTTCGATCTA
TTACTTATTCTTGGAGACGCGGGAATTAACTTGAAAAATCGCTAATGTAT
TAGCAAAAAAACCTTGAAGACCTTGAAAATGGTGTAAAAAAATTCTGTAG
ACACTCTGTCTGTGGCCCggccatatggcctaccctATGGCCTACATTAC
GGCccaccttaaccctattcatactaggcttttctttggggcggttcaaa
actaggggggcTGTTTCTGCACCACccctaattttttatttagagggtct
ttttgaatgaaatttggcacacaagcc
Run BLAST on NCBI

transcript from alignment at sc0000075:621828..622254

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007356 ID=TCONS_00007356|Name=TCONS_00007356|organism=Clytia hemisphaerica|type=transcript|length=427bp|location=Sequence derived from alignment at sc0000075:621828..622254 (Clytia hemisphaerica)
ggcttgtgtgccaaatttcattcaaaaagaccctctaaataaaaaattag
ggGTGGTGCAGAAACAgcccccctagttttgaaccgccccaaagaaaagc
ctagtatgaatagggttaaggtggGCCGTAATGTAGGCCATagggtaggc
catatggccGGGCCACAGACAGAGTGTCTACAGAATTTTTTTACACCATT
TTCAAGGTCTTCAAGGTTTTTTTGCTAATACATTAGCGATTTTTCAAGTT
AATTCCCGCGTCTCCAAGAATAAGTAATAGATCGAAATGAGAAGCTAACG
AGGCAAAGGGGTCAAATCAAAAGGGTTGAAAGAAACAGGAGACATAAGGA
GTGCCGAAAGAGAAAATTATATTTCGAAAGGTGAATGAAAGTGCAAATTA
AAAATTGTACAAAACGGAATTTGGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004135XLOC_004135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007356-exon-sc0000075-1491911889:621828..622254TCONS_00007356-exon-sc0000075-1491911889:621828..622254Clytia hemisphaericaexon
TCONS_00007356-exon-sc0000075-1510915933:621828..622254TCONS_00007356-exon-sc0000075-1510915933:621828..622254Clytia hemisphaericaexon
TCONS_00007356-exon-sc0000075-1575043694:621828..622254TCONS_00007356-exon-sc0000075-1575043694:621828..622254Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:621828..622254 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.64124	1.58125	0.922546	1.12545	1.09733	0.346851	0.231227	0.990292	0.839514	2.58031	0.626735	1.14591	1.05581	1.36596	0.658184	1.86581	0.920069	2.34275	1.2648	1.66865	2.71762	0.762054	1.00461	1.44543	0.174729	0	2.78411	3.31735	2.77297	2.64474
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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